BAC Information

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BAC

Clone NameB6Ng01-127M08
Chromosome2 (Build37)11 (Build37)
Map Location 129,514,744 - 129,515,76887,070,075 - 87,070,403
singlet/doubletsingletsinglet
Overlap genePdyn
Upstream geneMertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa
Downstream genePpia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127M08.bB6Ng01-127M08.g
ACCDH929799DH929800
length1,028531
definitionDH929799|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M08, 5' end.DH929800|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,514,744 - 129,515,768)(87,070,075 - 87,070,403)
sequence
gaattctgaaggtctgcggctggagtccccaagcttaggcacattgcttt
cctaagagtgagcacggacacactatgtgatgggcacactgtgtgcagct
cagtgaacacagaccagtcaagatattaaacactaatcatcatgatctca
gggaatcaaccctcattagatgaggaaaatgagactcaggagagagttcc
agagtaagggagcaagaaagggccagaacccgagcctgagtgttgtccac
cacagtcagctaataaacactactgctgggtgaggtgtgggagaaagcac
gagtcaaaataatgtcagcaagccaggagcaaaggcccaggcccaggaga
gccccagccccacaaggcagattctgagagtgtcatggtgatagcttctg
ccaggagcctgaatttggaggtgcctgtcagccaggaaaggaagctttgg
aatgtgcacccagtgcttcagatggcagagcgagcacaccatggtctaca
ccccgttgccaggcacttggctgcctggagacatggcctctatgcagacc
ttggggagccatggtaatgaagtctagaatgcagtgggaactagacaacc
tcagacctcggtacccggctgtccactccatgcactgcggcagaggcaca
gctgcccagatatgcaactgcccctctctgggctctgcacacaaatagaa
taacatggagaaaccttgctgagacctaccagggggttgatgggacgggg
cccatcctgaatcctcactgcacacagggagcacagggacaggcagtccg
ccataacattagagggcatcacgaggaggcaagctgccagcatcagcctg
gaccacgccattctgactcacttgttttgctggagagagagaaaggacaa
agtggtgaagtgtgtctgaagcaaacaaggccacctcttactcgtgtgtg
gtgtaagaagcagcacgaagcaggcattcttctgcccaccctgtcttcaa
ggacaactaagctggggagaaaacctag
tattaagttctattaagaatttttgcatctgtgttcatcagcaatatttt
tctgcagtatctctgtgtgtgcatttaacttgctttttatattagaatga
taatggctttgtaaaattggttttgaaatgttctttctgttccttttctc
tttttttgaataacaacaatttttagttgtagatagttttcaagagtctg
gtagagctctactgggaattcatctggacctgggcttttgttttttattc
agaaggcgttttaatgctgtttcatttttcttcttttttatcactctact
taggatggtgatctcttcttgatttaacttgggtggttggatgcctctgt
aaacttctagaagcttgtccatttcttttagattttccattttaaatttt
tttgggggggggggttcgagacagggtttctctgtatagccctggctgtc
ctggaactcactctgtagaacaggctggcctcgaattcagaaaatccgcc
tgcctctgcctccccgagtgctggggattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129514744_129515768
seq2: B6Ng01-127M08.b_47_1074

seq1  GAATTCTGAAGGTCTGCGGCTGGAGTCCCCAAGCTTAGGCACATTGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGGTCTGCGGCTGGAGTCCCCAAGCTTAGGCACATTGCTTT  50

seq1  CCTAAGAGTGAGCACGGACACACTATGTGATGGGCACACTGTGTGCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGTGAGCACGGACACACTATGTGATGGGCACACTGTGTGCAGCT  100

seq1  CAGTGAACACAGACCAGTCAAGATATTAAACACTAATCATCATGATCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACACAGACCAGTCAAGATATTAAACACTAATCATCATGATCTCA  150

seq1  GGGAATCAACCCTCATTAGATGAGGAAAATGAGACTCAGGAGAGAGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCAACCCTCATTAGATGAGGAAAATGAGACTCAGGAGAGAGTTCC  200

seq1  AGAGTAAGGGAGCAAGAAAGGGCCAGAACCCGAGCCTGAGTGTTGTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGGGAGCAAGAAAGGGCCAGAACCCGAGCCTGAGTGTTGTCCAC  250

seq1  CACAGTCAGCTAATAAACACTACTGCTGGGTGAGGTGTGGGAGAAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCAGCTAATAAACACTACTGCTGGGTGAGGTGTGGGAGAAAGCAC  300

seq1  GAGTCAAAATAATGTCAGCAAGCCAGGAGCAAAGGCCCAGGCCCAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAAATAATGTCAGCAAGCCAGGAGCAAAGGCCCAGGCCCAGGAGA  350

seq1  GCCCCAGCCCCACAAGGCAGATTCTGAGAGTGTCATGGTGATAGCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCCCCACAAGGCAGATTCTGAGAGTGTCATGGTGATAGCTTCTG  400

seq1  CCAGGAGCCTGAATTTGGAGGTGCCTGTCAGCCAGGAAAGGAAGCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCCTGAATTTGGAGGTGCCTGTCAGCCAGGAAAGGAAGCTTTGG  450

seq1  AATGTGCACCCAGTGCTTCAGATGGCAGAGCGAGCACACCATGGTCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCACCCAGTGCTTCAGATGGCAGAGCGAGCACACCATGGTCTACA  500

seq1  CCCCGTTGCCAGGCACTTGGCTGCCTGGAGACATGGCCTCTATGCAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTTGCCAGGCACTTGGCTGCCTGGAGACATGGCCTCTATGCAGACC  550

seq1  TTGGGGAGCCATGGTAATGAAGTCTAGAATGCAGTGGGAACTAGACAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGCCATGGTAATGAAGTCTAGAATGCAGTGGGAACTAGACAACC  600

seq1  TCAGACCTCGGTACCCGGCTGTCCACTCCATGCACTGCGGCAGAGGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTCGGTACCCGGCTGTCCACTCCATGCACTGCGGCAGAGGCACA  650

seq1  GCTGCCCAGATATGCAACTGCCCCTCTCTGGGCTCTGCACACAAATAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCAGATATGCAACTGCCCCTCTCTGGGCTCTGCACACAAATAGAA  700

seq1  TAACATGGAGAAACCTTGCTGAGACCTACCAGGGGGTTGATGGGACGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGAGAAACCTTGCTGAGACCTACCAGGGGGTTGATGGGACGGGG  750

seq1  CCCATCCTGAATCCTCACTGCACACAGGGAGCACAGGGACAGGCAGTCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTGAATCCTCACTGCACACAGGGAGCACAGGGACAGGCAGTCCG  800

seq1  CCATAACATTAGAGGGCATCACGAGGAGGCAAGCTGCCAGCATCAGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACATTAGAGGGCATCACGAGGAGGCAAGCTGCCAGCATCAGCCTG  850

seq1  GACCACGCCATTCTGACTCACTTG-TTTGCTGGAGAGAGAG-AAGGACAA  898
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  GACCACGCCATTCTGACTCACTTGTTTTGCTGGAGAGAGAGAAAGGACAA  900

seq1  GGTGGTGAAGTGTGTCTGAAGCAGACAAGGCCACCTCTTACTCGTGTGTG  948
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTGGTGAAGTGTGTCTGAAGCAAACAAGGCCACCTCTTACTCGTGTGTG  950

seq1  GTGTAAG-AGCAGCACGAAGCAGGCATTCTCCTGCCCACCCTGTCGTCAA  997
      ||||||| |||||||||||||||||||||| |||||||||||||| ||||
seq2  GTGTAAGAAGCAGCACGAAGCAGGCATTCTTCTGCCCACCCTGTCTTCAA  1000

seq1  GGACACAGAAGCTGGGGAGAGAACCTAG  1025
      |||||   |||||||||||| |||||||
seq2  GGACAACTAAGCTGGGGAGAAAACCTAG  1028

seq1: chr11_87070075_87070403
seq2: B6Ng01-127M08.g_464_605

seq1  TTTTAAAGACAGGGTCTTTTGGGGGGGGGGGGTTGGTTGGTTTTTCTTTG  50
      |||||||       | |||| |||||||||||                  
seq2  TTTTAAA-------TTTTTTTGGGGGGGGGGG------------------  25

seq1  TTTGTTTTGTTTTTGTTTTTTTGTTTTTTTCGAGACAGGGTTTCTCTGTG  100
                                  ||||||||||||||||||||| 
seq2  ----------------------------TTCGAGACAGGGTTTCTCTGTA  47

seq1  TAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAAC  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  TAGCCCTGGCTGTCCTGGAACTCACTCTGTAGAACAGGCTGGCCTCGAAT  97

seq1  TCAG-AAATCCGCCTGCCTCTGCCT-CCCAAGTGCT-GGGATTAAAGGTG  197
      |||| |||||||||||||||||||| ||| |||||| ||||||||     
seq2  TCAGAAAATCCGCCTGCCTCTGCCTCCCCGAGTGCTGGGGATTAA-----  142

seq1  TGCATCACCACTGCCCAGCAAAACAGGGTCTTATTATATAACTTGTGCTG  247
                                                        
seq2  --------------------------------------------------  142

seq1  ACCTGGATCTCACTATGTGGATCAGGCTGGCCTAGAACTCATATAGTTCT  297
                                                        
seq2  --------------------------------------------------  142

seq1  ACCTGCCTCTGCCTGCCGAGTGCTGGGATTAA  329
                                      
seq2  --------------------------------  142