BAC Information

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BAC

Clone NameB6Ng01-124J19
Chromosome2 (Build37)
Map Location 143,435,347 - 143,628,404
singlet/doubletdoublet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124J19.bB6Ng01-124J19.g
ACCDH927474DH927475
length1,019900
definitionDH927474|Mus musculus domesticus DNA, BAC clone: B6Ng01-124J19, 5' end.DH927475|Mus musculus domesticus DNA, BAC clone: B6Ng01-124J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,435,347 - 143,436,359)(143,627,505 - 143,628,404)
sequence
gaattctccttcctccagatttggaagttggaccgcaacgtgatctgtga
cttagcacatcacagacacagtcaatgtgaatggatctggggagcacttg
aagaagcatcttattactaaaccttgtggaaagtgctaagaatattccac
atgaccataattttcaatctttactcataagctgcttcttatgtgaatat
taattgataaaatgcaatgttcaaaacctgaagaaaatacacaaatgcag
gtcaacgatggcaaagatatctcacaaaataattctggatagaaaatgac
gctgccattgtgtgctgttcctgcattccccaaagtgaacaaattctagg
gaatgatatggagacttatcttggaacctcattgctggaaaataacccaa
gaggccacagaacctgacacgcgtggctatttgaaagtcatctggagtga
aaacgagccagaatcagcatagagtgtacaacaaacaaaacccagatgtc
tcttgaagaaaaggttaactgaaggctaatgctaaaagagttttaaaggc
aggagaaagaagactggagataaatagggaaattatatgcagcctccata
ggagttggaagagaaagctctctgcacagaatttttaaaagaaaattaac
cttttctttaacacctaaaatgtgtcaggtgctttataagaaaaatacta
aataccattccaggagcataagatgcaaataaaaggcaaaactattaagt
tgtatggagggagaaatacagcactgccttaaatgtcaccctttggtcac
atgtcattagccgtttctgtatcagtcctgattctgtcaggaattcggtg
agtttgcatttttatttttattcatgaatttgcagagcagtctgtgcttc
gcttccagccaccttcactcccctctgtcccttgaggactgggtcatgtt
cacagcctgcattagtcaaggttctccaaagaaacagctatctggaggag
tggttggggtgaggggatc
gaattcaggaccagacaactgagtattcagctgcagagcatctaagacca
aagggagacaggagtggataccgtcttcgtctgattaggtctctaagttc
agatgatcatcaggaaaggcaggagtgggaggtgcctgaaaggcacagca
cagccaggcagatttaagtggcatacatcacaggggtgaatcctcacaat
ggcaaactcatcaatgagagtgaaggagagattaccacatgcaacagtgg
gggcgcatctcacaactttaatgtcgagcgcaataaataggaaacagaaa
cacctatgtgatgagattctacctaaacgctagcaccggtataatgaatc
cacagtgagaggaatatgaataatggctgtaggtagggtgtgtgttctga
ctggaagggaacatgaggaacatttccaggtgggtgggatatactatctt
tctatgggtgatagttccccagttgcatatatttgtcaaaactcaaataa
gattctgctatggagcataccttcaagctcagcactctggaggctgagac
aggaggattgtgagttgaagtcagtctatattacattgtgatttcttatc
ttaatactgttccccacaaataaatacttgcattttgggatcttcagggt
atattcatgtattttcatggtgtggaatatagaaattatttaatgtcatc
ttatttacgaaccagtaaggatagaaagaaattaagtggaagaggtctct
tttactgactaattcgcttggtcacacagggcaagtgagatggagtgtga
tttttgaatttgagcgaatcaatggtattctgtgtggggaactcactcga
atgtctttaaatcacagccaactctggagaataaatatgccttcccttgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143435347_143436359
seq2: B6Ng01-124J19.b_47_1064

seq1  GAATTCTCCTTCCTCCAGATTTGGAAGTTGGACCGCAACGTGATCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCCTCCAGATTTGGAAGTTGGACCGCAACGTGATCTGTGA  50

seq1  CTTAGCACATCACAGACACAGTCAATGTGAATGGATCTGGGGAGCACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACATCACAGACACAGTCAATGTGAATGGATCTGGGGAGCACTTG  100

seq1  AAGAAGCATCTTATTACTAAACCTTGTGGAAAGTGCTAAGAATATTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCATCTTATTACTAAACCTTGTGGAAAGTGCTAAGAATATTCCAC  150

seq1  ATGACCATAATTTTCAATCTTTACTCATAAGCTGCTTCTTATGTGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATAATTTTCAATCTTTACTCATAAGCTGCTTCTTATGTGAATAT  200

seq1  TAATTGATAAAATGCAATGTTCAAAACCTGAAGAAAATACACAAATGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATAAAATGCAATGTTCAAAACCTGAAGAAAATACACAAATGCAG  250

seq1  GTCAACGATGGCAAAGATATCTCACAAAATAATTCTGGATAGAAAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACGATGGCAAAGATATCTCACAAAATAATTCTGGATAGAAAATGAC  300

seq1  GCTGCCATTGTGTGCTGTTCCTGCATTCCCCAAAGTGAACAAATTCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATTGTGTGCTGTTCCTGCATTCCCCAAAGTGAACAAATTCTAGG  350

seq1  GAATGATATGGAGACTTATCTTGGAACCTCATTGCTGGAAAATAACCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATATGGAGACTTATCTTGGAACCTCATTGCTGGAAAATAACCCAA  400

seq1  GAGGCCACAGAACCTGACACGCGTGGCTATTTGAAAGTCATCTGGAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACAGAACCTGACACGCGTGGCTATTTGAAAGTCATCTGGAGTGA  450

seq1  AAACGAGCCAGAATCAGCATAGAGTGTACAACAAACAAAACCCAGATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGCCAGAATCAGCATAGAGTGTACAACAAACAAAACCCAGATGTC  500

seq1  TCTTGAAGAAAAGGTTAACTGAAGGCTAATGCTAAAAGAGTTTTAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGAAAAGGTTAACTGAAGGCTAATGCTAAAAGAGTTTTAAAGGC  550

seq1  AGGAGAAAGAAGACTGGAGATAAATAGGGAAATTATATGCAGCCTCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAGAAGACTGGAGATAAATAGGGAAATTATATGCAGCCTCCATA  600

seq1  GGAGTTGGAAGAGAAAGCTCTCTGCACAGAATTTTTAAAAGAAAATTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGAAGAGAAAGCTCTCTGCACAGAATTTTTAAAAGAAAATTAAC  650

seq1  CTTTTCTTTAACACCTAAAATGTGTCAGGTGCTTTATAAGAAAAATACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTAACACCTAAAATGTGTCAGGTGCTTTATAAGAAAAATACTA  700

seq1  AATACCATTCCAGGAGCATAAGATGCAAATAAAAGGCAAAACTATTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATTCCAGGAGCATAAGATGCAAATAAAAGGCAAAACTATTAAGT  750

seq1  TGTATGGAGGGAGAAATACAGCACTGCCTTAAATGTCACCCTTTGGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGAGGGAGAAATACAGCACTGCCTTAAATGTCACCCTTTGGTCAC  800

seq1  ATGTCATTAGCCGTTTCTGTATCAGTCCTGATTCTGTCAGGAATTCGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTAGCCGTTTCTGTATCAGTCCTGATTCTGTCAGGAATTCGGTG  850

seq1  AGTTTGCATTTTTA-TTTTATTCATGAA-TTGCAGAGCAGTCTGTGCTTC  898
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  AGTTTGCATTTTTATTTTTATTCATGAATTTGCAGAGCAGTCTGTGCTTC  900

seq1  GCTTCCCAGCACCTTCACTCCCCTCTGTCCCTTGAGGACTGGGTCATGTT  948
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGCCACCTTCACTCCCCTCTGTCCCTTGAGGACTGGGTCATGTT  950

seq1  CACAGCCTGCATTAGTCAAGGTTCTCCAAGGAAACAGC-ACCTGGAGGAG  997
      ||||||||||||||||||||||||||||| |||||||| | |||||||||
seq2  CACAGCCTGCATTAGTCAAGGTTCTCCAAAGAAACAGCTATCTGGAGGAG  1000

seq1  GGGT--GGGGGAGGGGAT  1013
       |||  ||| ||||||||
seq2  TGGTTGGGGTGAGGGGAT  1018

seq1: chr2_143627505_143628404
seq2: B6Ng01-124J19.g_71_970 (reverse)

seq1  ACAAGGGAACGGCTTGATTTATTCCTCACGAGGTAGGCTGTGATTTAAAG  50
      ||||||||| ||| | ||||||| |||  || || |||||||||||||||
seq2  ACAAGGGAA-GGCAT-ATTTATT-CTCCAGA-GTTGGCTGTGATTTAAAG  46

seq1  ACATCCGAGTGAGTTCCCCACACAGAAT-CCATTGATTCGCTCAAATATC  99
      |||| ||||||||||||||||||||||| |||||||||||||||||| ||
seq2  ACATTCGAGTGAGTTCCCCACACAGAATACCATTGATTCGCTCAAAT-TC  95

seq1  AAATATCACACTCCATCCCACTTGCCCTGTGTGA-CAAGCGAATTAGTCA  148
      ||| ||||||||||||| |||||||||||||||| |||||||||||||||
seq2  AAAAATCACACTCCATCTCACTTGCCCTGTGTGACCAAGCGAATTAGTCA  145

seq1  GT-AAAGAGACCTCTT-CACTTAATTTCTTTCTATCCTTACTGGTTCGTT  196
      || ||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  GTAAAAGAGACCTCTTCCACTTAATTTCTTTCTATCCTTACTGGTTCGTA  195

seq1  AATAAGATGACATT-AATAATTTCTATATTCCACACCATGAAAATACATG  245
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATAAGATGACATTAAATAATTTCTATATTCCACACCATGAAAATACATG  245

seq1  AATATACCCTGAAGATCCCAAAATGCAAGTATTTATTTGTGGGGAACAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCCTGAAGATCCCAAAATGCAAGTATTTATTTGTGGGGAACAGT  295

seq1  ATTAAGATAAGAAATCACAATGTAATATAGACTGACTTCAACTCACAATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATAAGAAATCACAATGTAATATAGACTGACTTCAACTCACAATC  345

seq1  CTCCTGTCTCAGCCTCCAGAGTGCTGAGCTTGAAGGTATGCTCCATAGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCTCAGCCTCCAGAGTGCTGAGCTTGAAGGTATGCTCCATAGCA  395

seq1  GAATCTTATTTGAGTTTTGACAAATATATGCAACTGGGGAACTATCACCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTATTTGAGTTTTGACAAATATATGCAACTGGGGAACTATCACCC  445

seq1  ATAGAAAGATAGTATATCCCACCCACCTGGAAATGTTCCTCATGTTCCCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGATAGTATATCCCACCCACCTGGAAATGTTCCTCATGTTCCCT  495

seq1  TCCAGTCAGAACACACACCCTACCTACAGCCATTATTCATATTCCTCTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCAGAACACACACCCTACCTACAGCCATTATTCATATTCCTCTCA  545

seq1  CTGTGGATTCATTATACCGGTGCTAGCGTTTAGGTAGAATCTCATCACAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATTCATTATACCGGTGCTAGCGTTTAGGTAGAATCTCATCACAT  595

seq1  AGGTGTTTCTGTTTCCTATTTATTGCGCTCGACATTAAAGTTGTGAGATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTCTGTTTCCTATTTATTGCGCTCGACATTAAAGTTGTGAGATG  645

seq1  CGCCCCCACTGTTGCATGTGGTAATCTCTCCTTCACTCTCATTGATGAGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCCACTGTTGCATGTGGTAATCTCTCCTTCACTCTCATTGATGAGT  695

seq1  TTGCCATTGTGAGGATTCACCCCTGTGATGTATGCCACTTAAATCTGCCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATTGTGAGGATTCACCCCTGTGATGTATGCCACTTAAATCTGCCT  745

seq1  GGCTGTGCTGTGCCTTTCAGGCACCTCCCACTCCTGCCTTTCCTGATGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCTGTGCCTTTCAGGCACCTCCCACTCCTGCCTTTCCTGATGAT  795

seq1  CATCTGAACTTAGAGACCTAATCAGACGAAGACGGTATCCACTCCTGTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAACTTAGAGACCTAATCAGACGAAGACGGTATCCACTCCTGTCT  845

seq1  CCCTTTGGTCTTAGATGCTCTGCAGCTGAATACTCAGTTGTCTGGTCCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGTCTTAGATGCTCTGCAGCTGAATACTCAGTTGTCTGGTCCTG  895

seq1  AATTC  900
      |||||
seq2  AATTC  900