BAC Information

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BAC

Clone NameB6Ng01-125H04
Chromosome2 (Build37)17 (Build37)
Map Location 141,840,127 - 141,841,25345,053,192 - 45,053,663
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125H04.bB6Ng01-125H04.g
ACCDH928082DH928083
length1,116914
definitionDH928082|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H04, 5' end.DH928083|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(141,840,127 - 141,841,253)(45,053,192 - 45,053,663)
sequence
gaattcctgtttcaaaatggagttgaatggaaaattgaattgaatgaaaa
aaatctagacattccaaaagaggatttaggaggctctgtccttctaatcc
agatgagcttagttgccaggcaaacaccagatcaccggtcccctatgcag
tcataaagcaatgctttccatctcctgaagggcagcaatatgaagataaa
tgtgggagtggggtagggtagcctactggatcctgtcaatgacaaagata
tatggttggggccacaacacaaagacaacaatgataatagaatgactctt
attatgaagcaactccatttcacgctttagagcattcatctgacttaata
attttcctcaccctacatgccagtgcacacatcagcttataagcctcttt
tctctttgactcaaattcatatttttttcagaaatatttaatgaggatta
atgacttttgggtgaaaaaaatcccatggaaaaatctattctactctatg
taacacatagccagaagtccactcatcaatctgtaccccgctctgtgaga
taccttctagtatctaggtagttttgtaggagttccatgctgtttgctac
ctgctgatctttccccactgtttcacagttgatgtgaacatcctgaacac
aggaatgcttggttggtagatgacagaagcttccattttttccctttccc
tcccttctccactttacttccttcctgtccttaattcccagtgatcactc
ttcaaagccttgcagaacctggagaactaactccacccaatcactaataa
ctgtagaaactgaatacatgtaaatgagactcagttgtttaacacaaact
gtcaccattattgttgtttctatcaagccatttttttctttctacatctc
ttgaatagccaagtccttaaaaagtccatatattataagatatttaggag
gcatattatttccatatgaattaatgtgttttttttttcactgtctagga
ttaacatatgctttggtcaaaatatttgaccatgggatatctcagatttt
tctcaagtggcattttctataaaggataggggttttctaagtcattggta
tcggagtacctgagaa
gaattctccttaagagggacgggttttcgttttctccttctcttgcttct
tgctctcttgcttcttgctctcttgcttcttgctctcttgcttcctgcac
cctggctcctgaagatgtaagaaataaagctttgccgcagaagattctgg
tctgtggtgttcttcctggccggtcgtgagaacgcgtctaataacacagc
acaatgttgggtcctgtttgtgtagccagtctgttagtctatgtcttctt
attggagagttgagtccattgatatttagagatgttaaagaaaagtaatt
gttgcttcctattatttttgttgttaaagttggcattctgttcttgtggc
tttctttttttagatttgttgagggagtactttcttgctttttctagaac
ttggtttttgtccttttttttcctctgttattatcctttgaagggctgga
ttcgtggaaagataacgtttgaatttttttttttttttttttttttttgt
gtgtgtgggtgtgtggaatactttggtttctccatctatggcaattgaaa
gtttggctgggtataatagcctgggttggcatttgtgttctcttagtgtc
tgtataacatctgtccaggatcttcctgctttcatagtctctggtgaaaa
ttatggtgtaattctaataggcctgccttttatatgttacttgacctttt
tcccttactgctttttaatattctatcttttttagtgcattttttttgtc
tggttattatgtgtcgggagcaatgtcctttctggttcagtctatatgga
gttctgtaggcttcttgtatgttcatggccatctctttctttagttggga
agtttcttctataatttgttgaagatattttctggcctttagttgaaaat
cttcatctcatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141840127_141841253
seq2: B6Ng01-125H04.b_49_1164

seq1  GAATTCCTGTTTCAAAATGGAGTTGAATGGAAAATTGAATTGAATGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTTCAAAATGGAGTTGAATGGAAAATTGAATTGAATGAAAA  50

seq1  AAATCTAGACATTCCAAAAGAGGATTTAGGAGGCTCTGTCCTTCTAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGACATTCCAAAAGAGGATTTAGGAGGCTCTGTCCTTCTAATCC  100

seq1  AGATGAGCTTAGTTGCCAGGCAAACACCAGATCACCGGTCCCCTATGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGCTTAGTTGCCAGGCAAACACCAGATCACCGGTCCCCTATGCAG  150

seq1  TCATAAAGCAATGCTTTCCATCTCCTGAAGGGCAGCAATATGAAGATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGCAATGCTTTCCATCTCCTGAAGGGCAGCAATATGAAGATAAA  200

seq1  TGTGGGAGTGGGGTAGGGTAGCCTACTGGATCCTGTCAATGACAAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGTGGGGTAGGGTAGCCTACTGGATCCTGTCAATGACAAAGATA  250

seq1  TATGGTTGGGGCCACAACACAAAGACAACAATGATAATAGAATGACTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTGGGGCCACAACACAAAGACAACAATGATAATAGAATGACTCTT  300

seq1  ATTATGAAGCAACTCCATTTCACGCTTTAGAGCATTCATCTGACTTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAGCAACTCCATTTCACGCTTTAGAGCATTCATCTGACTTAATA  350

seq1  ATTTTCCTCACCCTACATGCCAGTGCACACATCAGCTTATAAGCCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTCACCCTACATGCCAGTGCACACATCAGCTTATAAGCCTCTTT  400

seq1  TCTCTTTGACTCAAATTCATATTTTTTTCAGAAATATTTAATGAGGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGACTCAAATTCATATTTTTTTCAGAAATATTTAATGAGGATTA  450

seq1  ATGACTTTTGGGTGAAAAAAATCCCATGGAAAAATCTATTCTACTCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTTGGGTGAAAAAAATCCCATGGAAAAATCTATTCTACTCTATG  500

seq1  TAACACATAGCCAGAAGTCCACTCATCAATCTGTACCCCGCTCTGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATAGCCAGAAGTCCACTCATCAATCTGTACCCCGCTCTGTGAGA  550

seq1  TACCTTCTAGTATCTAGGTAGTTTTGTAGGAGTTCCATGCTGTTTGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTAGTATCTAGGTAGTTTTGTAGGAGTTCCATGCTGTTTGCTAC  600

seq1  CTGCTGATCTTTCCCCACTGTTTCACAGTTGATGTGAACATCCTGAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATCTTTCCCCACTGTTTCACAGTTGATGTGAACATCCTGAACAC  650

seq1  AGGAATGCTTGGTTGGTAGATGACAGAAGCTTCCATTTTTTCCCTTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCTTGGTTGGTAGATGACAGAAGCTTCCATTTTTTCCCTTTCCC  700

seq1  TCCCTTCTCCACTTTACTTCCTTCCTGTCCTTAATTCCCAGTGATCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTCCACTTTACTTCCTTCCTGTCCTTAATTCCCAGTGATCACTC  750

seq1  TTCAAAGCCTTGCAGAACCTGGAGAACTAAACTCCACCCAATCACTAATA  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCAAAGCCTTGCAGAACCTGGAGAACT-AACTCCACCCAATCACTAATA  799

seq1  ACTGTAGAAAACTGAATACATGTAAATGAGACTCAGTTGTTAAACACAAA  850
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTGTAG-AAACTGAATACATGTAAATGAGACTCAGTTGTTTAACACAAA  848

seq1  CTGTCACCATTATTGTGTTTTCTATCAAGCCATGTTTT--CTTCTACATC  898
      ||||||||||||||||  ||||||||||||||| ||||   |||||||||
seq2  CTGTCACCATTATTGTTGTTTCTATCAAGCCATTTTTTTCTTTCTACATC  898

seq1  TCTTGAATAGCCAAGTCCTTAAAAAGTCCATATA-TATAAGATTATTTAG  947
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TCTTGAATAGCCAAGTCCTTAAAAAGTCCATATATTATAAGA-TATTTAG  947

seq1  GAGGCATAATTATTTCCATATGAATTAATGTTGTTTTTTTTCTCAACTGT  997
      ||||||| |||||||||||||||||||||| |||||||||| || |||||
seq2  GAGGCAT-ATTATTTCCATATGAATTAATG-TGTTTTTTTTTTC-ACTGT  994

seq1  CTCAGGATATACATATTGCTTTGGTCAAAATAATTGACCATGGGATATCT  1047
      || |||||  ||||| |||||||||||||||| |||||||||||||||||
seq2  CT-AGGATTAACATA-TGCTTTGGTCAAAATATTTGACCATGGGATATCT  1042

seq1  CAAGATTTTTTTTTAAAGTGGCATTTTCATTAAAAGATTAGTGGTTTTCA  1097
      | |||  ||||| | |||||||||||||  |||| || ||| ||||||| 
seq2  C-AGA--TTTTTCTCAAGTGGCATTTTCTATAAAGGA-TAGGGGTTTTCT  1088

seq1  TAGTCCATTTGGTATCAGAGTACCTGAGAA  1127
       ||||   |||||||| |||||||||||||
seq2  AAGTC--ATTGGTATCGGAGTACCTGAGAA  1116

seq1: chr17_45053192_45053663
seq2: B6Ng01-125H04.g_480_979 (reverse)

seq1  TAGATGAGAATGAAGATTTTCAACTTAAAAGGCCAGCAAATATCTTCAAC  50
      |||||||| ||||||||||||||||  ||||||||| |||||||||||||
seq2  TAGATGAG-ATGAAGATTTTCAACT--AAAGGCCAGAAAATATCTTCAAC  47

seq1  AAATTTATAGAAGAAAACTTCCTAAAACTAAAGAAAGAGATGCCCATGAA  100
      ||| ||||||||| ||||||||   ||||||||||||||||| |||||||
seq2  AAA-TTATAGAAG-AAACTTCC--CAACTAAAGAAAGAGATGGCCATGAA  93

seq1  CATATAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATT  150
      |||| |||||||||||||||||||| |||||||| |||||||| || |||
seq2  CATACAAGAAGCCTACAGAACTCCATATAGACTGAACCAGAAAGGACATT  143

seq1  CCTCCCTACACATAATAATCAGA-ACAACAAATGCACTAAATAAAGATAG  199
       ||||| ||||||||||| |||| | || |||||||||||| ||||||||
seq2  GCTCCCGACACATAATAACCAGACAAAAAAAATGCACTAAA-AAAGATAG  192

seq1  AATATT-AAAAGCAGTAAGGGAAAAAGGTCAAGTAACATAT-AAAGGCAG  247
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  AATATTAAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAAGGCAG  242

seq1  GCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGACAGAA  297
      |||||| |||||||||||| | ||||||||||||||||||||||   |||
seq2  GCCTATTAGAATTACACCATAATTTTCACCAGAGACTATGAAAGCAGGAA  292

seq1  GATCCTGGACAGATGTTAT----ACCCTAAGAGAACACAAATGCCAGCCC  343
      |||||||||||||||||||    || |||||||||||||||||||| |||
seq2  GATCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAACCC  342

seq1  ATGCTTCTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACTAA  393
      | |||  |||||||||||||||| |||||| |||||||||||||||| ||
seq2  AGGCTATTATACCCAGCCAAACTTTCAATTGCCATAGATGGAGAAACCAA  392

seq1  AGTATTCC---------------------------ATGACAAAACCAAAT  416
      ||||||||                           |  | ||||  ||||
seq2  AGTATTCCACACACCCACACACACAAAAAAAAAAAAAAAAAAAAAAAAAT  442

seq1  TCACACATTATCTTTCCTCGAATCCAGCCCTTCAAAGGATAATAACAGA-  465
      ||| || |||||||||| ||||||||||||||||||||||||||||||| 
seq2  TCAAACGTTATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAG  492

seq1  -AAAAAAA  472
       |||||||
seq2  GAAAAAAA  500