BAC Information

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BAC

Clone NameB6Ng01-127B24
Chromosome2 (Build37)
Map Location 74,454,345 - 74,605,701
singlet/doubletdoublet
Overlap geneEvx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1
Upstream geneChn1, Atf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519
Downstream geneMtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127B24.bB6Ng01-127B24.g
ACCDH929325DH929326
length1,1361,004
definitionDH929325|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B24, 5' end.DH929326|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,454,345 - 74,455,482)(74,604,697 - 74,605,701)
sequence
gaattccattttgccaaccctggaaggtaacaggaatttactttcctcca
tttcacattgcctcgaggcagatgaagaaacaggctcttctctaatcagg
acagttctgggcctaacttacttcccagaaatgagccccacagggggcag
gggtcggggtggggaggctaaagacacctatgaaggattcatcatacttt
tctgtctcctcttcctgtgatattttccacattccctgactgtttccctg
accccaggagaaggtttttttctttgcaatgctgagaagtgaatctggaa
ccttgggcatatagagcaaatactttgccactgaggtacccatggtccca
gaaggactttttttttcttttgtattttatgttatgagtgttttgcctgc
attgtgtgcatttgcaccatgtgtgtacctactacctgatgacagcattg
gccagaaagaggtaccaaatcctctagaaatgaagttatatgcagtagtg
atggacttacaggctgttgtgaactgccatgtgggtgctaggaaccaaac
tcaagtcctctgcaagagcagcaagttctcttaactgctgagccatctct
caagcccctcttattaaaatttttattttacttgtaattatgtgtatgtg
tgtgtgtctctgtgtgtatgcacatggattggagcacccacagaggccag
aggggctgtcagatatcctgggatcccaggaaaattcagttcccagtatt
tgcatggcaatatggatcaataatcatttgtaattacactaacaggagcc
cagctacttcatctgaccagcggcagtaaccaggctcacacatgatgtgc
atacatgcatgcaggcaaaaacattcctgcacataaaataattctaaaat
aatttgtaaagaactttatcagcttaaaaatacctttaaaacaccacaat
aatgctataggttactatatttatgtccataaaagtatatgaagagtgga
ccatagaagaacacgaagcttatgttttgaataaatgaacagtcatgggg
aggaggcttagctacaaacttaagcacggaatctgaattgtcttcatact
gctaccaccagctgccagcctcaggcggttaggaac
gaattctttccttttcctcccaattatcttgaatccagaaaagtagacac
tctgtcattatatgaagacaaaggaacattgaatacttaattatacaaca
gccagaactgtccattgtgtattcattcttataatagattgctggagggt
gaattagcatatttagtttgaaatcttgtgagatataaatggggttgttt
tagtggctactctttgcatgtcagcgtcagagtacaaagatggctgctgt
aaaatagcacagagctcccactagtatgtaggagagtgttccctaagtga
atcacatgataagctgtggttgacgatgtctaaaatccaccttttctgag
ctcccgcagtgtccctgtgatcctacagacttgcttccctagcaacaact
ttttccacatggaaatctgaaaatcaaatacgcaaaagccattgagtcgt
agcattctctatagtgtttctttactggaagagatctccaaaggtcacct
agttcgtcccatctccagccaggactcttcctaatactgaatatagctgt
atagtgatctgcattaagaaagcttttaaagatccctggggttggtcaaa
aaatagctaatattggcctgattcatagaacagcattatatgaatgtcaa
atagccaccttcatcaaggaagacatccatcagggctgttagtgctaggg
ccagcttcatgagaaacaccactttactttctcaggagaacgggtggtag
gattaaagaaatgatccaagggtggtagtagtttttgtttaagtaagtca
atggctggctaaaaggaagaactatgtcatgttcaaagaccacgcaggga
aacttctaaaggtgactacggagggaccatttagtaggacttcttacaag
tctttcaaacagcgtaaatgcaaagaaggaagcacgctgttaagcaaatc
tggatcccgcttaagtattggaagggacaataaaaacatggaaaatatat
caac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74454345_74455482
seq2: B6Ng01-127B24.b_46_1181

seq1  GAATTCCATTTTGCCAACCCTGGAAGGTAACAGGAATTTACTTTCCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTGCCAACCCTGGAAGGTAACAGGAATTTACTTTCCTCCA  50

seq1  TTTCACATTGCCTCGAGGCAGATGAAGAAACAGGCTCTTCTCTAATCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTGCCTCGAGGCAGATGAAGAAACAGGCTCTTCTCTAATCAGG  100

seq1  ACAGTTCTGGGCCTAACTTACTTCCCAGAAATGAGCCCCACAGGGGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTGGGCCTAACTTACTTCCCAGAAATGAGCCCCACAGGGGGCAG  150

seq1  GGGTCGGGGTGGGGAGGCTAAAGACACCTATGAAGGATTCATCATACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGGGGTGGGGAGGCTAAAGACACCTATGAAGGATTCATCATACTTT  200

seq1  TCTGTCTCCTCTTCCTGTGATATTTTCCACATTCCCTGACTGTTTCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCCTCTTCCTGTGATATTTTCCACATTCCCTGACTGTTTCCCTG  250

seq1  ACCCCAGGAGAAGGTTTTTTTCTTTGCAATGCTGAGAAGTGAATCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGGAGAAGGTTTTTTTCTTTGCAATGCTGAGAAGTGAATCTGGAA  300

seq1  CCTTGGGCATATAGAGCAAATACTTTGCCACTGAGGTACCCATGGTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGCATATAGAGCAAATACTTTGCCACTGAGGTACCCATGGTCCCA  350

seq1  GAAGGACTTTTTTTTTCTTTTGTATTTTATGTTATGAGTGTTTTGCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACTTTTTTTTTCTTTTGTATTTTATGTTATGAGTGTTTTGCCTGC  400

seq1  ATTGTGTGCATTTGCACCATGTGTGTACCTACTACCTGATGACAGCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGCATTTGCACCATGTGTGTACCTACTACCTGATGACAGCATTG  450

seq1  GCCAGAAAGAGGTACCAAATCCTCTAGAAATGAAGTTATATGCAGTAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAGAGGTACCAAATCCTCTAGAAATGAAGTTATATGCAGTAGTG  500

seq1  ATGGACTTACAGGCTGTTGTGAACTGCCATGTGGGTGCTAGGAACCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTACAGGCTGTTGTGAACTGCCATGTGGGTGCTAGGAACCAAAC  550

seq1  TCAAGTCCTCTGCAAGAGCAGCAAGTTCTCTTAACTGCTGAGCCATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCTCTGCAAGAGCAGCAAGTTCTCTTAACTGCTGAGCCATCTCT  600

seq1  CAAGCCCCTCTTATTAAAATTTTTATTTTACTTGTAATTATGTGTATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCTCTTATTAAAATTTTTATTTTACTTGTAATTATGTGTATGTG  650

seq1  TGTGTGTCTCTGTGTGTATGCACATGGATTGGAGCACCCACAGAGGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTCTGTGTGTATGCACATGGATTGGAGCACCCACAGAGGCCAG  700

seq1  AGGGGCTGTCAGATATCCTGGGATCCCAGGAAAATTCAGTTCCCAGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGTCAGATATCCTGGGATCCCAGGAAAATTCAGTTCCCAGTATT  750

seq1  TGCATGGCAATATGGATCAATAATCATTTGTAATTACACTAACAGGGAGC  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCATGGCAATATGGATCAATAATCATTTGTAATTACACTAACA-GGAGC  799

seq1  CCAGCTACTTCATCTGACCAGCGGCAGTAACCAGGCTCACACATGATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTACTTCATCTGACCAGCGGCAGTAACCAGGCTCACACATGATGTG  849

seq1  CATACATGCATGCAGGCAAAAACATTCCTGCACATAAAATAATCTAAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  CATACATGCATGCAGGCAAAAACATTCCTGCACATAAAATAATTCTAAAA  899

seq1  TAATTTGTAAAGAACTTTATCAGCTTAAAAATACCTTTAAAACACCACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTAAAGAACTTTATCAGCTTAAAAATACCTTTAAAACACCACAA  949

seq1  TAATGCTAATAGGTTACTATATTTATGTCCATAAAAGTATATTGAGAGTG  1000
      ||||||| ||||||||||||||||||||||||||||||||||  ||||||
seq2  TAATGCT-ATAGGTTACTATATTTATGTCCATAAAAGTATATGAAGAGTG  998

seq1  GACCATAAGAAGAACACGAAGC-TATG-TCTGAATAAAATGAACAGTCAT  1048
      |||||| ||||||||||||||| |||| | ||||| ||||||||||||||
seq2  GACCAT-AGAAGAACACGAAGCTTATGTTTTGAAT-AAATGAACAGTCAT  1046

seq1  -GTGAGGAGGCTAAGCTACAAACCTAAGCACGGGATCTGAA-TGTCTTCA  1096
       | ||||||||| |||||||||| ||||||||| ||||||| ||||||||
seq2  GGGGAGGAGGCTTAGCTACAAACTTAAGCACGGAATCTGAATTGTCTTCA  1096

seq1  TACTGCTACTACACAGCTGTCAAGCCGCAGGCGGTTAGGAAC  1138
      ||||||||| || |||||| | |||| |||||||||||||||
seq2  TACTGCTACCAC-CAGCTG-CCAGCCTCAGGCGGTTAGGAAC  1136

seq1: chr2_74604697_74605701
seq2: B6Ng01-127B24.g_66_1069 (reverse)

seq1  GTTGATATTATTCTCATGTTTTATTATT-TGCCTCTCAATAACTTGATGC  49
      ||||||||  ||  |||||||  ||||| | |||  |||| |||| |   
seq2  GTTGATATATTTTCCATGTTT--TTATTGTCCCTTCCAAT-ACTTAAGCG  47

seq1  GGAT-CAGATCTTGCTTAAAACAGC-TGCTTCC-TCTCTGCATTCTACAG  96
      |||| ||||| ||||||  |||||| ||||||| ||| |||||| ||| |
seq2  GGATCCAGAT-TTGCTT--AACAGCGTGCTTCCTTCTTTGCATT-TAC-G  92

seq1  CTGTTTGAAAAGACTTGTTAGAAGTCCTACTTAATTGCTCCTCTGTAGTC  146
      ||||||| |||||||||| |||||||||||| ||| |  |||| ||||||
seq2  CTGTTTG-AAAGACTTGTAAGAAGTCCTACTAAATGGTCCCTCCGTAGTC  141

seq1  ACCTCTAAGAGTTT-CCTGCTGTGGTCTTTG-ACATGAC-TAGTCTTTCC  193
      |||| ||  ||||| ||||| |||||||||| ||||||| ||||  ||||
seq2  ACCTTTAGAAGTTTCCCTGC-GTGGTCTTTGAACATGACATAGTTCTTCC  190

seq1  TTTTAGACAAGCATTGAACTACCTAAACAAAAACTACTACCACCC-TGGA  242
      |||||| ||  ||||||  ||| |||||||||||||||||||||| ||||
seq2  TTTTAGCCAGCCATTGACTTACTTAAACAAAAACTACTACCACCCTTGGA  240

seq1  TCATTTCTTTAAT-CTACCACCCGTTCT-CTGAGAAAGTAAAGT-GTGTT  289
      ||||||||||||| |||||||||||||| ||||||||||||||| |||||
seq2  TCATTTCTTTAATCCTACCACCCGTTCTCCTGAGAAAGTAAAGTGGTGTT  290

seq1  TCTCATGAAGCTGGCCCTAGCACTTAACAGCCCTGATGGATGTCTTCCTT  339
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTCATGAAGCTGGCCCTAGCAC-TAACAGCCCTGATGGATGTCTTCCTT  339

seq1  GATGAAGGTGGCTATTTTGACATTCATATAATGCTGTTCTATGAATCAGG  389
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATGAAGGTGGCTA-TTTGACATTCATATAATGCTGTTCTATGAATCAGG  388

seq1  CCAATATTAGCTATTTTTTGACCAACCCCAGGGATCTTTAAAAGCTTTCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTAGCTATTTTTTGACCAACCCCAGGGATCTTTAAAAGCTTTCT  438

seq1  TAATGCAGATCACTATACAGCTATATTCAGTATTAGGAAGAGTCCTGGCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGATCACTATACAGCTATATTCAGTATTAGGAAGAGTCCTGGCT  488

seq1  GGAGATGGGACGAACTAGGTGACCTTTGGAGATCTCTTCCAGTAAAGAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGGACGAACTAGGTGACCTTTGGAGATCTCTTCCAGTAAAGAAA  538

seq1  CACTATAGAGAATGCTACGACTCAATGGCTTTTGCGTATTTGATTTTCAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAGAGAATGCTACGACTCAATGGCTTTTGCGTATTTGATTTTCAG  588

seq1  ATTTCCATGTGGAAAAAGTTGTTGCTAGGGAAGCAAGTCTGTAGGATCAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATGTGGAAAAAGTTGTTGCTAGGGAAGCAAGTCTGTAGGATCAC  638

seq1  AGGGACACTGCGGGAGCTCAGAAAAGGTGGATTTTAGACATCGTCAACCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACTGCGGGAGCTCAGAAAAGGTGGATTTTAGACATCGTCAACCA  688

seq1  CAGCTTATCATGTGATTCACTTAGGGAACACTCTCCTACATACTAGTGGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATCATGTGATTCACTTAGGGAACACTCTCCTACATACTAGTGGG  738

seq1  AGCTCTGTGCTATTTTACAGCAGCCATCTTTGTACTCTGACGCTGACATG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTGCTATTTTACAGCAGCCATCTTTGTACTCTGACGCTGACATG  788

seq1  CAAAGAGTAGCCACTAAAACAACCCCATTTATATCTCACAAGATTTCAAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTAGCCACTAAAACAACCCCATTTATATCTCACAAGATTTCAAA  838

seq1  CTAAATATGCTAATTCACCCTCCAGCAATCTATTATAAGAATGAATACAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATGCTAATTCACCCTCCAGCAATCTATTATAAGAATGAATACAC  888

seq1  AATGGACAGTTCTGGCTGTTGTATAATTAAGTATTCAATGTTCCTTTGTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAGTTCTGGCTGTTGTATAATTAAGTATTCAATGTTCCTTTGTC  938

seq1  TTCATATAATGACAGAGTGTCTACTTTTCTGGATTCAAGATAATTGGGAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAATGACAGAGTGTCTACTTTTCTGGATTCAAGATAATTGGGAG  988

seq1  GAAAAGGAAAGAATTC  1005
      ||||||||||||||||
seq2  GAAAAGGAAAGAATTC  1004