BAC Information

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BAC

Clone NameB6Ng01-127C21
Chromosome2 (Build37)
Map Location 52,755,983 - 52,874,016
singlet/doubletdoublet
Overlap geneFmnl2
Upstream geneRbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2
Downstream genePrpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127C21.bB6Ng01-127C21.g
ACCDH929363DH929364
length6041,095
definitionDH929363|Mus musculus domesticus DNA, BAC clone: B6Ng01-127C21, 5' end.DH929364|Mus musculus domesticus DNA, BAC clone: B6Ng01-127C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,755,983 - 52,756,586)(52,872,948 - 52,874,016)
sequence
gaattccaccagcccctgtccatccttttggctggttccatttggatata
aacaattgcacatttgtactatgcattttttttaaatgtttaatgtactt
ttgttcgtatttcttttctgagaactgtatcaacagtcaggatttgggtt
gtctttaacccatcccatatccgcttcttgcttccttatttgttaagcaa
tgtttgtgtgatttgctgagcatgcagaaatgatcacattggattctgcc
cagagaagtttgtgtatatgtagtaaatggggacagtaatcatggcctgc
tgcctggtttcattgttggtggatttagcaaaagcttagaaggaaatgct
gtgtagacatgcttactgcatgaacaagcattattggcgtcatcttaaca
agctagcaggaagtgtgggccatgagcaaaagtcttcatggaatgagttt
tctcgagggtttttcaagagtgttaaaaggtgtgtcttgaagcaggtgac
tttaggagaagtccagatgctggaaggaatggccacagaaggacgggagt
ggccttaaaataacaaacaaataccacataaatgctggtggggggagggg
gggt
gaattccatacatcttccaagataagctcaactcacacaggaacaacgta
atatttcctctctttgcttcctccatagaaaatggctgtttcttacctga
tcacagatcagctcccattttttctcattgtcatactgccgcagtagcct
ggctttgtcaggaggtaggttcatagcattctgtgaaaataaaaagtaaa
aagatctgttacataccacagtacgtcacaggtatagaaaaaaaccacca
aggtcctttcacgacagcatttccatggctagcaaatgattcgggcaggg
tacctgcattagtcattcccacatccctctgcaattcatttatatataag
ggaaacactcacacccacactcaggagatgaaagaaaggagaatcctgtt
ttaaaacaagcagacaagcacttcagcaaaagtggctctgttcattcatt
tcatggcagcctcccttatagccaataaagacgtcagaagtggcttttca
gaaactatggttcccctgtagacacaaagacaccaaaagaagatttggcg
gccagaaaaacactgaaaagaaaagtgtcaagtttgcatctgatgacagg
tagcaatgcattctacgtaagcgtagcaacttgaattcatcttgcagatc
ccacttaagtgaagagaggaccaaaataaaaggcagaataataaataaag
ataactgtcttccggggcttctgtgaaaacatggaatgccctctggctcg
ctaacatcagccaaatcaattcaaccctttaactgctcaaatacaagggt
gagcacggcagcaaggatcagacacccaaagtcaacagaaaatgtagacc
ttcaacccccccccaaacccctggtactactatttgaagaacaaatggtc
ctgcaagagttgaaacatgaacttgcctgaatacagacatttgtgatgaa
ccttgaccgttcaaaaggccaatcttacattataccagacccttcgtcga
caacgaggagactactctgtgtgcgcaaacctgagacacaaaaaaaatca
gatctgtgtcctctaaagctctctgtggctaaccttgaacataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52755983_52756586
seq2: B6Ng01-127C21.b_45_648

seq1  GAATTCCACCAGCCCCTGTCCATCCTTTTGGCTGGTTCCATTTGGATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCAGCCCCTGTCCATCCTTTTGGCTGGTTCCATTTGGATATA  50

seq1  AACAATTGCACATTTGTACTATGCATTTTTTTTAAATGTTTAATGTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTGCACATTTGTACTATGCATTTTTTTTAAATGTTTAATGTACTT  100

seq1  TTGTTCGTATTTCTTTTCTGAGAACTGTATCAACAGTCAGGATTTGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCGTATTTCTTTTCTGAGAACTGTATCAACAGTCAGGATTTGGGTT  150

seq1  GTCTTTAACCCATCCCATATCCGCTTCTTGCTTCCTTATTTGTTAAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAACCCATCCCATATCCGCTTCTTGCTTCCTTATTTGTTAAGCAA  200

seq1  TGTTTGTGTGATTTGCTGAGCATGCAGAAATGATCACATTGGATTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGATTTGCTGAGCATGCAGAAATGATCACATTGGATTCTGCC  250

seq1  CAGAGAAGTTTGTGTATATGTAGTAAATGGGGACAGTAATCATGGCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGTTTGTGTATATGTAGTAAATGGGGACAGTAATCATGGCCTGC  300

seq1  TGCCTGGTTTCATTGTTGGTGGATTTAGCAAAAGCTTAGAAGGAAATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTTTCATTGTTGGTGGATTTAGCAAAAGCTTAGAAGGAAATGCT  350

seq1  GTGTAGACATGCTTACTGCATGAACAAGCATTATTGGCGTCATCTTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACATGCTTACTGCATGAACAAGCATTATTGGCGTCATCTTAACA  400

seq1  AGCTAGCAGGAAGTGTGGGCCATGAGCAAAAGTCTTCATGGAATGAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCAGGAAGTGTGGGCCATGAGCAAAAGTCTTCATGGAATGAGTTT  450

seq1  TCTCGAGGGTTTTTCAAGAGTGTTAAAAGGTGTGTCTTGAAGCAGGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAGGGTTTTTCAAGAGTGTTAAAAGGTGTGTCTTGAAGCAGGTGAC  500

seq1  TTTAGGAGAAGTCCAGATGCTGGAAGGAATGGCCACAGAAGGACGGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAGAAGTCCAGATGCTGGAAGGAATGGCCACAGAAGGACGGGAGT  550

seq1  GGCCTTAAAATAACAAACAAATACCACATAAATGCTGGTGGGGGGAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAAAATAACAAACAAATACCACATAAATGCTGGTGGGGGGAGGGG  600

seq1  GGGT  604
      ||||
seq2  GGGT  604

seq1: chr2_52872948_52874016
seq2: B6Ng01-127C21.g_68_1162 (reverse)

seq1  CTTA-GTTCAAGTGTTTAGACCACAG-GAGCTTTAGAGAGGACACAGATC  48
      |||| ||||||  | |||| |||||| |||||||  ||||||||||||||
seq2  CTTATGTTCAA--GGTTAG-CCACAGAGAGCTTT--AGAGGACACAGATC  45

seq1  TGAATTTCTTCTGGGCTCTCAGGCTTTGC---CACCAAG-----TCC---  87
      || |||| || || | ||||||| |||||   |||  ||     |||   
seq2  TG-ATTTTTTTTGTG-TCTCAGG-TTTGCGCACACAGAGTAGTCTCCTCG  92

seq1  -TGTCG-CTAAGGGTCTTGGTAATATGTATGATTGGCTATTTGGAACGTC  135
       ||||| | ||||||| |||||  ||||| |||||||  |||| |  |||
seq2  TTGTCGACGAAGGGTC-TGGTATAATGTAAGATTGGCCTTTTGAACGGTC  141

seq1  AAGG-TCAT-ACAAATGCCTGTATTCAGGCAAGTCCATG-TTCAGCTC-T  181
      |||| |||| ||||||| |||||||||||||||| |||| |||| ||| |
seq2  AAGGTTCATCACAAATGTCTGTATTCAGGCAAGTTCATGTTTCAACTCTT  191

seq1  GCA-GAGCATGTG-TCCTCATAT-GTAGTAACAGGGGTTT-GTGTGGTGT  227
      ||| || ||| || || ||| || |||||| ||||||||| | | || ||
seq2  GCAGGACCATTTGTTCTTCAAATAGTAGTACCAGGGGTTTGGGGGGGGGT  241

seq1  TG-ATGTCTACA-TATCTGTTGACTTT-GGTGTCTGATCCTTGCTGCC-T  273
      || | ||||||| | |||||||||||| |||||||||||||||||||| |
seq2  TGAAGGTCTACATTTTCTGTTGACTTTGGGTGTCTGATCCTTGCTGCCGT  291

seq1  GCTCAACCTCGTATTTGAGCAGTT-AAGGGTTGAATTGA-TTGGCTGATG  321
      ||||| ||| |||||||||||||| |||||||||||||| ||||||||||
seq2  GCTCACCCTTGTATTTGAGCAGTTAAAGGGTTGAATTGATTTGGCTGATG  341

seq1  TTAGCGAGCCAGAGGGCATGCCATGTTTTCACAGAAGGCCCAGAAGACAG  371
      ||||||||||||||||||| ||||||||||||||||| ||| ||||||||
seq2  TTAGCGAGCCAGAGGGCATTCCATGTTTTCACAGAAGCCCCGGAAGACAG  391

seq1  TTATCTTTATTTATTTATCTGCCTTTTATTTT-GTCCTCTC-TCACTTAT  419
      |||||||||||||||  ||||||||||||||| |||||||| ||||||| 
seq2  TTATCTTTATTTATTATTCTGCCTTTTATTTTGGTCCTCTCTTCACTTAA  441

seq1  GTGGGATCTGC-AGATGAATTCAAGTTGCTACGCTTACGTAGAATGCATT  468
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATCTGCAAGATGAATTCAAGTTGCTACGCTTACGTAGAATGCATT  491

seq1  GCTACCTGTCATCAGATGCAAACTTGACACTTT--CTTTCAGTG-TTTTC  515
      |||||||||||||||||||||||||||||||||   |||||||| |||||
seq2  GCTACCTGTCATCAGATGCAAACTTGACACTTTTCTTTTCAGTGTTTTTC  541

seq1  TGGCCGCCAAGTCTTCTTTTGGTGTCTTTGTGTCTACAGGGGAACCATAG  565
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGCCAAATCTTCTTTTGGTGTCTTTGTGTCTACAGGGGAACCATAG  591

seq1  TTTCTGAAAAGCCACTTCTGACGTCTTTATTGGCTATAAGGGAGGCTGCC  615
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAAAGCCACTTCTGACGTCTTTATTGGCTATAAGGGAGGCTGCC  641

seq1  ATGAAATGAATGAACAGAGCCACTTTTGCTGAAGTGCTTGTCTGCTTGTT  665
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGAATGAACAGAGCCACTTTTGCTGAAGTGCTTGTCTGCTTGTT  691

seq1  TTAAAACAGGATTCTCCTTTCTTTCATCTCCTGAGTGTGGGTGTGAGTGT  715
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAGGATTCTCCTTTCTTTCATCTCCTGAGTGTGGGTGTGAGTGT  741

seq1  TTCCCTTATATATAAATGAATTGCAGAGGGATGTGGGAATGACTAATGCA  765
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTATATATAAATGAATTGCAGAGGGATGTGGGAATGACTAATGCA  791

seq1  GGTACCCTGCCCGAATCATTTGCTAGCCATGGAAATGCTGTCGTGAAAGG  815
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCTGCCCGAATCATTTGCTAGCCATGGAAATGCTGTCGTGAAAGG  841

seq1  ACCTTGGTGGTTTTTTTCTATACCTGTGACGTACTGTGGTATGTAACAGA  865
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTGGTTTTTTTCTATACCTGTGACGTACTGTGGTATGTAACAGA  891

seq1  TCTTTTTACTTTTTATTTTCACAGAATGCTATGAACCTACCTCCTGACAA  915
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTACTTTTTATTTTCACAGAATGCTATGAACCTACCTCCTGACAA  941

seq1  AGCCAGGCTACTGCGGCAGTATGACAATGAGAAAAAATGGGAGCTGATCT  965
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCTACTGCGGCAGTATGACAATGAGAAAAAATGGGAGCTGATCT  991

seq1  GTGATCAGGTAAGAAACAGCCATTTTCTATGGAGGAAGCAAAGAGAGGAA  1015
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGGTAAGAAACAGCCATTTTCTATGGAGGAAGCAAAGAGAGGAA  1041

seq1  ATATTACGTTGTTCCTGTGTGAGTTGAGCTTATCTTGGAAGATGTATGGA  1065
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACGTTGTTCCTGTGTGAGTTGAGCTTATCTTGGAAGATGTATGGA  1091

seq1  ATTC  1069
      ||||
seq2  ATTC  1095