BAC Information

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BAC

Clone NameB6Ng01-127N17
Chromosome2 (Build37)
Map Location 150,046,356 - 150,225,856
singlet/doubletdoublet
Overlap geneEG245174, 3300002I08Rik, LOC100043832
Upstream geneLOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048, C530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120
Downstream geneOTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127N17.bB6Ng01-127N17.g
ACCDH929860DH929861
length1,145491
definitionDH929860|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N17, 5' end.DH929861|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,046,356 - 150,047,519)(150,225,360 - 150,225,856)
sequence
gaattcctaaaattatatctgtgattattaagctcttttataatgggact
tctattaggtccctttctgatagtcaaagctgcaatgagaactctgccag
tgtctcaggtgtcaccagttaatttctgttagatggtaaccagactttct
cctactcagagcacattccaagaggttgtaaaacaattaaccaaaggtca
ttaaaaagcaactaatgatttattataggtactaggacagaagataaaat
ttcaactggctttatctatacaaaacttcactaatacattagttatggtt
ttaaaccttcagtgaacctgtggagctcagacaggtgatggatatttagc
catataattactcctaatggatatgcatgtaaacattcgctgttgtaaac
ttgtatttcaatttacaatttgatttttttgtgtgaacttgtgatgaact
ttgtaacatgtgatcgtgtattctgaaagatgtataagtactgagcacaa
agagatcaagggcagtggagatcaatagaggagactttgcctttccccaa
ttatactaatcttagaggattttttttttttgtttgtttgtttcccgatt
taggaacctttcccccttagttagtttttataagaaactttttacaacta
gtaataaattctataatcacttctctaatgtcttctcttcctgagacttc
caaggaggctgaaagttagatcccagcaatccctgctgagatagaacaaa
ggctatttactgaatcctttgtggcttgaggaagaggtgctaagtgccag
aaactgcagtttctggcttcaggatcacagaaaggcaggtcagctacaat
ggcatagtaacttaaacttagaaaaggtaaactttttattatacagcaac
cctaaatttcttcatagacaaagtcttacttcagaaactcattagacaag
tcttacccttcaccttcactcttcccctcgctgccttagatgaacccaca
ggaaggagcacccgcattgggctggcctcagcatggttgtctttttaaaa
gtcaattgttggtatacttgatttcatttctttatgcatcggcatctgac
ctattttatcgccaggtttcgtattcattaagacttttctttttc
caagcccaaggtgggctcaaggactacctagggcatggtgaaggtcagga
agtaaagttcaattttgcttaggtatttggcaagtcgttgcttggaggca
actataatagaacaatactgaaagacagcacacagatccattcgcaagga
caaaattggagcatacgtgctatgggatgccaaagttctaggagactaag
tttccgtgaaactcttcatctcgggactgcttccaggtttctaaacctgt
caagcaaatcactaccggagtggatgtaacaccatcccctgcttcagctg
gagtattttatagagcatggtcagcacaggtagccaaaacagctaagttc
ccatgagaacttgcaactgcagccaaggcagatgtctctatccaaggcct
taagaccggttgtggcggtggttcccagtggtgagaggaggaggaagccc
tgagcagagcagggcggttggtgtgtgtgtggggtgtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_150046356_150047519
seq2: B6Ng01-127N17.b_54_1193

seq1  CCTAAAATTATATCTGTGATTATTAAGCTCTTTTATAATGGGACTTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATTATATCTGTGATTATTAAGCTCTTTTATAATGGGACTTCTAT  50

seq1  TAGGTCCCTTTCTGATAGTCAAAGCTGCAATGAGAACTCTGCCAGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCCTTTCTGATAGTCAAAGCTGCAATGAGAACTCTGCCAGTGTCT  100

seq1  CAGGTGTCACCAGTTAATTTCTGTTAGATGGTAACCAGACTTTCTCCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTCACCAGTTAATTTCTGTTAGATGGTAACCAGACTTTCTCCTAC  150

seq1  TCAGAGCACATTCCAAGAGGTTGTAAAACAATTAACCAAAGGTCATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCACATTCCAAGAGGTTGTAAAACAATTAACCAAAGGTCATTAAA  200

seq1  AAGCAACTAATGATTTATTATAGGTACTAGGACAGAAGATAAAATTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTAATGATTTATTATAGGTACTAGGACAGAAGATAAAATTTCAA  250

seq1  CTGGCTTTATCTATACAAAACTTCACTAATACATTAGTTATGGTTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTATCTATACAAAACTTCACTAATACATTAGTTATGGTTTTAAA  300

seq1  CCTTCAGTGAACCTGTGGAGCTCAGACAGGTGATGGATATTTAGCCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTGAACCTGTGGAGCTCAGACAGGTGATGGATATTTAGCCATAT  350

seq1  AATTACTCCTAATGGATATGCATGTAAACATTCGCTGTTGTAAACTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCCTAATGGATATGCATGTAAACATTCGCTGTTGTAAACTTGTA  400

seq1  TTTCAATTTACAATTTGATTTTTTTGTGTGAACTTGTGATGAACTTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTACAATTTGATTTTTTTGTGTGAACTTGTGATGAACTTTGTA  450

seq1  ACATGTGATCGTGTATTCTGAAAGATGTATAAGTACTGAGCACAAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGATCGTGTATTCTGAAAGATGTATAAGTACTGAGCACAAAGAGA  500

seq1  TCAAGGGCAGTGGAGATCAATAGAGGAGACTTTGCCTTTCCCCAATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGCAGTGGAGATCAATAGAGGAGACTTTGCCTTTCCCCAATTATA  550

seq1  CTAATCTTAGAGGATTTTTTTTTTTTGTTTGTTTGTTTCCCGATTTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTTAGAGGATTTTTTTTTTTTGTTTGTTTGTTTCCCGATTTAGGA  600

seq1  ACCTTTCCCCCTTAGTTAGTTTTTATAAGAAACTTTTTACAACTAGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCCCCTTAGTTAGTTTTTATAAGAAACTTTTTACAACTAGTAAT  650

seq1  AAATTCTATAATCACTTCTCTAATGTCTTCTCTTCCTGAGACTTCCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATAATCACTTCTCTAATGTCTTCTCTTCCTGAGACTTCCAAGG  700

seq1  AGGCTGAAAGTTAGATCCCAGCAATCCCTGCTGAGATAGAACAAAGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAAGTTAGATCCCAGCAATCCCTGCTGAGATAGAACAAAGGCTA  750

seq1  TTTACTGAATCCTTTGTGGCTTGAGGAAGAGGTGCTAAGTGCCAGAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAATCCTTTGTGGCTTGAGGAAGAGGTGCTAAGTGCCAGAAACT  800

seq1  GCAGTTTCTGGCTTCAGGATCACAG-AAGGCAGGTCAGCTACAATGGCAT  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCAGTTTCTGGCTTCAGGATCACAGAAAGGCAGGTCAGCTACAATGGCAT  850

seq1  AGTAACTTAAACTTAGAAAA-GTAAACTTTTTATTATACAGCAACCCTAA  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTAACTTAAACTTAGAAAAGGTAAACTTTTTATTATACAGCAACCCTAA  900

seq1  ATTTC-TCATAAGACAAAGTCTTACTTCAGAAACTCATAAGACAAAGTCT  947
      ||||| |||| ||||||||||||||||||||||||||| |||| ||||||
seq2  ATTTCTTCAT-AGACAAAGTCTTACTTCAGAAACTCATTAGAC-AAGTCT  948

seq1  TACCCTCCACCTTCACTCTTCCCCCTCCGCTGCCTTAAGATGAACCCACA  997
      |||||| |||||||||||||||||   ||||||||| |||||||||||||
seq2  TACCCTTCACCTTCACTCTTCCCC--TCGCTGCCTT-AGATGAACCCACA  995

seq1  AGAAAAGAAGCACCCCGCATTGGGCTGGCCCTCAGCAATGGTTGTCTTTT  1047
       |  ||| |||| ||||||||||||||| ||||||| |||||||||||||
seq2  GG--AAGGAGCA-CCCGCATTGGGCTGG-CCTCAGC-ATGGTTGTCTTTT  1040

seq1  TTAAAAAAGTCAATTGTTGGTATTACTTTTAAATTTTCATATTCTTTATG  1097
      |   |||||||||||||||||| |||||      |||||| |||||||||
seq2  T---AAAAGTCAATTGTTGGTA-TACTT----GATTTCAT-TTCTTTATG  1081

seq1  CATCGCCATTCTGACCTCATTTTTATTCGCCAGTGTTTCCTATTCATTAA  1147
      ||||| || |||||||| |||||   ||||||| ||||| ||||||||||
seq2  CATCGGCA-TCTGACCT-ATTTT--ATCGCCAG-GTTTCGTATTCATTAA  1126

seq1  GAAATTTTTTCTTTTTC  1164
      ||    |||||||||||
seq2  GA---CTTTTCTTTTTC  1140

seq1: chr2_150225360_150225856
seq2: B6Ng01-127N17.g_70_566 (reverse)

seq1  CCCCACACCCCACACACACACCAACCGCCCTGCTCTGCTCAGGGCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACCCCACACACACACCAACCGCCCTGCTCTGCTCAGGGCTTCCT  50

seq1  CCTCCTCTCACCACTGGGAACCACCGCCACAACCGGTCTTAAGGCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTCACCACTGGGAACCACCGCCACAACCGGTCTTAAGGCCTTGG  100

seq1  ATAGAGACATCTGCCTTGGCTGCAGTTGCAAGTTCTCATGGGAACTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGACATCTGCCTTGGCTGCAGTTGCAAGTTCTCATGGGAACTTAGC  150

seq1  TGTTTTGGCTACCTGTGCTGACCATGCTCTATAAAATACTCCAGCTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGCTACCTGTGCTGACCATGCTCTATAAAATACTCCAGCTGAAG  200

seq1  CAGGGGATGGTGTTACATCCACTCCGGTAGTGATTTGCTTGACAGGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGATGGTGTTACATCCACTCCGGTAGTGATTTGCTTGACAGGTTTA  250

seq1  GAAACCTGGAAGCAGTCCCGAGATGAAGAGTTTCACGGAAACTTAGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGGAAGCAGTCCCGAGATGAAGAGTTTCACGGAAACTTAGTCTC  300

seq1  CTAGAACTTTGGCATCCCATAGCACGTATGCTCCAATTTTGTCCTTGCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTTTGGCATCCCATAGCACGTATGCTCCAATTTTGTCCTTGCGA  350

seq1  ATGGATCTGTGTGCTGTCTTTCAGTATTGTTCTATTATAGTTGCCTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCTGTGTGCTGTCTTTCAGTATTGTTCTATTATAGTTGCCTCCAA  400

seq1  GCAACGACTTGCCAAATACCTAAGCAAAATTGAACTTTACTTCCTGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGACTTGCCAAATACCTAAGCAAAATTGAACTTTACTTCCTGACCT  450

seq1  TCACCATGCCCTAGGTAGTCCTTGAGCCCACCTTGGGCTTGGAATTC  497
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGCCCTAGGTAGTCCTTGAGCCCACCTTGGGCTTGGAATTC  497