BAC Information

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BAC

Clone NameB6Ng01-127N23
Chromosome2 (Build37)1 (Build37)
Map Location 142,776,681 - 142,777,69822,170,142 - 22,171,019
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127N23.bB6Ng01-127N23.g
ACCDH929872DH929873
length950883
definitionDH929872|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N23, 5' end.DH929873|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,681 - 142,777,698)(22,170,142 - 22,171,019)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagttttatcatac
agatctttcacctccttagttagagtcacgccagatatttatattatttg

gaattcattgacagtacattctcactgagaatgtaacaactacaggagga
aaagttataacctctaaaggagaattctggcagacactgtcgtaagcaag
tggtaagaggtcccagtaataataagacaaatggaatcgtgtgtcggcct
attagacttcaagaggataaacacattatcacttctctggctcttcaaga
gagaagcaaatgcaccatgagtaagacaagctgtactcatacagaggacg
ttctcaaaaacacaggatctgcatcttcaacaggattgggacaatggttt
caaggagaacttagagacatgagagaagcacaaacagatggagcaactta
ttccaacacttgacttggaactgggtctttttgttctaaagattatttaa
ataattgcttcacacacacgatctgtacaattacatgaaaataataaatc
tgtgatcattttctgatattcttggattttggtaatataaaggtactgtc
ttcatttttaataaacattaatttgtgtacgtggagtgatccttttattc
tcatatacatgagaaaagacccttgttctgttttacaactttttcttcta
ttattccaaaattgcttacaaaacacttaattttttttaatgcctctgct
aatagaaaatatcagtcttagtgtcttattccccacagtgtgggaatgca
agtttttactatagccctttattctataagtactgtgtatggaggtttta
atttttattatccagaaaacctacccaaatattgaacttgaattctgtag
ttcacaaggaagagacatccatatttccgacatggccaagtctcctgtta
aagacgtgtcctatatggtacatgcctggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776681_142777698
seq2: B6Ng01-127N23.b_49_606 (reverse)

seq1  CAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACAC  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAGTAGACCAATGGAATAGAATTGAAGATCCAGAAATGAACCCACACAC  50

seq1  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGA  100

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGT  150

seq1  AGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  200

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTC  300

seq1  CTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  350
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATG  350

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  400

seq1  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  450

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  500

seq1  CTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATC  550
      |||||||||||||||||||||||||||||||||||||||| ||       
seq2  CTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA-------  543

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  600
           ||| |||||    |||                             
seq2  ---CTGAACAAAGA----ATTC----------------------------  558

seq1  GTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  650
                                                        
seq2  --------------------------------------------------  558

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  700
                                                        
seq2  --------------------------------------------------  558

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  750
                                                        
seq2  --------------------------------------------------  558

seq1  GGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAA  800
                                                        
seq2  --------------------------------------------------  558

seq1  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  850
                                                        
seq2  --------------------------------------------------  558

seq1  ACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTAC  900
                                                        
seq2  --------------------------------------------------  558

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  950
                                                        
seq2  --------------------------------------------------  558

seq1  AGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  1000
                                                        
seq2  --------------------------------------------------  558

seq1  GAACTGAACAAAGAATTC  1018
                        
seq2  ------------------  558

seq1: chr1_22170142_22171019
seq2: B6Ng01-127N23.g_69_951 (reverse)

seq1  AGAG-CAGGCATGTTTACCATATAGGGACA-GTCCTTAAAACAGAGACTT  48
      |||| ||||||||  ||||||||| ||||| ||| |||| |  |||||||
seq2  AGAGCCAGGCATG--TACCATATA-GGACACGTCTTTAACA-GGAGACTT  46

seq1  GCCCAATGTC-GAAATATGGGATG-CTC-TCCCTGTG-ACTACAGATATT  94
      | || ||||| ||||||| ||||| ||| ||| |||| |||||||| |||
seq2  GGCC-ATGTCGGAAATAT-GGATGTCTCTTCCTTGTGAACTACAGA-ATT  93

seq1  CAAGTCTCACTATTTGGTTAGGTTTTCTTGAATAATAAAAATTTAAAACC  144
      ||||| ||| ||||||| ||||||||| || |||||||||| ||||||||
seq2  CAAGT-TCAATATTTGGGTAGGTTTTC-TGGATAATAAAAA-TTAAAACC  140

seq1  T-CATACACAGTACTTTATAGGATAAA-GGCTATAGTAAAAACTTGCATT  192
      | |||||||||||| |||||| ||||| ||||||||||||||||||||||
seq2  TCCATACACAGTAC-TTATAGAATAAAGGGCTATAGTAAAAACTTGCATT  189

seq1  -TCACACTTGTGTGAAT-AGACACT-AGACTGATATTTCTAATTAGCAGA  239
        ||||||   | |||| ||||||| ||||||||||||   |||||||||
seq2  CCCACACTGTGGGGAATAAGACACTAAGACTGATATTTTCTATTAGCAGA  239

seq1  -GCATTAAAAAAAATTAAGTG-TATGTAAGCAATTTT-GAAT-ATAGA--  283
       |||||||||||||||||||| | ||||||||||||| |||| |||||  
seq2  GGCATTAAAAAAAATTAAGTGTTTTGTAAGCAATTTTGGAATAATAGAAG  289

seq1  GAAAAGTTGTAAAAACAGAACAAGGGTCTTTTTCTCATGTATATGAGAAT  333
       ||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  AAAAAGTTGT-AAAACAGAACAAGGGTC-TTTTCTCATGTATATGAGAAT  337

seq1  AAAAGGATCACTCCACGTACACAAATTAATGTTTATTAAAAATGAAGACA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATCACTCCACGTACACAAATTAATGTTTATTAAAAATGAAGACA  387

seq1  GTACC-TTATATTACCAAAATCCAAGAATATCAGAAAATGATCACAGATT  432
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTTATATTACCAAAATCCAAGAATATCAGAAAATGATCACAGATT  437

seq1  TATTATTTTCATGTAATTGTACAGATCGTGTGTGTGAAGCAATTATTTAA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTCATGTAATTGTACAGATCGTGTGTGTGAAGCAATTATTTAA  487

seq1  ATAATCTTTAGAACAAAAAGACCCAGTTCCAAGTCAAGTGTTGGAATAAG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTTTAGAACAAAAAGACCCAGTTCCAAGTCAAGTGTTGGAATAAG  537

seq1  TTGCTCCATCTGTTTGTGCTTCTCTCATGTCTCTAAGTTCTCCTTGAAAC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCATCTGTTTGTGCTTCTCTCATGTCTCTAAGTTCTCCTTGAAAC  587

seq1  CATTGTCCCAATCCTGTTGAAGATGCAGATCCTGTGTTTTTGAGAACGTC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCCAATCCTGTTGAAGATGCAGATCCTGTGTTTTTGAGAACGTC  637

seq1  CTCTGTATGAGTACAGCTTGTCTTACTCATGGTGCATTTGCTTCTCTCTT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATGAGTACAGCTTGTCTTACTCATGGTGCATTTGCTTCTCTCTT  687

seq1  GAAGAGCCAGAGAAGTGATAATGTGTTTATCCTCTTGAAGTCTAATAGGC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCCAGAGAAGTGATAATGTGTTTATCCTCTTGAAGTCTAATAGGC  737

seq1  CGACACACGATTCCATTTGTCTTATTATTACTGGGACCTCTTACCACTTG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACACGATTCCATTTGTCTTATTATTACTGGGACCTCTTACCACTTG  787

seq1  CTTACGACAGTGTCTGCCAGAATTCTCCTTTAGAGGTTATAACTTTTCCT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGACAGTGTCTGCCAGAATTCTCCTTTAGAGGTTATAACTTTTCCT  837

seq1  CCTGTAGTTGTTACATTCTCAGTGAGAATGTACTGTCAATGAATTC  878
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGTTGTTACATTCTCAGTGAGAATGTACTGTCAATGAATTC  883