BAC Information

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BAC

Clone NameB6Ng01-127O20
Chromosome2 (Build37)
Map Location 101,015,881 - 101,162,574
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127O20.bB6Ng01-127O20.g
ACCDH929913DH929914
length1,070828
definitionDH929913|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O20, 5' end.DH929914|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,161,500 - 101,162,574)(101,015,881 - 101,016,712)
sequence
gaattctctgagatgattgttctttttatgggcagagaaactgaggtttg
aggaaaaaaaatatctctgttagaggagagagggttaggcttttttggtt
ccagagcttatcatctttactactatctatctgcttcctttgaacactta
aaaatatattcaaatctattttctcatttgatactatgcacatctcatta
agggaatggaaagtaacagtagctcttgttttttggattttttaaaattt
catcctttgctctgggaaattgctcaggggcaagcagtgtatttgactga
ctctcctacatatatttgccttatggacaaggagactgtgaaaaccccag
taatgatggtgtggatggtttcaaggtgacagcattcggcccacaaggca
cgactccaaatgcagcagactccatacagccagcacccttcatataatat
gagacatttgttctgtatgttttcataaagtatctggaaccctcatagtc
ctgtgtcccagaatgggatttcacatggcttgctgaaaatcagatgtgtt
cagatgctccaatctagcacatgggacacaatccagacactagtgattaa
aaagacttgctaaggaactggaagtggtgatttcggggactcttgggctc
ctgtatgtgtcagtattgctgtgtgaatctctgctactctcccaggggtc
agtgacttccaactagctgtgtaaaccaccatcttggaaatgtcaggaaa
aaaaataaactaagtcagttttggaggggacatattaaaagacagcactt
gtagtaaaattagaaaaacatcagctgttttgtatgaagtctccaacagt
attgccttttggcaatcaagagcaacaaaaacaaaaactataaaaaccag
tcttttatatacagggaacagagcatgtgacagtttatgatctttcccat
agactgttacgggctcttgattcatatatcacacagttcataaattgatt
tacgaacccataatatcagatgtctttctgttaatctcttcagccttttt
aatatttatgtgatgtactt
gaattctatgtctatgtactagaatggtcattctgaagcactagagattc
actcacgatcactcagattacatacatagagttttgtgtgtgtgcagttt
gataccagacatatatttgggtggtttatttaagccagtagagtgatatt
tttatttgttagctaattagaataaagcagttctatttttgtaagttgag
tttagcagactagcctttaaaaatatgttcaattgcactttggtgacagg
gtaagaaaatatgtgaagaaaaacccccttggtgccttgattcaaacaca
gcatggtggtgagcctggactctgcctgttcactccctagtgcctctgcg
tccttctaacatgactcgcttgcatggggcagcatagttagtggggctat
agcaaattatttcccttcttctacatcattcataataccctaatagtttg
agctttctgacaaagcatcttcttttgagagtagtctgggttaagaagag
aaatgctctgacatatttcagtgtggctatttgtccctgtgagtctatgt
gacttctattcagatgtacaaacttattctcctctgacatttactgctaa
atcctggtatatctcctagtgccgataccctatgactgtagccatctgag
cttctcaactctcaaaatatctgcatggagcctacagacatttttgaatt
tgaatttagagtttctaccccaaaactgcttccaggagagatttctattc
cataaatcatagtattttttgcctatctcccttttgggttaactatcttt
ccctggccatgtgatttcagttatgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101161500_101162574
seq2: B6Ng01-127O20.b_50_1119 (reverse)

seq1  AAGTACATCACATAAATATTAAAAAGGCTGAAGAGATTAACAGAATAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGTACATCACATAAATATTAAAAAGGCTGAAGAGATTAACAGAA-AGAC  49

seq1  ATCTGATATTATGGGTTTCGTAAATCAATTTATGAACTGTGTGATATATG  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  ATCTGATATTATGGG-TTCGTAAATCAATTTATGAACTGTGTGATATAT-  97

seq1  GAATCAAGAGCCCGTAACAGTCTTATGGGAAAGATCATAAACCTGTCACA  150
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GAATCAAGAGCCCGTAACAGTC-TATGGGAAAGATCATAAA-CTGTCACA  145

seq1  TGCTCTGTTCCCTGTATATAAAAGACTGGTTTTTATAGTTTTTGTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTTCCCTGTATATAAAAGACTGGTTTTTATAGTTTTTGTTTTTG  195

seq1  TTGCTCTTGATTGCCAAAAGGCAATACTGTTGGAGACTTCATACAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTGATTGCCAAAAGGCAATACTGTTGGAGACTTCATACAAAACA  245

seq1  GCTGATGTTTTTCTAATTTTACTACAAGTGCTGTCTTTTAATATGTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTTTTTCTAATTTTACTACAAGTGCTGTCTTTTAATATGTCCCC  295

seq1  TCCAAAACTGACTTAGTTTATTTTTTTTCCTGACATTTCCAAGATGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACTGACTTAGTTTATTTTTTTTCCTGACATTTCCAAGATGGTGG  345

seq1  TTTACACAGCTAGTTGGAAGTCACTGACCCCTGGGAGAGTAGCAGAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAGCTAGTTGGAAGTCACTGACCCCTGGGAGAGTAGCAGAGATT  395

seq1  CACACAGCAATACTGACACATACAGGAGCCCAAGAGTCCCCGAAATCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCAATACTGACACATACAGGAGCCCAAGAGTCCCCGAAATCACC  445

seq1  ACTTCCAGTTCCTTAGCAAGTCTTTTTAATCACTAGTGTCTGGATTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGTTCCTTAGCAAGTCTTTTTAATCACTAGTGTCTGGATTGTGT  495

seq1  CCCATGTGCTAGATTGGAGCATCTGAACACATCTGATTTTCAGCAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGCTAGATTGGAGCATCTGAACACATCTGATTTTCAGCAAGCCA  545

seq1  TGTGAAATCCCATTCTGGGACACAGGACTATGAGGGTTCCAGATACTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATCCCATTCTGGGACACAGGACTATGAGGGTTCCAGATACTTTA  595

seq1  TGAAAACATACAGAACAAATGTCTCATATTATATGAAGGGTGCTGGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACATACAGAACAAATGTCTCATATTATATGAAGGGTGCTGGCTGT  645

seq1  ATGGAGTCTGCTGCATTTGGAGTCGTGCCTTGTGGGCCGAATGCTGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTCTGCTGCATTTGGAGTCGTGCCTTGTGGGCCGAATGCTGTCAC  695

seq1  CTTGAAACCATCCACACCATCATTACTGGGGTTTTCACAGTCTCCTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAACCATCCACACCATCATTACTGGGGTTTTCACAGTCTCCTTGTC  745

seq1  CATAAGGCAAATATATGTAGGAGAGTCAGTCAAATACACTGCTTGCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCAAATATATGTAGGAGAGTCAGTCAAATACACTGCTTGCCCCT  795

seq1  GAGCAATTTCCCAGAGCAAAGGATGAAATTTTAAAAAATCCAAAAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATTTCCCAGAGCAAAGGATGAAATTTTAAAAAATCCAAAAAACAA  845

seq1  GAGCTACTGTTACTTTCCATTCCCTTAATGAGATGTGCATAGTATCAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACTGTTACTTTCCATTCCCTTAATGAGATGTGCATAGTATCAAAT  895

seq1  GAGAAAATAGATTTGAATATATTTTTAAGTGTTCAAAGGAAGCAGATAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATAGATTTGAATATATTTTTAAGTGTTCAAAGGAAGCAGATAGA  945

seq1  TAGTAGTAAAGATGATAAGCTCTGGAACCAAAAAAGCCTAACCCTCTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTAAAGATGATAAGCTCTGGAACCAAAAAAGCCTAACCCTCTCTC  995

seq1  CTCTAACAGAGATATTTTTTTTCCTCAAACCTCAGTTTCTCTGCCCATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACAGAGATATTTTTTTTCCTCAAACCTCAGTTTCTCTGCCCATAA  1045

seq1  AAAGAACAATCATCTCAGAGAATTC  1075
      |||||||||||||||||||||||||
seq2  AAAGAACAATCATCTCAGAGAATTC  1070

seq1: chr2_101015881_101016712
seq2: B6Ng01-127O20.g_70_897

seq1  GAATTCTATGTCTATGTACTAGAATGGTCATTCTGAAGCACTAGAGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTCTATGTACTAGAATGGTCATTCTGAAGCACTAGAGATTC  50

seq1  ACTCACGATCACTCAGATTACATACATAGAGTTTTGTGTGTGTGCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACGATCACTCAGATTACATACATAGAGTTTTGTGTGTGTGCAGTTT  100

seq1  GATACCAGACATATATTTGGGTGGTTTATTTAAGCCAGTAGAGTGATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGACATATATTTGGGTGGTTTATTTAAGCCAGTAGAGTGATATT  150

seq1  TTTATTTGTTAGCTAATTAGAATAAAGCAGTTCTATTTTTGTAAGTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTTAGCTAATTAGAATAAAGCAGTTCTATTTTTGTAAGTTGAG  200

seq1  TTTAGCAGACTAGCCTTTAAAAATATGTTCAATTGCACTTTGGTGACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGACTAGCCTTTAAAAATATGTTCAATTGCACTTTGGTGACAGG  250

seq1  GTAAGAAAATATGTGAAGAAAAACCCCCTTGGTGCCTTGATTCAAACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAATATGTGAAGAAAAACCCCCTTGGTGCCTTGATTCAAACACA  300

seq1  GCATGGTGGTGAGCCTGGACTCTGCCTGTTCACTCCCTAGTGCCTCTGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGGTGAGCCTGGACTCTGCCTGTTCACTCCCTAGTGCCTCTGCG  350

seq1  TCCTTCTAACATGACTCGCTTGCATGGGGCAGCATAGTTAGTGGGGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAACATGACTCGCTTGCATGGGGCAGCATAGTTAGTGGGGCTAT  400

seq1  AGCAAATTATTTCCCTTCTTCTACATCATTCATAATACCCTAATAGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTATTTCCCTTCTTCTACATCATTCATAATACCCTAATAGTTTG  450

seq1  AGCTTTCTGACAAAGCATCTTCTTTTGAGAGTAGTCTGGGTTAAGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTGACAAAGCATCTTCTTTTGAGAGTAGTCTGGGTTAAGAAGAG  500

seq1  AAATGCTCTGACATATTTCAGTGTGGCTATTTGTCCCTGTGAGTCTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCTGACATATTTCAGTGTGGCTATTTGTCCCTGTGAGTCTATGT  550

seq1  GACTTCTATTCAGATGTACAAACTTATTCTCCTCTGACATTTACTGCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTATTCAGATGTACAAACTTATTCTCCTCTGACATTTACTGCTAA  600

seq1  ATCCTGGTATATCTCCTAGTGCCGATACCCTATGACTGTAGCCATCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGTATATCTCCTAGTGCCGATACCCTATGACTGTAGCCATCTGAG  650

seq1  CTTCTCAACTCTCAAAATATCTGCATGGAGCCTACAGACATTTTTGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAACTCTCAAAATATCTGCATGGAGCCTACAGACATTTTTGAATT  700

seq1  TGAATTTAGAGTTTCTACCCCAAAACTGCTTCCAGGAGAGATTTCTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTAGAGTTTCTACCCCAAAACTGCTTCCAGGAGAGATTTCTATTC  750

seq1  CATAAATCATAGTATTTTTTGCCTATCTCCCTTTTGGGTTAACTATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATCATAGTATTTTTTGCCTATCTCCCTTTTGGGTTAACTATCTTT  800

seq1  CCCTGGCATTGTTGATTTTTCAGTTTATGCTG  832
      |||||||  || |||  |||||| ||||||||
seq2  CCCTGGCCATG-TGA--TTTCAG-TTATGCTG  828