BAC Information

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BAC

Clone NameB6Ng01-125J16
Chromosome2 (Build37)
Map Location 8,881,567 - 9,046,589
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC672230
Downstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125J16.bB6Ng01-125J16.g
ACCDH928193DH928194
length1,096559
definitionDH928193|Mus musculus domesticus DNA, BAC clone: B6Ng01-125J16, 5' end.DH928194|Mus musculus domesticus DNA, BAC clone: B6Ng01-125J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,045,476 - 9,046,589)(8,881,567 - 8,882,131)
sequence
gaattcagttggcgaagctcactatttgtttgacaggtgtgttgattata
tgcacttcaaaaagaaaagtaactctgttggcattgcttcatcattttgg
ttattagagaatagaaggttttttttttttttctaaacttatttttcttc
acaaaagcagtttttatttgaggcaaggagaagtctgacccataggatta
cagttctaagcactgaaatgtaaatgttagtggcatgacttgggctataa
atcctgcttctctttggttggaaagggtatttgtcttaaagtcctccagg
taggtaagaagaaagaccaagaaagtctggaagaaatatctcagcgagtg
gtactgccctccagattccatgtcaaatgaacttataacttcttgtctcc
acagtcatggttattcatgtcatttaaaatcttaatttgcttctattttc
ttatagacttgtcagtgtttacaaaatatgggagagttcttcctttgaaa
cacattttgtctctaataatttagctacaagatgagtctgtatagtaaaa
gaaaaatgaagatttagtgactttatctccaattctcgataccaatattt
gaattcatgtgtgcataaaaatacaaaagagagagagagatttaaaataa
ccttcaagagccaagactcacttattgaaggcaggaaaatgctattcacc
aaattgctcaactcttctaattacagacagtcaccatgatttaatgcaag
gtaatcgaagataaagcatgaaatatacagctcccagcggctcatctcta
acgtgcggtacccatcgcccatgcattagaaggggccatatgtcctcatg
tactgtgggaaaatgtccattcctttctttgtaagctggatgacacaatt
taaagagattccaatgcagatcacattcctctgaaataagctagaatggg
gctcttgattgcttcactctcaagagctgcatgtgtaaaataacagagat
ggagattcccatcagagaaaatctaggaaaacaaggctcatctgtacaat
atcttatgtcattatattcccctgtacactcactccccttcacaaa

cataaaaggctgagaaagacagagccagactctaagtcaatagaaagtga
ggcggagaaaaggctctggctaccaagaaagtgaaaacttcactgaaatc
aattgctacccagattacaatgcacagcatttggttcccacacttgtttt
ctttcacaaaatattaccgctgaattcttttctcataagccacaatcttc
gctttctgactacattacagtgttctccgtttgtcatctgaagtccttcc
taggcatcttcataagatttttctctatatgtatataaaatccctgcaaa
gcacctagtcaaatgaatttaaaaaattttaaaactgaagtagaatttta
aacccaaaacaaatgggtagaaagaagcactatttagaattgtaaatact
actttcagtttaggaccctataccaattatcagttggattgaatcacaaa
ataagtggaagtatttcccttgtcacacatgcatattctcatgcaaacac
atgtgctctcccctttttgagtttatgaatgtgtgtgtgtgtgtgtgtgt
gtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9045476_9046589
seq2: B6Ng01-125J16.b_48_1143 (reverse)

seq1  TTTGTGAAGGTGGAGTGAGGTTGTACCAGGGGGAAAATATAAATGACAT-  49
      |||||||||| ||||||||  |||| ||||||   ||||| |||||||| 
seq2  TTTGTGAAGG-GGAGTGAG--TGTA-CAGGGG---AATAT-AATGACATA  42

seq1  AGATATTGTACAGATGAGCCTTGTTTTCCTAGATTTTCCTCTTGATGGGA  99
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  AGATATTGTACAGATGAGCCTTGTTTTCCTAGATTTT-CTC-TGATGGGA  90

seq1  ATCTCCATTCTCCTGTTATTTTTACACATGCAGCTCTTTGGAGAGTGGAA  149
      ||||||| ||| |||||| |||||||||||||||||||  |||||| |||
seq2  ATCTCCA-TCT-CTGTTA-TTTTACACATGCAGCTCTT--GAGAGT-GAA  134

seq1  GCAATCAAGAGCCCCATTCTAGCTTTATTTCAGGAGGGAATGTGATCTGC  199
      ||||||||||||||||||||||| |||||||||   ||||||||||||||
seq2  GCAATCAAGAGCCCCATTCTAGC-TTATTTCAG--AGGAATGTGATCTGC  181

seq1  ATTGGAATCTCTTTAAATTGTGTCATCCAGCTTACAAAGAAAGGAATGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATCTCTTTAAATTGTGTCATCCAGCTTACAAAGAAAGGAATGGA  231

seq1  CATTTTCCCACAGTACATGAGGACATATGGCCCCTTCTAATGCATGGGCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCCACAGTACATGAGGACATATGGCCCCTTCTAATGCATGGGCG  281

seq1  ATGGGTACCGCACGTTAGAGATGAGCCGCTGGGAGCTGTATATTTCATGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTACCGCACGTTAGAGATGAGCCGCTGGGAGCTGTATATTTCATGC  331

seq1  TTTATCTTCGATTACCTTGCATTAAATCATGGTGACTGTCTGTAATTAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTCGATTACCTTGCATTAAATCATGGTGACTGTCTGTAATTAGA  381

seq1  AGAGTTGAGCAATTTGGTGAATAGCATTTTCCTGCCTTCAATAAGTGAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAGCAATTTGGTGAATAGCATTTTCCTGCCTTCAATAAGTGAGT  431

seq1  CTTGGCTCTTGAAGGTTATTTTAAATCTCTCTCTCTCTTTTGTATTTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCTTGAAGGTTATTTTAAATCTCTCTCTCTCTTTTGTATTTTTA  481

seq1  TGCACACATGAATTCAAATATTGGTATCGAGAATTGGAGATAAAGTCACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACATGAATTCAAATATTGGTATCGAGAATTGGAGATAAAGTCACT  531

seq1  AAATCTTCATTTTTCTTTTACTATACAGACTCATCTTGTAGCTAAATTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCATTTTTCTTTTACTATACAGACTCATCTTGTAGCTAAATTAT  581

seq1  TAGAGACAAAATGTGTTTCAAAGGAAGAACTCTCCCATATTTTGTAAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAAAATGTGTTTCAAAGGAAGAACTCTCCCATATTTTGTAAACA  631

seq1  CTGACAAGTCTATAAGAAAATAGAAGCAAATTAAGATTTTAAATGACATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAGTCTATAAGAAAATAGAAGCAAATTAAGATTTTAAATGACATG  681

seq1  AATAACCATGACTGTGGAGACAAGAAGTTATAAGTTCATTTGACATGGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCATGACTGTGGAGACAAGAAGTTATAAGTTCATTTGACATGGAA  731

seq1  TCTGGAGGGCAGTACCACTCGCTGAGATATTTCTTCCAGACTTTCTTGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGGCAGTACCACTCGCTGAGATATTTCTTCCAGACTTTCTTGGT  781

seq1  CTTTCTTCTTACCTACCTGGAGGACTTTAAGACAAATACCCTTTCCAACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTACCTACCTGGAGGACTTTAAGACAAATACCCTTTCCAACC  831

seq1  AAAGAGAAGCAGGATTTATAGCCCAAGTCATGCCACTAACATTTACATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGCAGGATTTATAGCCCAAGTCATGCCACTAACATTTACATTT  881

seq1  CAGTGCTTAGAACTGTAATCCTATGGGTCAGACTTCTCCTTGCCTCAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTAGAACTGTAATCCTATGGGTCAGACTTCTCCTTGCCTCAAAT  931

seq1  AAAAACTGCTTTTGTGAAGAAAAATAAGTTTAGAAAAAAAAAAAAAACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGCTTTTGTGAAGAAAAATAAGTTTAGAAAAAAAAAAAAAACCT  981

seq1  TCTATTCTCTAATAACCAAAATGATGAAGCAATGCCAACAGAGTTACTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCTCTAATAACCAAAATGATGAAGCAATGCCAACAGAGTTACTTT  1031

seq1  TCTTTTTGAAGTGCATATAATCAACACACCTGTCAAACAAATAGTGAGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGAAGTGCATATAATCAACACACCTGTCAAACAAATAGTGAGCT  1081

seq1  TCGCCAACTGAATTC  1114
      |||||||||||||||
seq2  TCGCCAACTGAATTC  1096


seq1: chr2_8881567_8882131
seq2: B6Ng01-125J16.g_63_627

seq1  GAATTCCATAAAAGGCTGAGAAAGACAGAGCCAGACTCTAAGTCAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAAGGCTGAGAAAGACAGAGCCAGACTCTAAGTCAATAGA  50

seq1  AAGTGAGGCGGAGAAAAGGCTCTGGCTACCAAGAAAGTGAAAACTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGCGGAGAAAAGGCTCTGGCTACCAAGAAAGTGAAAACTTCACT  100

seq1  GAAATCAATTGCTACCCAGATTACAATGCACAGCATTTGGTTCCCACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAATTGCTACCCAGATTACAATGCACAGCATTTGGTTCCCACACT  150

seq1  TGTTTTCTTTCACAAAATATTACCGCTGAATTCTTTTCTCATAAGCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTTCACAAAATATTACCGCTGAATTCTTTTCTCATAAGCCACA  200

seq1  ATCTTCGCTTTCTGACTACATTACAGTGTTCTCCGTTTGTCATCTGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCGCTTTCTGACTACATTACAGTGTTCTCCGTTTGTCATCTGAAGT  250

seq1  CCTTCCTAGGCATCTTCATAAGATTTTTCTCTATATGTATATAAAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTAGGCATCTTCATAAGATTTTTCTCTATATGTATATAAAATCCC  300

seq1  TGCAAAGCACCTAGTCAAATGAATTTAAAAAATTTTAAAACTGAAGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCACCTAGTCAAATGAATTTAAAAAATTTTAAAACTGAAGTAGA  350

seq1  ATTTTAAACCCAAAACAAATGGGTAGAAAGAAGCACTATTTAGAATTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAACCCAAAACAAATGGGTAGAAAGAAGCACTATTTAGAATTGTA  400

seq1  AATACTACTTTCAGTTTAGGACCCTATACCAATTATCAGTTGGATTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTACTTTCAGTTTAGGACCCTATACCAATTATCAGTTGGATTGAAT  450

seq1  CACAAAATAAGTGGAAGTATTTCCCTTGTCACACATGCATATTCTCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATAAGTGGAAGTATTTCCCTTGTCACACATGCATATTCTCATGC  500

seq1  AAACACATGTGCTCTCCCCTTTTTGAGTTTATGAATGTGTGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATGTGCTCTCCCCTTTTTGAGTTTATGAATGTGTGTGTGTGTGT  550

seq1  GTGTGTGTGTGTGTG  565
      |||||||||||||||
seq2  GTGTGTGTGTGTGTG  565


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