BAC Information

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BAC

Clone NameB6Ng01-124F03
Chromosome2 (Build37)4 (Build37)
Map Location 124,993,771 - 124,994,48610,664,898 - 10,665,451
singlet/doubletsingletsinglet
Overlap geneSlc12a1
Upstream geneLOC100043360, Sema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375
Downstream geneDut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124F03.bB6Ng01-124F03.g
ACCDH927258DH927259
length716850
definitionDH927258|Mus musculus domesticus DNA, BAC clone: B6Ng01-124F03, 5' end.DH927259|Mus musculus domesticus DNA, BAC clone: B6Ng01-124F03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,993,771 - 124,994,486)(10,664,898 - 10,665,451)
sequence
gaattcttacaataagaacaagaaatggaaaggaaacccaggggaacagg
gcctggaaccagtgttcttccttgaacactaagcaatagctttgtctatg
gctacccactcctgtgacatgaaaattgaacaggagcacctcacaggttg
agcaagaaaccagcaaacaggctggatgaggaacacaaacaccacagtga
cttcttaggcggagccagtcacggggtctgcagagtcaacctgtgacaag
caaactcagagcaaaaccaccttctacagagaaggaactgtgttcactgt
ggataacgtcctcagaatggaacatgtcatctggtagagcaaatccccat
gggtttttaaaagtcaacttggctcagcaaactggctggacagttacaag
agacaaacaggggctgaagaattggcttaacgcttaggagcacttgctgc
tcttgcagaggacccaggttcacttctcagcacccatgtggtggctcaca
gccatatgctatgccagttccagtgtatctgatgctctcttctgaccacc
tcgggcaccaggcacacacacacatgggttcaggcattatgctcatccac
ataaaataggatacatctttcgaaagtcaattaataaaatataagttgag
ataaaaggtgtcttgtgggtagggcgatgtttggaaggccctgaagtggt
ggtggtggtggggatg
gaattcctgatctttccagaacttttgtcatgaatgggtgttggatcttg
tcaaatgctttttcagcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtacattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatatattcataagagaaattggtctgaagttctctatctttgttgg
atctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagt
tgggtagagtaccttctacttctatcttgtgaaatagtttgtgcagaact
ggaattagatcttctttgaaggtctgatagaactctgcactaaacccatt
tggtgctgggctttttttggctgggagactattaataactgcttctattt
ctttaggggatatgggactgtttagaaggtcaacttgatcctgattcaac
tttggtacctggtatctgtccagaaatttgtccatttcgtccaggttttt
ccagttttgttgagtatagccttttgtagaaggatctgatggtgttttgg
atcttcaggatctgttgttatgtctcccttttcagttctgattttgttat
taggattttgtccctgtgccctctagtgagtctagctaagggttatctat
cttgttgatttctcaagaaccaactcctcgtttggtaattctttgatagt
cttcttgtttccacttggttgattcaccctgagtttgatatttcctgccg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_124993771_124994486
seq2: B6Ng01-124F03.b_48_763 (reverse)

seq1  CATCCCCACCACCACCACCACTTCAGGGCCTTCCAAACATCGCCCTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCACCACCACCACCACTTCAGGGCCTTCCAAACATCGCCCTACCC  50

seq1  ACAAGACACCTTTTATCTCAACTTATATTTTATTAATTGACTTTCGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACACCTTTTATCTCAACTTATATTTTATTAATTGACTTTCGAAAG  100

seq1  ATGTATCCTATTTTATGTGGATGAGCATAATGCCTGAACCCATGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCCTATTTTATGTGGATGAGCATAATGCCTGAACCCATGTGTGTG  150

seq1  TGTGCCTGGTGCCCGAGGTGGTCAGAAGAGAGCATCAGATACACTGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGGTGCCCGAGGTGGTCAGAAGAGAGCATCAGATACACTGGAAC  200

seq1  TGGCATAGCATATGGCTGTGAGCCACCACATGGGTGCTGAGAAGTGAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAGCATATGGCTGTGAGCCACCACATGGGTGCTGAGAAGTGAACC  250

seq1  TGGGTCCTCTGCAAGAGCAGCAAGTGCTCCTAAGCGTTAAGCCAATTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTCTGCAAGAGCAGCAAGTGCTCCTAAGCGTTAAGCCAATTCTT  300

seq1  CAGCCCCTGTTTGTCTCTTGTAACTGTCCAGCCAGTTTGCTGAGCCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTGTTTGTCTCTTGTAACTGTCCAGCCAGTTTGCTGAGCCAAGT  350

seq1  TGACTTTTAAAAACCCATGGGGATTTGCTCTACCAGATGACATGTTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTAAAAACCCATGGGGATTTGCTCTACCAGATGACATGTTCCAT  400

seq1  TCTGAGGACGTTATCCACAGTGAACACAGTTCCTTCTCTGTAGAAGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACGTTATCCACAGTGAACACAGTTCCTTCTCTGTAGAAGGTGG  450

seq1  TTTTGCTCTGAGTTTGCTTGTCACAGGTTGACTCTGCAGACCCCGTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCTGAGTTTGCTTGTCACAGGTTGACTCTGCAGACCCCGTGACT  500

seq1  GGCTCCGCCTAAGAAGTCACTGTGGTGTTTGTGTTCCTCATCCAGCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCGCCTAAGAAGTCACTGTGGTGTTTGTGTTCCTCATCCAGCCTGT  550

seq1  TTGCTGGTTTCTTGCTCAACCTGTGAGGTGCTCCTGTTCAATTTTCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTTTCTTGCTCAACCTGTGAGGTGCTCCTGTTCAATTTTCATGT  600

seq1  CACAGGAGTGGGTAGCCATAGACAAAGCTATTGCTTAGTGTTCAAGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGTGGGTAGCCATAGACAAAGCTATTGCTTAGTGTTCAAGGAAG  650

seq1  AACACTGGTTCCAGGCCCTGTTCCCCTGGGTTTCCTTTCCATTTCTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGTTCCAGGCCCTGTTCCCCTGGGTTTCCTTTCCATTTCTTGTT  700

seq1  CTTATTGTAAGAATTC  716
      ||||||||||||||||
seq2  CTTATTGTAAGAATTC  716

seq1: chr4_10664898_10665451
seq2: B6Ng01-124F03.g_377_919 (reverse)

seq1  CGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAG  50
      ||||||||||| |||||||||| ||||| |||||||||||||||||||||
seq2  CGGCAGGAAAT-ATCAAACTCA-GGGTG-AATCAACCAAGTGGAAACAAG  47

seq1  AAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAA  100
      ||| |||| |||||||||| |||||||||||||||||||| ||||| |||
seq2  AAG-ACTA-TCAAAGAATT-ACCAAACGAGGAGTTGGTTC-TTGAG-AAA  92

seq1  TCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCAAAGGGAC  150
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  TCAACAAGATAGAT-AACCCTTAGCTAGACTCACTAGAGGGCACAGGGAC  141

seq1  AAAATCCTAATCAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGA  200
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  AAAATCCTAAT-AACAAAATCAGAACTGAAAAGGGAGACATAACAACAGA  190

seq1  TCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGCTTATACT  250
      ||||||||  ||||||||||||||||||||||||||||||||  ||||||
seq2  TCCTGAAG--ATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT  238

seq1  CAACAAAACTGG-AAAACCTGGATGAAATGGACAAATTTCTGGACAGATA  299
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  CAACAAAACTGGAAAAACCTGGACGAAATGGACAAATTTCTGGACAGATA  288

seq1  CCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCA  338

seq1  TATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAA  388

seq1  AGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGA  449
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCACCAAATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGA  438

seq1  AGATCTAATTCCAGTTCTGCACAAACTATTTCACAAGATAGAAGTAGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAATTCCAGTTCTGCACAAACTATTTCACAAGATAGAAGTAGAAG  488

seq1  GTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAA  538

seq1  CCACA  554
      |||||
seq2  CCACA  543