BAC Information

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BAC

Clone NameB6Ng01-125J10
Chromosome2 (Build37)
Map Location 103,989,965 - 104,116,854
singlet/doubletdoublet
Overlap geneD430041D05Rik
Upstream geneEhf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik
Downstream geneLOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125J10.bB6Ng01-125J10.g
ACCDH928182DH928183
length1,129614
definitionDH928182|Mus musculus domesticus DNA, BAC clone: B6Ng01-125J10, 5' end.DH928183|Mus musculus domesticus DNA, BAC clone: B6Ng01-125J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,989,965 - 103,991,093)(104,116,241 - 104,116,854)
sequence
gaattctgtttggtccacaaagacctttatatccccagatgctggctgga
aggctggagaactgagcatggaggatgcagtggggcatacagtgcccagt
gcagtggggcaggcacagaaaatgtgcagggacaacatttccaggctcaa
gagattggataggaaggccagacaggtggaagaacaagagcaaagaggaa
cagaggggtaagctgggtgaattgtgttcccaaagcatcctgtctaaaag
caactgaatgctcgtccaccgtatacccattgtgttggacacacttgtga
ggagtaaaggctgagcctctgtagtggacccgacgcccgctcaggcatca
tgtgcatcgtgtgcacaggcccactctccgtgcataatgctggccttggt
ggttcctccagccctgtctcctgacttctgggattacagacatgcaccac
cacacctggcctccttctccattaacacacatgttcatctggggccattg
gggaggagggagcaggatagctgactaaatctcttcaggctaccgtaaca
aagtatcactggctagggagccgatgtagaacagacagttatttctttat
actcatgaaggccggggactccagtgtctggtgaaaggctcctttcttaa
ctcccgccttttcctgtcacccacatgactgaaagcagcagggcagctgt
gtggaggctccttctataagaacattaatcctattcgcaggtgtgcacag
gcccaccctcacaaaccaaccacttccccaagacctatctactaaagcca
ttactgtaccattgcggaatttggaacaagaatcatgtagagggatacaa
aacattcagacatttgggatgggaggcctacatggcaggattgtggctac
tctgatgggtccctcgagaagggtagattctgagaccatgggctggtaac
ccttcatgggtttcagcagagaagagcccatttcaccaagttctggggtg
gatccttgcagaaccggcttgggtgcatcagtgggtcaggtgaagccagg
agaccaactcaaagaaataaatggattgtaggccttaagtttgagttatg
ggttttaaatttactccaggatgaaataa
gaattccaggattcaggaggctgcagcaggaagatcatgaatttatccac
cctgggctccatagtgataactttgtctcaagagtacaatgctgtggttt
gaatgtgataggtctctgtcgctgtgtgtgtctgaacacttggtctctaa
ctggggtgctgttgggtaagattgtggagcctcaccagagaaagtggatc
catgggttaccagtgccctaggtacccactgcatagagtggtgttgaaac
ctcaggaaaagaggcttatttatagaactgataaacaagcttagtgtgat
agctgttgggatcgataactaaagtgtaattccgtggctttggggaataa
tatacagcccctctccgtgggttaaagtgaagaaaagaatgtggacagag
ttggatgtgcaatgtgctcacagtctgggttgtgaaccacagcctttcca
agaacagagtcaggaagtagggtccttgtggaatgacatgggaggtggtg
agggaagcgggagtggcaggacccttctttttcttctacctgcctagatt
gattctaagttttctttcatggtcattgacttagttaccttcttcatctc
tgtgaccaaaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_103989965_103991093
seq2: B6Ng01-125J10.b_47_1175

seq1  GAATTCTGTTTGGTCCACAAAGACCTTTATATCCCCAGATGCTGGCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTGGTCCACAAAGACCTTTATATCCCCAGATGCTGGCTGGA  50

seq1  AGGCTGGAGAACTGAGCATGGAGGATGCAGTGGGGCATACAGTGCCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGAGAACTGAGCATGGAGGATGCAGTGGGGCATACAGTGCCCAGT  100

seq1  GCAGTGGGGCAGGCACAGAAAATGTGCAGGGACAACATTTCCAGGCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGGCAGGCACAGAAAATGTGCAGGGACAACATTTCCAGGCTCAA  150

seq1  GAGATTGGATAGGAAGGCCAGACAGGTGGAAGAACAAGAGCAAAGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGATAGGAAGGCCAGACAGGTGGAAGAACAAGAGCAAAGAGGAA  200

seq1  CAGAGGGGTAAGCTGGGTGAATTGTGTTCCCAAAGCATCCTGTCTAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGTAAGCTGGGTGAATTGTGTTCCCAAAGCATCCTGTCTAAAAG  250

seq1  CAACTGAATGCTCGTCCACCGTATACCCATTGTGTTGGACACACTTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAATGCTCGTCCACCGTATACCCATTGTGTTGGACACACTTGTGA  300

seq1  GGAGTAAAGGCTGAGCCTCTGTAGTGGACCCGACGCCCGCTCAGGCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAAGGCTGAGCCTCTGTAGTGGACCCGACGCCCGCTCAGGCATCA  350

seq1  TGTGCATCGTGTGCACAGGCCCACTCTCCGTGCATAATGCTGGCCTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATCGTGTGCACAGGCCCACTCTCCGTGCATAATGCTGGCCTTGGT  400

seq1  GGTTCCTCCAGCCCTGTCTCCTGACTTCTGGGATTACAGACATGCACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTCCAGCCCTGTCTCCTGACTTCTGGGATTACAGACATGCACCAC  450

seq1  CACACCTGGCCTCCTTCTCCATTAACACACATGTTCATCTGGGGCCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGGCCTCCTTCTCCATTAACACACATGTTCATCTGGGGCCATTG  500

seq1  GGGAGGAGGGAGCAGGATAGCTGACTAAATCTCTTCAGGCTACCGTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGGGAGCAGGATAGCTGACTAAATCTCTTCAGGCTACCGTAACA  550

seq1  AAGTATCACTGGCTAGGGAGCCGATGTAGAACAGACAGTTATTTC-TTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGTATCACTGGCTAGGGAGCCGATGTAGAACAGACAGTTATTTCTTTAT  600

seq1  ACTCATGAAGGCCGGGGACTCCAGTGTCTGGTGAAAGGCTCCTTTCTTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGAAGGCCGGGGACTCCAGTGTCTGGTGAAAGGCTCCTTTCTTAA  650

seq1  CTCCCGCCTTTTCCTGTCACCCACATGACTG-AAGCAGCAGGGCAGCTGT  698
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCCCGCCTTTTCCTGTCACCCACATGACTGAAAGCAGCAGGGCAGCTGT  700

seq1  GTGGAGGCTCCTTCTATAAGAACATTAATCCTATTCGCAAGTGTGCACAG  748
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGGAGGCTCCTTCTATAAGAACATTAATCCTATTCGCAGGTGTGCACAG  750

seq1  GCCCACCCTCACAAACCAACCACTTCCCCAAGACCTATCTACTAAAGCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCTCACAAACCAACCACTTCCCCAAGACCTATCTACTAAAGCCA  800

seq1  TTACTGTACCATTGCGGAATTTGGAACAAGAATCAGGTAGAGGGATAC-A  847
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  TTACTGTACCATTGCGGAATTTGGAACAAGAATCATGTAGAGGGATACAA  850

seq1  AACATTCAGACATTTGGGATGGGAGGGCGTACATGGCAGGATTGTGGCTA  897
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  AACATTCAGACATTTGGGATGGGA-GGCCTACATGGCAGGATTGTGGCTA  899

seq1  CTCTGAT-GGTCCCTCGAG-AGGGTAGGATTCTGAGACCATGGGCTGGTA  945
      ||||||| ||||||||||| |||||| |||||||||||||||||||||||
seq2  CTCTGATGGGTCCCTCGAGAAGGGTA-GATTCTGAGACCATGGGCTGGTA  948

seq1  ACCCTTCATGGGTTTCAGCAGAGGAGAAGCCAATTTCAGCAAGGTCT-GG  994
      ||||||||||||||||||||||| || |||| |||||| |||| ||| ||
seq2  ACCCTTCATGGGTTTCAGCAGAGAAG-AGCCCATTTCACCAAGTTCTGGG  997

seq1  GTGGAT-CTGGCAGAAACGGGCTCTGGGTTGCATCAGTGGTCCAAGTGAG  1043
      |||||| || |||||| |||   || || |||||||||||  || |||| 
seq2  GTGGATCCTTGCAGAACCGG---CTTGGGTGCATCAGTGGGTCAGGTGAA  1044

seq1  GCCAGGAGGACCCACTCAAAGGAAGTAATTGGATTG-ATGCCTTAAGTTT  1092
      ||||||| |||| ||||||| ||| ||| ||||||| | |||||||||||
seq2  GCCAGGA-GACCAACTCAAA-GAAATAAATGGATTGTAGGCCTTAAGTTT  1092

seq1  GAGTT-TGGGGTTTAAATTTCATCACAGGATGAAATAA  1129
      ||||| |||| |||||||||  || |||||||||||||
seq2  GAGTTATGGGTTTTAAATTTACTC-CAGGATGAAATAA  1129

seq1: chr2_104116241_104116854
seq2: B6Ng01-125J10.g_68_681 (reverse)

seq1  GTATTTTGGTCACAGAGATGAAGAAGGTAACTAAGTCAATGACCATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGGTCACAGAGATGAAGAAGGTAACTAAGTCAATGACCATGAAA  50

seq1  GAAAACTTAGAATCAATCTAGGCAGGTAGAAGAAAAAGAAGGGTCCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTAGAATCAATCTAGGCAGGTAGAAGAAAAAGAAGGGTCCTGCC  100

seq1  ACTCCCGCTTCCCTCACCACCTCCCATGTCATTCCACAAGGACCCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCGCTTCCCTCACCACCTCCCATGTCATTCCACAAGGACCCTACTT  150

seq1  CCTGACTCTGTTCTTGGAAAGGCTGTGGTTCACAACCCAGACTGTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCTGTTCTTGGAAAGGCTGTGGTTCACAACCCAGACTGTGAGCA  200

seq1  CATTGCACATCCAACTCTGTCCACATTCTTTTCTTCACTTTAACCCACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCACATCCAACTCTGTCCACATTCTTTTCTTCACTTTAACCCACGG  250

seq1  AGAGGGGCTGTATATTATTCCCCAAAGCCACGGAATTACACTTTAGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCTGTATATTATTCCCCAAAGCCACGGAATTACACTTTAGTTAT  300

seq1  CGATCCCAACAGCTATCACACTAAGCTTGTTTATCAGTTCTATAAATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCCCAACAGCTATCACACTAAGCTTGTTTATCAGTTCTATAAATAAG  350

seq1  CCTCTTTTCCTGAGGTTTCAACACCACTCTATGCAGTGGGTACCTAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTCCTGAGGTTTCAACACCACTCTATGCAGTGGGTACCTAGGGC  400

seq1  ACTGGTAACCCATGGATCCACTTTCTCTGGTGAGGCTCCACAATCTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAACCCATGGATCCACTTTCTCTGGTGAGGCTCCACAATCTTACC  450

seq1  CAACAGCACCCCAGTTAGAGACCAAGTGTTCAGACACACACAGCGACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCACCCCAGTTAGAGACCAAGTGTTCAGACACACACAGCGACAGA  500

seq1  GACCTATCACATTCAAACCACAGCATTGTACTCTTGAGACAAAGTTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATCACATTCAAACCACAGCATTGTACTCTTGAGACAAAGTTATCA  550

seq1  CTATGGAGCCCAGGGTGGATAAATTCATGATCTTCCTGCTGCAGCCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGCCCAGGGTGGATAAATTCATGATCTTCCTGCTGCAGCCTCCT  600

seq1  GAATCCTGGAATTC  614
      ||||||||||||||
seq2  GAATCCTGGAATTC  614