BAC Information

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BAC

Clone NameB6Ng01-125P09
Chromosome2 (Build37)5 (Build37)
Map Location 142,776,691 - 142,777,22042,615,078 - 42,616,198
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125P09.bB6Ng01-125P09.g
ACCDH928452DH928453
length9791,107
definitionDH928452|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P09, 5' end.DH928453|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,691 - 142,777,220)(42,615,078 - 42,616,198)
sequence
gaattctttggtcagttctgagcaccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgtcggatattagtccc
ctatctgatttaggataggtaaagattctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtctcatttgccaattctcaatcttacagctcaagccattgttcag
gaattttttccctgtgcccatatcttcaaggcttttccccactttctcct
ctataagtttcagtgtctctggttttatgtgaagctccttgatccactta
gatttgaccttagtacaaggagataagtatggatcgattcgcattcttct
acatgataacaaccagttgtgccagcaccaattgttgaaaatgctgtctt
tcttccactggatggttttagctcccttgtcgaagatcaagtgaccatag
gtgtgtgggttcatttctgggtcttcaattctattccattggtctacttg
tctgtctctataccagtaccatgcagtttttatcacaattgctctgtagt
aaagctttaggtcaggcatggtgattccaccagaggttcttttatccttg
agaagagtttttgctatcctaggttttttgttattccagatgaatttgca
aattgctccttctaattcgttgaagaattgagttggaattttgatgggga
ttgcattgaatctgtagattgcttttggcaagatagccatttttacaatg
ttgatcctgccaatccatgagcatgggagatctttccatcttctgagatc
ttctttaatttctttcttcagagacttgaagtttttatcatacagatctt
tcacttccttagttagagtcacgccgagatattttatattatttgtgact
attgagaggtgttgtttccctaatttctt
gaattcagtgaatggccctattatcattgcctctacctattacctccagt
gtttgggaatgtattcattcactcactcattcatttactccaaaactaat
aaatattatgtttccattttgatctagacattgaactagacatttgtgat
attgcagtaaataatgaaaaataaaaagatagttttaaatagcgttataa
gtatgtcccctcctcattcatacaatactaaatatggtagtgttttgaaa
tggaattggggtgtgtcctggttttctattactgtaagaaaacaccataa
ttaaaagcaagttgggaaggaaagggtttctttggcttacacttctacat
catagttgatcactgaaggaagtcagggcaggaactcaaacagggcagaa
agcaggagacagaagctgacgtaaaagccatggaggggtattctttactg
gcttgctcctcatcacttgttcagtctactaagttatagagctcaggacc
acctgtccaagggtggcatcacccacactggactaggtcctcccacatta
atcattaagaaaatgtcctccaggcttgactatagctcaatcttatggaa
acattttctcagaggatccctcctctatgatgaccctaacttgtgttaag
ttgacataaacctagccagcacagggtgaaaattgattccatccttatgt
agaaaatgtaattcttttcaaaagatacaagatagttccttttcttttct
actacagtgatgctacaagaagaaagtcatctatgaaccagaaaacagac
cctctttaaacactaaatttaagaggatctttatttggggttttccagtc
cctagagctgcatagaatcaatgtgtgctgtttatagccattagggatat
agcacttagttatagcagtgcgaataaattaagacaacagtgtaaatgtg
atgaagaatagcacagaagtgtgactggatttgacatggatctttgattc
agtgacatttaacagacaacacaaccaaaaacatctctgaaaattagtga
atgtgtggagatgtattggataagagatttatattctctattgacattac
tggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776691_142777220
seq2: B6Ng01-125P09.b_67_588 (reverse)

seq1  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCAT  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCAT  100

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  150

seq1  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250

seq1  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAA  300
      ||||||||||||||||||||||||||||||| | |||||||||||     
seq2  GGGGAAAAGCCTTGAAGATATGGGCACAGGGAAAAAATTCCTGAA-----  295

seq1  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  350
         |||||||||| |||||||||| |||||||| |||||| |||||||||
seq2  ---CAATGGCTTGAGCTGTAAGATTGAGAATTGGCAAATGAGACCTAATG  342

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  392

seq1  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACCACCAACAGATTGGGAAAGAATCTTTACCTATCCTAAATCAGATAGGG  442

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACTAATATCCGACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  492

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCA  530
      |||||||||||||||||||||||| |||||
seq2  TCAAATAACCCCATTAAAAAATGGTGCTCA  522

seq1: chr5_42615078_42616198
seq2: B6Ng01-125P09.g_68_1174 (reverse)

seq1  TGCTTCAGTAATTGTTCAAATAAGAATATATAATCTC-TATCC-ATACAT  48
      |||| |||||||   ||||   |||||||| |||||| ||||| ||||||
seq2  TGCTCCAGTAAT--GTCAATAGAGAATATA-AATCTCTTATCCAATACAT  47

seq1  CTCCACACATTCACTAATTTTCAGAGATTGTTTTTTGTTTGTTTGTTTGT  98
      ||||||||||||||||||||||||||| ||||||| |||   ||||    
seq2  CTCCACACATTCACTAATTTTCAGAGA-TGTTTTTGGTTGTGTTGT----  92

seq1  TCTTGTTAAATGTCACTGGATCAAAGATCCATGTCAAATCCAGTCACACT  148
         ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  --CTGTTAAATGTCACTGAATCAAAGATCCATGTCAAATCCAGTCACACT  140

seq1  TCTGTGCTTATTTCTTCATCACATTTTACCACTGTTTGTCTTAATTTATT  198
      ||||||||   |||||||||||||||   ||||| |||||||||||||||
seq2  TCTGTGCT--ATTCTTCATCACATTT--ACACTG-TTGTCTTAATTTATT  185

seq1  CGCACTGCTATAACTAAGTGCTATATCCCTAATGGCTTATAAACAGCACA  248
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGCACTGCTATAACTAAGTGCTATATCCCTAATGGC-TATAAACAGCACA  234

seq1  CATTGATTCTATGCAGCTCTAGGGACTGGAAAACCCCAAATAAAGATCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTCTATGCAGCTCTAGGGACTGGAAAACCCCAAATAAAGATCCT  284

seq1  CTTAAATTTAGTGTTTAAAGAGGGTCTGTTTTCTGGTTCATAGATGACTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATTTAGTGTTTAAAGAGGGTCTGTTTTCTGGTTCATAGATGACTT  334

seq1  TCTTCTTGTAGCATCACTGTAGTAGAAAAGAAAAGGAACTATCTTGTATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGTAGCATCACTGTAGTAGAAAAGAAAAGGAACTATCTTGTATC  384

seq1  TTTTGAAAAGAATTACATTTTCTACATAAGGATGGAATCAATTTTCACCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAAGAATTACATTTTCTACATAAGGATGGAATCAATTTTCACCC  434

seq1  TGTGCTGGCTAGGTTTATGTCAACTTAACACAAGTTAGGGTCATCATAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGGCTAGGTTTATGTCAACTTAACACAAGTTAGGGTCATCATAGA  484

seq1  GGAGGGATCCTCTGAGAAAATGTTTCCATAAGATTGAGCTATAGTCAAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGATCCTCTGAGAAAATGTTTCCATAAGATTGAGCTATAGTCAAGC  534

seq1  CTGGAGGACATTTTCTTAATGATTAATGTGGGAGGACCTAGTCCAGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGACATTTTCTTAATGATTAATGTGGGAGGACCTAGTCCAGTGTG  584

seq1  GGTGATGCCACCCTTGGACAGGTGGTCCTGAGCTCTATAACTTAGTAGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGCCACCCTTGGACAGGTGGTCCTGAGCTCTATAACTTAGTAGAC  634

seq1  TGAACAAGTGATGAGGAGCAAGCCAGTAAAGAATACCCCTCCATGGCTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAGTGATGAGGAGCAAGCCAGTAAAGAATACCCCTCCATGGCTTT  684

seq1  TACGTCAGCTTCTGTCTCCTGCTTTCTGCCCTGTTTGAGTTCCTGCCCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTCAGCTTCTGTCTCCTGCTTTCTGCCCTGTTTGAGTTCCTGCCCTG  734

seq1  ACTTCCTTCAGTGATCAACTATGATGTAGAAGTGTAAGCCAAAGAAACCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTCAGTGATCAACTATGATGTAGAAGTGTAAGCCAAAGAAACCC  784

seq1  TTTCCTTCCCAACTTGCTTTTAATTATGGTGTTTTCTTACAGTAATAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCCAACTTGCTTTTAATTATGGTGTTTTCTTACAGTAATAGAA  834

seq1  AACCAGGACACACCCCAATTCCATTTCAAAACACTACCATATTTAGTATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGACACACCCCAATTCCATTTCAAAACACTACCATATTTAGTATT  884

seq1  GTATGAATGAGGAGGGGACATACTTATAACGCTATTTAAAACTATCTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATGAGGAGGGGACATACTTATAACGCTATTTAAAACTATCTTTT  934

seq1  TATTTTTCATTATTTACTGCAATATCACAAATGTCTAGTTCAATGTCTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCATTATTTACTGCAATATCACAAATGTCTAGTTCAATGTCTAG  984

seq1  ATCAAAATGGAAACATAATATTTATTAGTTTTGGAGTAAATGAATGAGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATGGAAACATAATATTTATTAGTTTTGGAGTAAATGAATGAGTG  1034

seq1  AGTGAATGAATACATTCCCAAACACTGGAGGTAATAGGTAGAGGCAATGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGAATACATTCCCAAACACTGGAGGTAATAGGTAGAGGCAATGA  1084

seq1  TAATAGGGCCATTCACTGAATTC  1121
      |||||||||||||||||||||||
seq2  TAATAGGGCCATTCACTGAATTC  1107