This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
Search Parameter
BAC name
Region
Chromosome
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search by nearby gene name.
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Search Result
BAC
Clone Name
B6Ng01-126M12
Chromosome
2 (Build37)
Map Location
43,100,109 - 43,101,210
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Lrp1b
,
LOC100041228
Downstream gene
LOC100041245
,
Kynu
,
Arhgap15
Link
Open Mouse BAC browser
Click to get alignment info.
name
Lrp1b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:94217
MGI:2151136
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100041228
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100041228
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
name
LOC100041245
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100041245
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 mRNAs, 2270 ESTs, 22 Proteins
name
Kynu
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:70789
MGI:1918039
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Arhgap15
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:76117
MGI:1923367
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Lrp1b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:16519538
GeneID:94217
MGI:2151136
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: low density lipoprotein-related protein 1B (deleted in tumors)
transcript_id
: NM_053011.1
name
LOC100041228
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149249269
GeneID:100041228
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
product
: similar to TTF-I interacting peptide 20; TIP20; Transcription Termination Factor I Interacting Peptide 20
transcript_id
: XM_001476004.1
name
LOC100041245
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149249271
GeneID:100041245
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 mRNAs, 2270 ESTs, 22 Proteins
product
: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
transcript_id
: XM_001476037.1
name
Kynu
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:27229112
GeneID:70789
MGI:1918039
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: kynureninase (L-kynurenine hydrolase)
transcript_id
: NM_027552.1
name
Arhgap15
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:90962990
GeneID:76117
MGI:1923367
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Rho GTPase activating protein 15
transcript_id
: NM_153820.3
name
Arhgap15
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:70780376
GeneID:76117
MGI:1923367
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Rho GTPase activating protein 15
transcript_id
: NM_001025377.1
name
Lrp1b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:16519539
GeneID:94217
MGI:2151136
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005041 - low-density lipoprotein receptor activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0006897 - endocytosis [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: low density lipoprotein receptor related protein LRP1B/LRP-DIT
product
: low density lipoprotein-related protein 1B
protein_id
: NP_443737.1
name
LOC100041228
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149249270
GeneID:100041228
definition
codon_start
: 1
product
: similar to TTF-I interacting peptide 20; TIP20; Transcription Termination Factor I Interacting Peptide 20
protein_id
: XP_001476054.1
name
LOC100041245
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149249272
GeneID:100041245
definition
codon_start
: 1
product
: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
protein_id
: XP_001476087.1
name
Kynu
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27229113
CCDS:CCDS16018.1
GeneID:70789
MGI:1918039
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IEA]
GO_function
: GO:0030429 - kynureninase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
GO_process
: GO:0008152 - metabolism [Evidence IEA]; GO:0009435 - NAD biosynthesis [Evidence IEA]; GO:0019363 - pyridine nucleotide biosynthesis [Evidence IEA]; GO:0006569 - tryptophan catabolism [Evidence IEA]
codon_start
: 1
product
: kynureninase (L-kynurenine hydrolase)
protein_id
: NP_081828.1
name
Arhgap15
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:70780375
CCDS:CCDS16019.1
GeneID:76117
MGI:1923367
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0030675 - Rac GTPase activator activity [Evidence ISS]
GO_process
: GO:0008360 - regulation of cell shape [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1
product
: Rho GTPase activating protein 15 isoform 1
protein_id
: NP_722542.2
name
Arhgap15
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:70780377
GeneID:76117
MGI:1923367
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0030675 - Rac GTPase activator activity [Evidence ISS]
GO_process
: GO:0008360 - regulation of cell shape [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2
product
: Rho GTPase activating protein 15 isoform 2
protein_id
: NP_001020548.1
clone name
MSMg01-533G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526P14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-110P10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-276J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-332O01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-342L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-311E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-435M14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-093C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-277K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-084K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-457J15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-106G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-398A14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402A11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-120I03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-120I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-308G06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-534M22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-092O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-095G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-108O03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-331E10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-529P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378D09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-159P03
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-059F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390D17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-231C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-503L05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506G04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-119K24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-179H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-165A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-402L09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-140O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-115E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236C12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-390J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-425O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-195F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-361C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-436K01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-411F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379N13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-525P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-485L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280M11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-470L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-173M24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339H23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481N18
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-459C24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-367F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-386D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501G05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-451E05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-421E12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-541P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-474P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535B24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378E01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-405K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-337F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-064B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-197L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-362E06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302A12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-478G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516G12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-076B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-343A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-413E18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-203G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-481E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-383O01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-274P08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141H22
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-518M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-067A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-437J08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423I06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-320J04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-146I23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-347P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426I13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-097F08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-252F05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-170D19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-295A11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-132M03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240B11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-063M24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-081P23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-273G11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-108E06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-343F17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-203F19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-238A07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-123H23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-349H24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-295G16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-235E08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-070G01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-101O02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-060M11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-139L01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-151D18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-101N02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-350B07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-018A13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-014D04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-031H24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-267K15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-049C08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-071A07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-047I17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-160J07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-142J02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-144I16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-123I14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-026M12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-251P04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-285I16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-311N09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-003G01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-068N07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-057C05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-003C24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-104D09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-296G09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-137C15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-092D01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-296N15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-058D11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-170K14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-332I04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259D20
singlet/doublet
singlet
plural/unique
unique
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doublet
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doublet
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doublet
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