BAC Information

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BAC

Clone NameB6Ng01-126O21
Chromosome2 (Build37)
Map Location 130,345,236 - 130,513,794
singlet/doubletdoublet
Overlap genePtpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11
Upstream geneF830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16
Downstream gene4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126O21.bB6Ng01-126O21.g
ACCDH929176DH929177
length1,095997
definitionDH929176|Mus musculus domesticus DNA, BAC clone: B6Ng01-126O21, 5' end.DH929177|Mus musculus domesticus DNA, BAC clone: B6Ng01-126O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,512,681 - 130,513,794)(130,345,236 - 130,346,227)
sequence
gaattcaaggaggctctggtgcatcagagacagctgctcaccatgatgat
gccaagagccgcagggcacagcatgagctccctccatactcacagacacc
ctcaggtacaggagagaggcagtgtggtgggagcggcatgggccaaccag
ggctaactcggtctatcttttctcccagcccccgaaatgcaaggactttt
tcccttttggaaagggcatctggatggatatcatgcgcaggtttcctgtg
tacccaatggacttcactgatggtgtgtgcccagccagagcttagccttt
caggccaccaggccatgtgtatgtgcctgccgtgcatccctggcaaatgc
tgtctgtcttgcattcctaggcatcattgggaaaagcaagagcgtgggca
aatatgtcaccaccacactcttcctctacttcgcctgcctcctaccgacc
attgcttttggatccctcaacgatgagaacacaaacggggccatcggtaa
ggggctgggggtggtagggatgtgccaggtaggactctgggcagtgatga
cctctgaccttaccacctctgcagatgtgcagaagaccatagctggacag
agcatcggaggcctcttgtatgcactgttctctgggcagcccctggtgat
actgttgacaaccgcacccctggccatctacacccagggtacagtggggt
tgaaatgggaaatggtcccagaccccacctcagccctgactgtccatcct
gccctgcttgtatacagtgattcgagtcatctgtgatgactacaatctgg
acttcaacgccttctatgcatggacgggcctgtggaacagtttcttcctt
gcactttatgccttcctcaacctcagcctgcttatgaatctctttaagag
gtgattggtcctgggctacagagtccagagatgtgggtctgtctcatgtc
aagccctataccccaggtagtgtgtctccaggaggcggagtgggcttttt
agagtgtccaatgagcattcttcttggggatggcctattagagttcagga
accactaataccatacccacataactctttgcaggctacaaggaa
gaattcaacgtgagttctttgttgttagcagaggaagggagacctaaggt
ccagccttctgagtcatgggatataacataggtttctaatgataatgggt
gaggaatatttcaccgcgttcatcttgctcctttcctgtgtagaaagaaa
gttttttaaaaaaaggaaagtgcttcaccctcctcaccttcccatccact
catcactggccagttcattcattgtcctgcctagtgactcatctgttcaa
tacttacaagcatttataggaaccaagtaatattctcagtgccaaggata
tgtatgttacagagcaaaaacaaatcccactcccaacctcaaataactct
ctacccacttgggaaactctacttacaagaacaaaactacctagaaatgg
ctgggcggggtggcgcacacctttaatcccagcactcaggaggcagaggc
aggcggatttctgagtttgaggccagcctggtctacaaagtgagttccag
gacagccagggctacacagagaaaccctgtctcgaaaaacaaaaaacaaa
caaacaaaaaaaaacctacctagaaagccaaacagcaattcaagatgttg
tctatagcagggatctggagtgtatagagtaagtattaggaatagtttga
tgtaaaaagtagaggcttcgagagaaaggctgaatattaagatttgtgtt
tttcatgcctctcaaggaagcaggatgagtataaaccagcagctgctaat
cctgagtcaaaagcttccttgctatgatgtagctccactgagagctttac
ttacctagagtgtcacaggttcctgggttcattcctcagtactaaagaaa
aggatgggagagactttagccaagtctagtttgcatccatgtcaatccaa
ctagagaggctgagcaaggcggatcacagtacaagccagcctgagcactt
ataatagcttactgtcctcaatgaaatatgtagctaggattttgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_130512681_130513794
seq2: B6Ng01-126O21.b_49_1143 (reverse)

seq1  TTCCTCTGTAGACCTGCAAAGAGGTTAATGTGTGTATGGGTAATTAGTGG  50
      ||||| ||||| |||||||||||  | ||||| ||||||   ||||||||
seq2  TTCCT-TGTAG-CCTGCAAAGAG--TTATGTGGGTATGG--TATTAGTGG  44

seq1  GTTCCCTGAACTCCTATATAGCCCATCCCCATGAAAGAATGCTCAATGGG  100
        | |||||||| ||| |||| ||||||||| | ||||||||||| ||| 
seq2  --TTCCTGAACT-CTA-ATAGGCCATCCCCAAG-AAGAATGCTCATTGG-  88

seq1  ACCACTCCTAAAAAGCCCACCTCCGCCTCTTGGAGAACACACTACCCTGG  150
        |||| |||||||||||| ||||||||| ||||| |||||||| |||||
seq2  -ACACT-CTAAAAAGCCCA-CTCCGCCTCCTGGAG-ACACACTA-CCTGG  133

seq1  GGTTATAGGGCTTTGACATGAGACAGACCCACATCTCTGGACTCTGTAGC  200
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GG-TATAGGGC-TTGACATGAGACAGACCCACATCTCTGGACTCTGTAGC  181

seq1  CCAGGACCAATCACCTCTTAAAGAGATTCATAAGCAGGCTGAGGTTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACCAATCACCTCTTAAAGAGATTCATAAGCAGGCTGAGGTTGAGG  231

seq1  AAGGCATAAAGTGCAAGGAAGAAACTGTTCCACAGGCCCGTCCATGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATAAAGTGCAAGGAAGAAACTGTTCCACAGGCCCGTCCATGCATA  281

seq1  GAAGGCGTTGAAGTCCAGATTGTAGTCATCACAGATGACTCGAATCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCGTTGAAGTCCAGATTGTAGTCATCACAGATGACTCGAATCACTG  331

seq1  TATACAAGCAGGGCAGGATGGACAGTCAGGGCTGAGGTGGGGTCTGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAGCAGGGCAGGATGGACAGTCAGGGCTGAGGTGGGGTCTGGGAC  381

seq1  CATTTCCCATTTCAACCCCACTGTACCCTGGGTGTAGATGGCCAGGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCATTTCAACCCCACTGTACCCTGGGTGTAGATGGCCAGGGGTG  431

seq1  CGGTTGTCAACAGTATCACCAGGGGCTGCCCAGAGAACAGTGCATACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGTCAACAGTATCACCAGGGGCTGCCCAGAGAACAGTGCATACAAG  481

seq1  AGGCCTCCGATGCTCTGTCCAGCTATGGTCTTCTGCACATCTGCAGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCGATGCTCTGTCCAGCTATGGTCTTCTGCACATCTGCAGAGGT  531

seq1  GGTAAGGTCAGAGGTCATCACTGCCCAGAGTCCTACCTGGCACATCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGTCAGAGGTCATCACTGCCCAGAGTCCTACCTGGCACATCCCTA  581

seq1  CCACCCCCAGCCCCTTACCGATGGCCCCGTTTGTGTTCTCATCGTTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCAGCCCCTTACCGATGGCCCCGTTTGTGTTCTCATCGTTGAGG  631

seq1  GATCCAAAAGCAATGGTCGGTAGGAGGCAGGCGAAGTAGAGGAAGAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAAAGCAATGGTCGGTAGGAGGCAGGCGAAGTAGAGGAAGAGTGT  681

seq1  GGTGGTGACATATTTGCCCACGCTCTTGCTTTTCCCAATGATGCCTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGACATATTTGCCCACGCTCTTGCTTTTCCCAATGATGCCTAGGA  731

seq1  ATGCAAGACAGACAGCATTTGCCAGGGATGCACGGCAGGCACATACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGACAGACAGCATTTGCCAGGGATGCACGGCAGGCACATACACAT  781

seq1  GGCCTGGTGGCCTGAAAGGCTAAGCTCTGGCTGGGCACACACCATCAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGTGGCCTGAAAGGCTAAGCTCTGGCTGGGCACACACCATCAGTG  831

seq1  AAGTCCATTGGGTACACAGGAAACCTGCGCATGATATCCATCCAGATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATTGGGTACACAGGAAACCTGCGCATGATATCCATCCAGATGCC  881

seq1  CTTTCCAAAAGGGAAAAAGTCCTTGCATTTCGGGGGCTGGGAGAAAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAAAGGGAAAAAGTCCTTGCATTTCGGGGGCTGGGAGAAAAGAT  931

seq1  AGACCGAGTTAGCCCTGGTTGGCCCATGCCGCTCCCACCACACTGCCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGAGTTAGCCCTGGTTGGCCCATGCCGCTCCCACCACACTGCCTCT  981

seq1  CTCCTGTACCTGAGGGTGTCTGTGAGTATGGAGGGAGCTCATGCTGTGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTACCTGAGGGTGTCTGTGAGTATGGAGGGAGCTCATGCTGTGCC  1031

seq1  CTGCGGCTCTTGGCATCATCATGGTGAGCAGCTGTCTCTGATGCACCAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGCTCTTGGCATCATCATGGTGAGCAGCTGTCTCTGATGCACCAGA  1081

seq1  GCCTCCTTGAATTC  1114
      ||||||||||||||
seq2  GCCTCCTTGAATTC  1095

seq1: chr2_130345236_130346227
seq2: B6Ng01-126O21.g_66_1062

seq1  GAATTCAACGTGAGTTCTTTGTTGTTAGCAGAGGAAGGGAGACCTAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGTGAGTTCTTTGTTGTTAGCAGAGGAAGGGAGACCTAAGGT  50

seq1  CCAGCCTTCTGAGTCATGGGATATAACATAGGTTTCTAATGATAATGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTCTGAGTCATGGGATATAACATAGGTTTCTAATGATAATGGGT  100

seq1  GAGGAATATTTCACCGCGTTCATCTTGCTCCTTTCCTGTGTAGAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATATTTCACCGCGTTCATCTTGCTCCTTTCCTGTGTAGAAAGAAA  150

seq1  GTTTTTTAAAAAAAGGAAAGTGCTTCACCCTCCTCACCTTCCCATCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAAAAAAAGGAAAGTGCTTCACCCTCCTCACCTTCCCATCCACT  200

seq1  CATCACTGGCCAGTTCATTCATTGTCCTGCCTAGTGACTCATCTGTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGGCCAGTTCATTCATTGTCCTGCCTAGTGACTCATCTGTTCAA  250

seq1  TACTTACAAGCATTTATAGGAACCAAGTAATATTCTCAGTGCCAAGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACAAGCATTTATAGGAACCAAGTAATATTCTCAGTGCCAAGGATA  300

seq1  TGTATGTTACAGAGCAAAAACAAATCCCACTCCCAACCTCAAATAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTACAGAGCAAAAACAAATCCCACTCCCAACCTCAAATAACTCT  350

seq1  CTACCCACTTGGGAAACTCTACTTACAAGAACAAAACTACCTAGAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACTTGGGAAACTCTACTTACAAGAACAAAACTACCTAGAAATGG  400

seq1  CTGGGCGGGGTGGCGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCGGGGTGGCGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGC  450

seq1  AGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG  500

seq1  GACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAAACAAA  550

seq1  CAAACAAAAAAAAACCTACCTAGAAAGCCAAACAGCAATTCAAGATGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAAAAACCTACCTAGAAAGCCAAACAGCAATTCAAGATGTTG  600

seq1  TCTATAGCAGGGATCTGGAGTGTATAGAGTAAGTATTAGGAATAGTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCAGGGATCTGGAGTGTATAGAGTAAGTATTAGGAATAGTTTGA  650

seq1  TGTAAAAAGTAGAGGCTTCGAGAG-AAGGCTGAATATTAAGATTTGTGTT  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTAAAAAGTAGAGGCTTCGAGAGAAAGGCTGAATATTAAGATTTGTGTT  700

seq1  TTTCATGCCTCTCAAGGAAGCAGGATGAGTAT-AACCAGCAGCTGCTAAT  748
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCATGCCTCTCAAGGAAGCAGGATGAGTATAAACCAGCAGCTGCTAAT  750

seq1  CCTGAGTCAAAAGCTTCCTTGCTATGATGTAGCT-CACTGAGAGC-TTAC  796
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  CCTGAGTCAAAAGCTTCCTTGCTATGATGTAGCTCCACTGAGAGCTTTAC  800

seq1  TTACCTAGAGTGTCACAGGTTCCTGGGTTCATTCCTCAGTACTAAAGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAGAGTGTCACAGGTTCCTGGGTTCATTCCTCAGTACTAAAGAAA  850

seq1  AGGATGGGAGAGACTTTAGCCAAGTCTAGTTTGCATCCATGTCAATCCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGAGAGACTTTAGCCAAGTCTAGTTTGCATCCATGTCAATCCAA  900

seq1  CTAGAGAGGCTGAGGCAAGCGGATCACAAGTACAAGGCCAGCCTGAGCAA  946
      ||||||||||||||  | ||||||||| ||||||| ||||||||||||| 
seq2  CTAGAGAGGCTGAGCAAGGCGGATCAC-AGTACAA-GCCAGCCTGAGCAC  948

seq1  CT-TAATAAGCTACTGT-CTCAATGGAATATGTAGCTAGTA-TTTGAGC  992
       | |||||   |||||| ||||||| ||||||||||||| | |||||||
seq2  TTATAATAGCTTACTGTCCTCAATGAAATATGTAGCTAGGATTTTGAGC  997