BAC Information

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BAC

Clone NameB6Ng01-126J21
Chromosome2 (Build37)
Map Location 113,845,004 - 113,970,913
singlet/doubletdoublet
Overlap geneA530058N18Rik, Actc1, Aqr
Upstream geneRyr3, 4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9
Downstream geneZfp770, Atpbd4, LOC100043219, LOC100043222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126J21.bB6Ng01-126J21.g
ACCDH928940DH928941
length1,098891
definitionDH928940|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J21, 5' end.DH928941|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,845,004 - 113,846,119)(113,970,025 - 113,970,913)
sequence
gaattctccatcactgtgcttcgcccacactcaccccttactctcccacc
aaaggaaagtaatccaatgagggaacacacacagggtgttaataactgat
aaccacttaatgtattatccttctcaaaggaattatccttattcaagttg
caaaaccttcatccaaagaaatgaagatttttagggagcttttggaatac
tatgcttcaagaagtgaacagctatttgggagcaagggatatctaaacct
ttccaaatgatattgcacaaaaagtacttgcttcatttattgctctataa
agggcccaacttgtggaaatacgggaaccacacaaatgcaatgattctta
tatttactgcatcttaaaaccaccagggagctttgaaagctcacagtacc
taagctctactcagaccaataaaaatcagcgttcctggaagtgaaatcta
tgcattcgtattttcataaggaaaaatatttagcttattctggctccaat
atgcagtcgaagttaagctccactgtaataatgaacaccattaactgcag
agtagtggtagtcttaacaagcccagtgaagcgggctttctccccacgat
gggaatggctgctgctggacacaaagccagaatttcattctgaaaatgtg
ttcatgtggttctgtaagtacttaatataatccacacaggctaagtagtt
agttgctaaactgaaaacacccatctcatttcatcccagtccactcctgg
ccatctggtcctctgaatttccattacagggccatgtgtgtattaatgaa
atgattgcatccgattacatcttttattcagagcacaagaacggtccatg
aattctgtcctcgagcattactgtttttgtcgtgaagtcactaattaagt
ttactccgttcaggcagagtgggattgcagttcactaaggtaagaaagta
atcaaatatgttactgctgatataaaattataatttgctgcctagcaaca
caggtagacacttcaatcaaaatgtaactcatgtttctgttgtttctttg
ttaagacagagtttctttgtataatagactgctgtctgcactctcttt
gaattctaagcaattcttcagtcgtctttattttctaaactagctttttg
ttgtggttgtggttgggtgtggtgactttttactgttgttgctgtggctg
ttgtctgggttttggggtggggcttggcttaccctgtacatagcgcacca
ctgcacagtcgttcaaatcagggaatgaatgggcttctcatgcagtgggc
ttctcctgttgccaggagggagcacggagactcttcacctgcaccttgtg
gagctctcagaagacttcttggacctattaaattacgtgactgttaacta
ggtacattttattaatgtggaggtagacatagcacagtggtagagactgc
ttacttacacaatatagtgactactataccagcaccgcaggacgaaagaa
ttcaaggaattccataacttcttaaaaactctttagtattgtcttcattt
caccttgtttggacatgtagtccactgcgttgtgtcgggacacctccttt
tcatacaacattttctgaaacagatgactatttatgtcaaatatttagcc
atgtcactaacttatggctccttaagtgttgacagttttcacctttacag
ataacgcacgcgcacgagtgtgtgtgtgtgtgcgcgcgcgcgcgtgtgtg
tgcgtgtacacccatatgtgaacatttaaccagaaaccaggaactggtta
tttcaccatgtgtgcttattggctgctgggttaacctccaaaaccaacac
tctgattgagcctgcactgccttcgcaccagctctggttttgctcagtct
tcctgctttttccagcaaaacaaacaaaacataacaaaaggatttaaagt
gttagttttctgttataagattaagtagctttcatcctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_113845004_113846119
seq2: B6Ng01-126J21.b_48_1145

seq1  GAATTCTCCATCACTGTGCTTCGCCCACACTCACCCCTTACTCTCCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCACTGTGCTTCGCCCACACTCACCCCTTACTCTCCCACC  50

seq1  AAAGGAAAGTAATCCAATGAGGGAACACACACAGGGTGTTAATAACTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGTAATCCAATGAGGGAACACACACAGGGTGTTAATAACTGAT  100

seq1  AACCACTTAATGTATTATCCTTCTCAAAGGAATTATCCTTATTCAAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTAATGTATTATCCTTCTCAAAGGAATTATCCTTATTCAAGTTG  150

seq1  CAAAACCTTCATCCAAAGAAATGAAGATTTTTAGGGAGCTTTTGGAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTTCATCCAAAGAAATGAAGATTTTTAGGGAGCTTTTGGAATAC  200

seq1  TATGCTTCAAGAAGTGAACAGCTATTTGGGAGCAAGGGATATCTAAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCAAGAAGTGAACAGCTATTTGGGAGCAAGGGATATCTAAACCT  250

seq1  TTCCAAATGATATTGCACAAAAAGTACTTGCTTCATTTATTGCTCTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATGATATTGCACAAAAAGTACTTGCTTCATTTATTGCTCTATAA  300

seq1  AGGGCCCAACTTGTGGAAATACGGGAACCACACAAATGCAATGATTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCAACTTGTGGAAATACGGGAACCACACAAATGCAATGATTCTTA  350

seq1  TATTTACTGCATCTTAAAACCACCAGGGAGCTTTGAAAGCTCACAGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTGCATCTTAAAACCACCAGGGAGCTTTGAAAGCTCACAGTACC  400

seq1  TAAGCTCTACTCAGACCAATAAAAATCAGCGTTCCTGGAAGTGAAATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTACTCAGACCAATAAAAATCAGCGTTCCTGGAAGTGAAATCTA  450

seq1  TGCATTCGTATTTTCATAAGGAAAAATATTTAGCTTATTCTGGCTCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCGTATTTTCATAAGGAAAAATATTTAGCTTATTCTGGCTCCAAT  500

seq1  ATGCAGTCGAAGTTAAGCTCCACTGTAATAATGAACACCATTAACTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCGAAGTTAAGCTCCACTGTAATAATGAACACCATTAACTGCAG  550

seq1  AGTAGTGGTAGTCTTAACAAGCCCAGTGAAGCGGGCTTTCTCCCCACGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGGTAGTCTTAACAAGCCCAGTGAAGCGGGCTTTCTCCCCACGAT  600

seq1  GGGAATGGCTGCTGCTGGACACAAAGCCAGAATTTCATTCTGAAAATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGCTGCTGCTGGACACAAAGCCAGAATTTCATTCTGAAAATGTG  650

seq1  TTCATGTGGTTCTGTAAGTACTTAATATAATCCACACAGGCTAAGTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGGTTCTGTAAGTACTTAATATAATCCACACAGGCTAAGTAGTT  700

seq1  AGTTGCTAAACTGAAAACACCCATCTCATTTCATCCCAGTCCACTCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTAAACTGAAAACACCCATCTCATTTCATCCCAGTCCACTCCTGG  750

seq1  CCATCTGGTCCTCTGAATTTCCATTACAGGGCCATGTGTGTATTAATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGGTCCTCTGAATTTCCATTACAGGGCCATGTGTGTATTAATGAA  800

seq1  ATGATTGCATCCGATTACATCTTTTATTCAGAGCACAAGAACGGTCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGCATCCGATTACATCTTTTATTCAGAGCACAAGAACGGTCCATG  850

seq1  AATTCTGTCCTCGAGCATTACTGTTTTTGTCGTGAAGTCACTAATTAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTCCTCGAGCATTACTGTTTTTGTCGTGAAGTCACTAATTAAGT  900

seq1  TTACTCCGTTTCAGGCAGAGGTGGGATTGCAGTTCACTAAGGTAAGAAAG  950
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  TTACTCCG-TTCAGGCAGA-GTGGGATTGCAGTTCACTAAGGTAAGAAAG  948

seq1  TAAATCAAATATGTTACTGCTGATAATAAAATTATAATTTTGCTGCCTAG  1000
      | |||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  T-AATCAAATATGTTACTGCTGAT-ATAAAATTATAA-TTTGCTGCCTAG  995

seq1  CAACCACAGGGTAGACACTTCAATCAAAAATGTTACCTCATTGTTTTCTG  1050
      ||| |||| |||||||||||||||| |||||| || |||||   ||||||
seq2  CAA-CACA-GGTAGACACTTCAATC-AAAATG-TAACTCAT--GTTTCTG  1039

seq1  TTTGTTTCCTTTGTTTAAGACAGAGTTTCTCTGTATAATAGACTTGGCTG  1100
       |||||| ||||| |||||||||||||||| |||||||||||||  ||||
seq2  -TTGTTT-CTTTG-TTAAGACAGAGTTTCTTTGTATAATAGACT--GCTG  1084

seq1  TCCTGGCACTCTCTTT  1116
      ||   |||||||||||
seq2  TC--TGCACTCTCTTT  1098

seq1: chr2_113970025_113970913
seq2: B6Ng01-126J21.g_65_955 (reverse)

seq1  AATA-GATGAAAAGCTACTTAATCTTATAACAGAAAAACTAACACTTTAA  49
      |||| |||| ||||||||||||||||||||||| ||||||||||||||||
seq2  AATAGGATG-AAAGCTACTTAATCTTATAACAG-AAAACTAACACTTTAA  48

seq1  ATCCTTTTGTTTTGTTTTGTTTTGTTTTGCTGG-AAAAGCAGGAAGACTG  98
      ||||||||||| ||||||| ||||||||||||| ||||||||||||||||
seq2  ATCCTTTTGTTATGTTTTG-TTTGTTTTGCTGGAAAAAGCAGGAAGACTG  97

seq1  AGCAAAACCAAGGCTGGTGCGAAGGCAGTGCAGGCTC-ATCAGAGTGTTG  147
      ||||||||||  ||||||||||||||||||||||||| ||||||||||||
seq2  AGCAAAACCAGAGCTGGTGCGAAGGCAGTGCAGGCTCAATCAGAGTGTTG  147

seq1  GTTTTGGAGGTTAACCCAGCAGCC-ATAAGCACACATGGTGAAATAACCA  196
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTTTGGAGGTTAACCCAGCAGCCAATAAGCACACATGGTGAAATAACCA  197

seq1  GTTCCTGG-TTCTGGTTAAATGTTCACATATGGGTGTACACGCACACACA  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGTTTCTGGTTAAATGTTCACATATGGGTGTACACGCACACACA  247

seq1  CGCGCGCGCGCGCACACACACACACACTCGTGCGCGTGCGTTATCTGTAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCGCGCGCGCACACACACACACACTCGTGCGCGTGCGTTATCTGTAA  297

seq1  AGGTGAAAACTGTCAACACTTAAGGAGCCATAAGTTAGTGACATGGCTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAACTGTCAACACTTAAGGAGCCATAAGTTAGTGACATGGCTAA  347

seq1  ATATTTGACATAAATAGTCATCTGTTTCAGAAAATGTTGTATGAAAAGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGACATAAATAGTCATCTGTTTCAGAAAATGTTGTATGAAAAGGA  397

seq1  GGTGTCCCGACACAACGCAGTGGACTACATGTCCAAACAAGGTGAAATGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCCGACACAACGCAGTGGACTACATGTCCAAACAAGGTGAAATGA  447

seq1  AGACAATACTAAAGAGTTTTTAAGAAGTTATGGAATTCCTTGAATTCTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATACTAAAGAGTTTTTAAGAAGTTATGGAATTCCTTGAATTCTTT  497

seq1  CGTCCTGCGGTGCTGGTATAGTAGTCACTATATTGTGTAAGTAAGCAGTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGCGGTGCTGGTATAGTAGTCACTATATTGTGTAAGTAAGCAGTC  547

seq1  TCTACCACTGTGCTATGTCTACCTCCACATTAATAAAATGTACCTAGTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACTGTGCTATGTCTACCTCCACATTAATAAAATGTACCTAGTTA  597

seq1  ACAGTCACGTAATTTAATAGGTCCAAGAAGTCTTCTGAGAGCTCCACAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACGTAATTTAATAGGTCCAAGAAGTCTTCTGAGAGCTCCACAAG  647

seq1  GTGCAGGTGAAGAGTCTCCGTGCTCCCTCCTGGCAACAGGAGAAGCCCAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTGAAGAGTCTCCGTGCTCCCTCCTGGCAACAGGAGAAGCCCAC  697

seq1  TGCATGAGAAGCCCATTCATTCCCTGATTTGAACGACTGTGCAGTGGTGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAGAAGCCCATTCATTCCCTGATTTGAACGACTGTGCAGTGGTGC  747

seq1  GCTATGTACAGGGTAAGCCAAGCCCCACCCCAAAACCCAGACAACAGCCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTACAGGGTAAGCCAAGCCCCACCCCAAAACCCAGACAACAGCCA  797

seq1  CAGCAACAACAGTAAAAAGTCACCACACCCAACCACAACCACAACAAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAACAGTAAAAAGTCACCACACCCAACCACAACCACAACAAAAA  847

seq1  GCTAGTTTAGAAAATAAAGACGACTGAAGAATTGCTTAGAATTC  889
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTAGAAAATAAAGACGACTGAAGAATTGCTTAGAATTC  891