BAC Information

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BAC

Clone NameB6Ng01-126N11
Chromosome18 (Build37)2 (Build37)
Map Location 45,866,422 - 45,867,575100,610,517 - 100,611,071
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneYthdc2, LOC626309, LOC225457, LOC100042900, Kcnn2
Downstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126N11.bB6Ng01-126N11.g
ACCDH929108DH929109
length1,140991
definitionDH929108|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N11, 5' end.DH929109|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,866,422 - 45,867,575)(100,610,517 - 100,611,071)
sequence
gaattctggatagtctgtaaaagctctcctgaccatagggactagcactt
ttgaagtaaataagaaatggaaacctatatgttctccgactcccttgagt
cacttagtaggagttcttgagttgtaagctataaaatttggcaattacct
ccaaactccagatagtgatctgtgggctctgatccttcactcttctctga
cctaagaacagctatgatatggtgagctaattttacacatcgtcctactt
tctggaagtttttcttctagatgctctgttgttgctctctataatttagt
ttctccatggcccatctaaccactatgattggcacgtttgtctaggtcaa
cccaagcgtacatgctacctaagttcctttcaccattagctcactcctcc
agtgagtcaaccaatggtgagatgcagatattggctagagaaatgtatcc
ctgacatatctaagtatctattaaagaccaaaggggactctgctaatgtt
ctctagggatttccatgaatttgtaccaaatatttgccttttgtaggtat
cataatatttcttgctttcatttatgataaaggaaagagattaataagag
gtcagaaaatggagttggtctctcattgcggaactctcatgagtgtggtc
cccaaaccttaaattggtagccttggaagatagaactagataccacagaa
ctatagtatctaagacctaagagactaaactttgagtaaccaggactact
tttatttgaatgaccctgatttgcatggcagaaactttcctaactagaaa
ttacctacgtgatgattcaggcttacttcctaaaactacatacccatcat
tcgggactgtccttccaatgcatgctgcagattgccttccagaaacatca
cacacgacagcttaaaggtattttctcttaaagggtgctgtccatttcaa
tactctatgattcagggcatgttctagtaccattcagcagctgctactga
cagcaagcagcacactgagaccattcttcctattgtggcctaatattgaa
tttatttataggctgcattttctcattctgctcagtgctgacttccagtc
tactacaattacaggcgactgaccacattctattaactat
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttccatg
cagttttttttaatcacaattgctctgtactacagctttaggtcaggcat
ggtgattccaccagaggttcttttattgttgagaagagtttttgctatcc
taggtttttttgttattctagatgaatttgcatattgctctttctaattc
gttgaagaattgagttggaattttaatggggattgcattgaatctctaga
ttgcttttggcaagatagccattttcacaatgttgatcctgccaatccat
gagcatgggagatctttccatattctgagatcttctttaatttctttctt
cagagacttgaagttcttatcatacagatctttcacttccttagttagag
tcatgccaagatattttatattatttgtgactattgagaagggtgttgtt
tccctaatttctttctcagcctgtttattctttgtgtagagaaaagtcat
tgatttgtttgaggtaatattatatccagctacttcaccaaagctgttta
tcaggtttaggagttctctggtggaatttttagggtcactttatgtatag
tatcatatcatccacaaaaagtgatattttgactttcatcttttccaatt
tgtatccccttgatctccttttgttgtcgaattgctctggctaggacttc
aagtactatgtgagaggtagggagaaggtgggaagccttgtctagttcct
ggattttagtggattgcttcagcttcctcacccatttactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45866422_45867575
seq2: B6Ng01-126N11.b_50_1189

seq1  GAATTCTGGATAGTCTGTAAAAGCTCTCCTGACCATAGGGACTAGCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATAGTCTGTAAAAGCTCTCCTGACCATAGGGACTAGCACTT  50

seq1  TTGAAGTAAATAAGAAATGGAAACCTATATGTTCTCCGACTCCCTTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTAAATAAGAAATGGAAACCTATATGTTCTCCGACTCCCTTGAGT  100

seq1  CACTTAGTAGGAGTTCTTGAGTTGTAAGCTATAAAATTTGGCAATTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGTAGGAGTTCTTGAGTTGTAAGCTATAAAATTTGGCAATTACCT  150

seq1  CCAAACTCCAGATAGTGATCTGTGGGCTCTGATCCTTCACTCTTCTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTCCAGATAGTGATCTGTGGGCTCTGATCCTTCACTCTTCTCTGA  200

seq1  CCTAAGAACAGCTATGATATGGTGAGCTAATTTTACACATCGTCCTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAACAGCTATGATATGGTGAGCTAATTTTACACATCGTCCTACTT  250

seq1  TCTGGAAGTTTTTCTTCTAGATGCTCTGTTGTTGCTCTCTATAATTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGTTTTTCTTCTAGATGCTCTGTTGTTGCTCTCTATAATTTAGT  300

seq1  TTCTCCATGGCCCATCTAACCACTATGATTGGCACGTTTGTCTAGGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATGGCCCATCTAACCACTATGATTGGCACGTTTGTCTAGGTCAA  350

seq1  CCCAAGCGTACATGCTACCTAAGTTCCTTTCACCATTAGCTCACTCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCGTACATGCTACCTAAGTTCCTTTCACCATTAGCTCACTCCTCC  400

seq1  AGTGAGTCAACCAATGGTGAGATGCAGATATTGGCTAGAGAAATGTATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCAACCAATGGTGAGATGCAGATATTGGCTAGAGAAATGTATCC  450

seq1  CTGACATATCTAAGTATCTATTAAAGACCAAAGGGGACTCTGCTAATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATATCTAAGTATCTATTAAAGACCAAAGGGGACTCTGCTAATGTT  500

seq1  CTCTAGGGATTTCCATGAATTTGTACCAAATATTTGCCTTTTGTAGGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGATTTCCATGAATTTGTACCAAATATTTGCCTTTTGTAGGTAT  550

seq1  CATAATATTTCTTGCTTTCATTTATGATAAAGGAAAGAGATTAATAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTTCTTGCTTTCATTTATGATAAAGGAAAGAGATTAATAAGAG  600

seq1  GTCAGAAAATGGAGTTGGTCTCTCATTGCGGAACTCTCATGAGTGTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAATGGAGTTGGTCTCTCATTGCGGAACTCTCATGAGTGTGGTC  650

seq1  CCCAAACCTTAAATTGGTAGCCTTGGAAGATAGAACTAGATACCACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCTTAAATTGGTAGCCTTGGAAGATAGAACTAGATACCACAGAA  700

seq1  CTATAGTATCTAAGACCTAAGAGACTAAACTTTGAGTAACCAGGACTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTATCTAAGACCTAAGAGACTAAACTTTGAGTAACCAGGACTACT  750

seq1  TTTATTTGAATGACCCTGATTTGCATGGCAGAAACTTTCCTAACTAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGAATGACCCTGATTTGCATGGCAGAAACTTTCCTAACTAGAAA  800

seq1  TTACCTACGTGATGATTCAGGCTTACTTCCTAAAACTACATACCCATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTACGTGATGATTCAGGCTTACTTCCTAAAACTACATACCCATCAT  850

seq1  TCGGGACTGTCC-TCCAATGCATGCTGCAGATTGCCTTCCAGAAACATCA  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCGGGACTGTCCTTCCAATGCATGCTGCAGATTGCCTTCCAGAAACATCA  900

seq1  CACACGACAGCCTTAAAGGTA-TTTCTCTTAAAGGGTGCTGTCCACTTCA  948
      |||||||||| |||||||||| ||||||||||||||||||||||| ||||
seq2  CACACGACAG-CTTAAAGGTATTTTCTCTTAAAGGGTGCTGTCCATTTCA  949

seq1  ATACTCTATGATTCAGGGCATGTTCTAGTACCATTCAGCCAGCTGCCTAC  998
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  ATACTCTATGATTCAGGGCATGTTCTAGTACCATTCAG-CAGCTG-CTAC  997

seq1  TGACAAGCAAGCAGCACACTTGAGACCCATTCTTCCTATTGTGGCCTAAA  1048
      |||| |||||||||||||| ||||| ||||||||||||||||||||| ||
seq2  TGAC-AGCAAGCAGCACAC-TGAGA-CCATTCTTCCTATTGTGGCCT-AA  1043

seq1  TATTGAATTTATTTATAGCCTGCCATTTTCTTCCATTCTGCCTCAGTGGC  1098
      |||||||||||||||||| ||| ||||||||  ||||||| |||||| ||
seq2  TATTGAATTTATTTATAGGCTG-CATTTTCT--CATTCTG-CTCAGT-GC  1088

seq1  TGACCTTCCCAGTCTACTACAATTTACA-GCGACTGACCACCATTCTATT  1147
      ||||  | |||||||||||||| ||||| ||||||||||| |||||||||
seq2  TGAC--TTCCAGTCTACTACAA-TTACAGGCGACTGACCA-CATTCTATT  1134

seq1  AAACTAT  1154
       ||||||
seq2  -AACTAT  1140

seq1: chr2_100610517_100611071
seq2: B6Ng01-126N11.g_504_1059 (reverse)

seq1  AAGTAAAT-GGAGA-GAAGCTGGAAGCAATCCCACTAAAAT-CAGGGACT  47
      |||||||| || || |||||| |||||||| |||||||||| |||| |||
seq2  AAGTAAATGGGTGAGGAAGCT-GAAGCAAT-CCACTAAAATCCAGGAACT  48

seq1  AGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGT  97
      |||||||||| ||||| |||||||||||| |   ||||||||||||||||
seq2  AGACAAGGCTTCCCACCTTCTCCCTACCTCT--CACATAGTACTTGAAGT  96

seq1  ATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTG  147
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTG  146

seq1  GAAAAGA-GGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATA  196
      ||||||| | |||||||||||||||||||||  |||||||||||| ||||
seq2  GAAAAGATGAAAGTCAAAATATCACTTTTTGTGGATGATATGATACTATA  196

seq1  TAT-AAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAAC  245
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAAC  246

seq1  AGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGC  295
      |||||||||||||||||||||||||| |||| ||||||||| |||||| |
seq2  AGCTTTGGTGAAGTAGCTGGATATAATATTACCTCAAACAAATCAATGAC  296

seq1  CTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAA  345
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAA  346

seq1  CACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTA  395
      |||| |||||||||||||||||||||||||||||||| ||| ||||||||
seq2  CACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCATGACTCTA  396

seq1  ACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAA  445
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  ACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGAA  446

seq1  AGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGA  495
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAAATTAAAGAAGATCTCAGAATATGGAAAGATCTCCCATGCTCATGGA  496

seq1  TTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC  545
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TTGGCAGGATCAACATTGTGAAAATGGCTATCTTGCCAAAAGCAATCTAG  546

seq1  AGATTCAATG  555
      ||||||||||
seq2  AGATTCAATG  556