BAC Information

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BAC

Clone NameB6Ng01-124H18
Chromosome2 (Build37)
Map Location 25,042,840 - 25,189,534
singlet/doubletdoublet
Overlap geneA830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1
Upstream geneIl1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp
Downstream geneDpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124H18.bB6Ng01-124H18.g
ACCDH927380DH927381
length1,107974
definitionDH927380|Mus musculus domesticus DNA, BAC clone: B6Ng01-124H18, 5' end.DH927381|Mus musculus domesticus DNA, BAC clone: B6Ng01-124H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,188,422 - 25,189,534)(25,042,840 - 25,043,816)
sequence
gaattctttttcaagcatttggcagagtgtgtccttaaacacaacataca
acaaccccctcagccccgcaacatatcaatttaatagtgcccaaacaggc
agcttgacttgagcaatctgaagcaatgtttgggtttccaaccttaaagc
agcccagaaggaatcctaggatcctctcaggatatccactggtcccaggc
aaacacactgtaccacgtggtagggacatgtgattagtgctgatctgctg
ctatagactgatggggaggggagggacagcactgttggcccaaagaccta
cagggtcacctgtacaccagttggtcatactgggctccacattttcccct
ctgctgtatttattgccaatctgtcaccacatgccttgtggtactgtttt
atctggattgcaatactgtatctgacctcagcctgcatctcctctgctcg
agcaccactggtatttcatacctttccactggtcagccgtatgaagagag
tacaggaatccacagagaatcagaaagcccaagacgaagagaatcacatt
ccgctgtagcctcgaaagctgcttccatttctaagaaagagccgggaaaa
tgacacttgtcacagattcggttaaaagagcaattcagagagacccttat
gtaaggcttgtccttacttgagggcaggtaagttccctctcagcaaagtt
tacattgacagaacagtgctagaggtgacagagcacaccatcccatacat
ggcacaagatctgtacaccatgtgtccagctgcacgtgcactggagaaaa
actcctgaaatccccatgacttggctcaggcatcgtcggaccatacgggc
tgtgctcattgccccctcagctcaggatccccagggcacctgacattagg
caggggaagcaactacaccgaaacccaagctgcgagaaccagacgcagca
cagaaacttctggacgctggaagagacacggacgctcagctaggtacttc
cctcggtaaggcttcccagcccggaccccgcctcaccctccagcatgagc
gtcgccgcggctcttgctgttgtgaagctttcgcccaggcttaacgtcac
ggatgaa
gaattccctccctccctccttcctttcttcctgtcgccctcctccctgtt
ctgtagccccagcggacctggagcttgagtctaggcctcaaatgtagagc
tccttcagcttctacctcccagtctcctgctgggattaaaggggtgcacc
accactgcctggcaattaagtggtttcttttgggctggtgagatggctca
tcaggtaagagcactgactgctcttccgaaggttcaaatcccagcaacta
catggtggctcacaaccatccttaatgagatctgatgccctcttctggag
tgtctgaagacagctacaatgtacttattgggctggagcaagcagggatg
gaaggagagggtggggctgaccagagtgagcagaggtcctaaattcaatt
cccagcaaccacatgaaggttcacaactatctgtacagctacagtgtact
catatacataaaacatctttaaaaaaaatggtttcttttcatttgctttg
gcatagcaatataaaagtagttaagatatacatctatcaaaacctacctt
tgaaggctgctgagatggcccagatggcacttggctacccaagcctgccg
accagagtaaaaggagaggagaccagcagctccacaggtgtcctgtgacc
tccacacactggctgtggcacacactcacgcatgcgcatcatgtacacag
ctaggcttggtagctgtcgcatgcctacagtctcagcactcagaacctgt
gagtcggaggccagccagagctacatagtgagacccagtctggagaaaat
aaaattaaaattaaaataactttttgaaccagtgtggtgaaacgccttta
gtcccagaacttgggaagcagaggcaagaagttctgtttcaaggccagcc
tgatctagattgagtccatgaccagccaaagcttatatgaagacctgccc
taaacctgccacacccccaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_25188422_25189534
seq2: B6Ng01-124H18.b_49_1155 (reverse)

seq1  TTCATCTCGGTGACGCTGAGCCTGGGCGAGAGCTACGACAACAGCAAGAG  50
      ||||  || |||||| | ||||||||||| |||| | |||||||||||||
seq2  TTCA--TCCGTGACGTTAAGCCTGGGCGAAAGCTTC-ACAACAGCAAGAG  47

seq1  CCGGCGGCGGCGCTCATGCTGGAGGGTGAGGCGGGGTCCGGGCTGGGGAA  100
      || |||||| |||||||||||||||||||||||||||||||||| |||||
seq2  CC-GCGGCGACGCTCATGCTGGAGGGTGAGGCGGGGTCCGGGCT-GGGAA  95

seq1  GCCTTACCGAGGGAAGTACCTAGCTGGAGCGTTCGTGTCTCTTCCAGCGT  150
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  GCCTTACCGAGGGAAGTACCTAGCT-GAGCGTCCGTGTCTCTTCCAGCGT  144

seq1  CCAGAAGTTTCTGTGCTGCGTCTGGTTCTCGCAGCTTGGGTTTCGGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCAGAAGTTTCTGTGCTGCGTCTGGTTCTCGCAGCTTGGGTTTCGGTGTA  194

seq1  GTTGCTTCCCCTGCCTAATGTCAGGTGCCCTGGGGATCCTGAGCTGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCCCCTGCCTAATGTCAGGTGCCCTGGGGATCCTGAGCTGAGGG  244

seq1  GGCAATGAGCACAGCCCGTATGGTCCGACGATGCCTGAGCCAAGTCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGAGCACAGCCCGTATGGTCCGACGATGCCTGAGCCAAGTCATGG  294

seq1  GGATTTCAGGAGTTTTTCTCCAGTGCACGTGCAGCTGGACACATGGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCAGGAGTTTTTCTCCAGTGCACGTGCAGCTGGACACATGGTGTA  344

seq1  CAGATCTTGTGCCATGTATGGGATGGTGTGCTCTGTCACCTCTAGCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTGTGCCATGTATGGGATGGTGTGCTCTGTCACCTCTAGCACTG  394

seq1  TTCTGTCAATGTAAACTTTGCTGAGAGGGAACTTACCTGCCCTCAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCAATGTAAACTTTGCTGAGAGGGAACTTACCTGCCCTCAAGTAA  444

seq1  GGACAAGCCTTACATAAGGGTCTCTCTGAATTGCTCTTTTAACCGAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGCCTTACATAAGGGTCTCTCTGAATTGCTCTTTTAACCGAATCT  494

seq1  GTGACAAGTGTCATTTTCCCGGCTCTTTCTTAGAAATGGAAGCAGCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAGTGTCATTTTCCCGGCTCTTTCTTAGAAATGGAAGCAGCTTTC  544

seq1  GAGGCTACAGCGGAATGTGATTCTCTTCGTCTTGGGCTTTCTGATTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTACAGCGGAATGTGATTCTCTTCGTCTTGGGCTTTCTGATTCTCT  594

seq1  GTGGATTCCTGTACTCTCTTCATACGGCTGACCAGTGGAAAGGTATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTCCTGTACTCTCTTCATACGGCTGACCAGTGGAAAGGTATGAAA  644

seq1  TACCAGTGGTGCTCGAGCAGAGGAGATGCAGGCTGAGGTCAGATACAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTGGTGCTCGAGCAGAGGAGATGCAGGCTGAGGTCAGATACAGTA  694

seq1  TTGCAATCCAGATAAAACAGTACCACAAGGCATGTGGTGACAGATTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATCCAGATAAAACAGTACCACAAGGCATGTGGTGACAGATTGGCA  744

seq1  ATAAATACAGCAGAGGGGAAAATGTGGAGCCCAGTATGACCAACTGGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACAGCAGAGGGGAAAATGTGGAGCCCAGTATGACCAACTGGTGT  794

seq1  ACAGGTGACCCTGTAGGTCTTTGGGCCAACAGTGCTGTCCCTCCCCTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGACCCTGTAGGTCTTTGGGCCAACAGTGCTGTCCCTCCCCTCCC  844

seq1  CATCAGTCTATAGCAGCAGATCAGCACTAATCACATGTCCCTACCACGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCTATAGCAGCAGATCAGCACTAATCACATGTCCCTACCACGTG  894

seq1  GTACAGTGTGTTTGCCTGGGACCAGTGGATATCCTGAGAGGATCCTAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTGTGTTTGCCTGGGACCAGTGGATATCCTGAGAGGATCCTAGGA  944

seq1  TTCCTTCTGGGCTGCTTTAAGGTTGGAAACCCAAACATTGCTTCAGATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGGGCTGCTTTAAGGTTGGAAACCCAAACATTGCTTCAGATTG  994

seq1  CTCAAGTCAAGCTGCCTGTTTGGGCACTATTAAATTGATATGTTGCGGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCAAGCTGCCTGTTTGGGCACTATTAAATTGATATGTTGCGGGG  1044

seq1  CTGAGGGGGTTGTTGTATGTTGTGTTTAAGGACACACTCTGCCAAATGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGGGTTGTTGTATGTTGTGTTTAAGGACACACTCTGCCAAATGCT  1094

seq1  TGAAAAAGAATTC  1113
      |||||||||||||
seq2  TGAAAAAGAATTC  1107

seq1: chr2_25042840_25043816
seq2: B6Ng01-124H18.g_68_1041

seq1  GAATTCCCTCCCTCCCTCCTTCCTTTCTTCCTGTCGCCCTCCTCCCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCCTCCCTCCTTCCTTTCTTCCTGTCGCCCTCCTCCCTGTT  50

seq1  CTGTAGCCCCAGCGGACCTGGAGCTTGAGTCTAGGCCTCAAATGTAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCCCAGCGGACCTGGAGCTTGAGTCTAGGCCTCAAATGTAGAGC  100

seq1  TCCTTCAGCTTCTACCTCCCAGTCTCCTGCTGGGATTAAAGGGGTGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGCTTCTACCTCCCAGTCTCCTGCTGGGATTAAAGGGGTGCACC  150

seq1  ACCACTGCCTGGCAATTAAGTGGTTTCTTTTGGGCTGGTGAGATGGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCCTGGCAATTAAGTGGTTTCTTTTGGGCTGGTGAGATGGCTCA  200

seq1  TCAGGTAAGAGCACTGACTGCTCTTCCGAAGGTTCAAATCCCAGCAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAAGAGCACTGACTGCTCTTCCGAAGGTTCAAATCCCAGCAACTA  250

seq1  CATGGTGGCTCACAACCATCCTTAATGAGATCTGATGCCCTCTTCTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCTCACAACCATCCTTAATGAGATCTGATGCCCTCTTCTGGAG  300

seq1  TGTCTGAAGACAGCTACAATGTACTTATTGGGCTGGAGCAAGCAGGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGACAGCTACAATGTACTTATTGGGCTGGAGCAAGCAGGGATG  350

seq1  GAAGGAGAGGGTGGGGCTGACCAGAGTGAGCAGAGGTCCTAAATTCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAGGGTGGGGCTGACCAGAGTGAGCAGAGGTCCTAAATTCAATT  400

seq1  CCCAGCAACCACATGAAGGTTCACAACTATCTGTACAGCTACAGTGTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCACATGAAGGTTCACAACTATCTGTACAGCTACAGTGTACT  450

seq1  CATATACATAAAACATCTTTAAAAAAAATGGTTTCTTTTCATTTGCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATAAAACATCTTTAAAAAAAATGGTTTCTTTTCATTTGCTTTG  500

seq1  GCATAGCAATATAAAAGTAGTTAAGATATACATCTATCAAAACCTACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCAATATAAAAGTAGTTAAGATATACATCTATCAAAACCTACCTT  550

seq1  TGAAGGCTGCTGAGATGGCCCAGATGGCACTTGGCTACCCAAGCCTGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTGCTGAGATGGCCCAGATGGCACTTGGCTACCCAAGCCTGCCG  600

seq1  ACCAGAGTAAAAGGAGAGGAGACCAGCAGCTCCACAGGTGTCCTGTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGTAAAAGGAGAGGAGACCAGCAGCTCCACAGGTGTCCTGTGACC  650

seq1  TCCACACACTGGCTGTGGCACACACTCACGCATGCGCATCATGTACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACACTGGCTGTGGCACACACTCACGCATGCGCATCATGTACACAG  700

seq1  CTAGGCTTGGTAGCTGTCGCATGCCTACAGTCTCAGCACTCAGAACCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTTGGTAGCTGTCGCATGCCTACAGTCTCAGCACTCAGAACCTGT  750

seq1  GAGTCGGAGGCCAGCCAGAGCTACATAGTGAGACCCAGTCTGGAGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGGAGGCCAGCCAGAGCTACATAGTGAGACCCAGTCTGGAGAAAAT  800

seq1  -AAATTAAAATTAAAAATAACTTTTTGAACCAGGTGTGGTGAAACGCCTT  849
       ||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  AAAATTAAAATT-AAAATAACTTTTTGAACCA-GTGTGGTGAAACGCCTT  848

seq1  TAGTCCCAGAACTTGGGAGGCAGAGGCAAGAAGTTCTGATTCAAGGCCAG  899
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  TAGTCCCAGAACTTGGGAAGCAGAGGCAAGAAGTTCTGTTTCAAGGCCAG  898

seq1  CCTGATCTAGAGTGAGTTCCAGGA-CAGCCAAGGCTATACAGAGAGACCC  948
      ||||||||||| |||| |||| || ||||||| ||| || |   ||| ||
seq2  CCTGATCTAGATTGAG-TCCATGACCAGCCAAAGCT-TATATGAAGA-CC  945

seq1  TGCCTCAAACCTG-CACACCCCCCAAAAAA  977
      ||||  ||||||| ||||||||| ||||| 
seq2  TGCCCTAAACCTGCCACACCCCCAAAAAA-  974