BAC Information

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BAC

Clone NameB6Ng01-128F17
Chromosome2 (Build37)
Map Location 20,859,781 - 20,996,760
singlet/doubletdoublet
Overlap geneArhgap21, LOC433408, LOC675912
Upstream geneLOC100041302, LOC433406, LOC654360, LOC667609, Etl4
Downstream geneC130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158, LOC637235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128F17.bB6Ng01-128F17.g
ACCDH930229DH930230
length1671,059
definitionDH930229|Mus musculus domesticus DNA, BAC clone: B6Ng01-128F17, 5' end.DH930230|Mus musculus domesticus DNA, BAC clone: B6Ng01-128F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,859,781 - 20,859,947)(20,995,690 - 20,996,760)
sequence
actctgggctgcaagtgatctgccccacctaatacaggctagaaacaagg
ccaagaagaaagaggaagggccttttatttcccaagaactaaagaccctt
gccaatccccactggcttatgacaagttagctgtggagagtagttgtagg
gatgggagagggagagg
gaattctccttcgcctcggacgtgtcactccttgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacaatccctga
tcttatgtttctatccaagaagcctgctttggactacttgtgatccctgt
gctgatatctgagagtggccatgttaatgctattagtggccagagttact
cattcttcaggatgagataggattggatctcttcagattttaagagtcca
aaccagttttaaacattccattcctctggcttatagcccttcccccaaat
ctcccagtccctaataacatgagttccatcatgtgttgtaaaaggaggca
cctacagagtaatgaattcgcatcttccaggttccagcgggtgataggaa
tcaggaggcatagcctctgctgtgccagaagctgctggctgctgagctag
ctaatgcccaggaatgatgtcaggtgagtctatgaagatctacggggctg
tgccctccatctacctgcaactcatggagcagaccaccattctgatcaca
gcaaccagaacagacagggagtccattcacagccaagagctcctgggcca
gttcctcctagaggtctcgacctccatggcagtgatgaaaacctacctgg
acattctagtgtgccagagccaccgcccctagtggttaggttatcttagt
gtggcacctcactggcatcttcctctgcaggtggctctgtgctcggggtg
cagatagtcacctatgtcactgtgattaaacaaagacaccaactacacaa
aatgacggaacaacttcagggagaaagactggcttgaactcatgtttaca
gagagatgcaactatttcattagtgttgggagcatgtattgagttgctca
catcacagtgagtagactaagttgtaaaaggaccaggggcaggtatcacc
tttaatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_20859781_20859947
seq2: B6Ng01-128F17.b_57_223

seq1  ACTCTGGGCTGCAAGTGATCTGCCCCACCTAATACAGGCTAGAAACAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGCTGCAAGTGATCTGCCCCACCTAATACAGGCTAGAAACAAGG  50

seq1  CCAAGAAGAAAGAGGAAGGGCCTTTTATTTCCCAAGAACTAAAGACCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGAAAGAGGAAGGGCCTTTTATTTCCCAAGAACTAAAGACCCTT  100

seq1  GCCAATCCCCACTGGCTTATGACAAGTTAGCTGTGGAGAGTAGTTGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCCCCACTGGCTTATGACAAGTTAGCTGTGGAGAGTAGTTGTAGG  150

seq1  GATGGGAGAGGGAGAGG  167
      |||||||||||||||||
seq2  GATGGGAGAGGGAGAGG  167

seq1: chr2_20995690_20996760
seq2: B6Ng01-128F17.g_68_1126 (reverse)

seq1  GGCATT-AAGGTGATACTTGCCCCCTGGTTCCTTTTACACTTTAGTTCCT  49
      |||||| |||||||||| || ||||||| ||||||||||  |||||  ||
seq2  GGCATTAAAGGTGATACCTG-CCCCTGG-TCCTTTTACAACTTAGT--CT  46

seq1  ACTCCACTGTGATGTGAGCAACTCATTACATGCTCCCACCACT-ATGAAA  98
      ||| ||||||||||||||||||||| |||||||||||| |||| ||||||
seq2  ACT-CACTGTGATGTGAGCAACTCAATACATGCTCCCAACACTAATGAAA  95

seq1  TAAGTTGCCTTCTCCTTCTGTAAACATGAGTTCAAGCCAGTCTTTCCTCC  148
      | ||||| | ||||  ||||||||||||||||||||||||||||| ||||
seq2  T-AGTTG-CATCTC--TCTGTAAACATGAGTTCAAGCCAGTCTTT-CTCC  140

seq1  CTGAAGTTGTTTCCGTCATTTTGTTGTAGTTGGTGTCTTTGTTTTAATCA  198
      ||||||||| ||||||||||||| ||||||||||||||||| ||||||||
seq2  CTGAAGTTG-TTCCGTCATTTTG-TGTAGTTGGTGTCTTTG-TTTAATCA  187

seq1  CAGTGACATAGGTGACTAATCTGCACCCCGAGCACAGAGCCACCTGCAGA  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGTGACATAGGTGACT-ATCTGCACCCCGAGCACAGAGCCACCTGCAGA  236

seq1  GGAAGATGCCAGTGAGGTGCCACACTAAGATAACCTAACCACTAGGGGCG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGCCAGTGAGGTGCCACACTAAGATAACCTAACCACTAGGGGCG  286

seq1  GTGGCTCTGGCACACTAGAATGTCCAGGTAGGTTTTCATCACTGCCATGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTGGCACACTAGAATGTCCAGGTAGGTTTTCATCACTGCCATGG  336

seq1  AGGTCGAGACCTCTAGGAGGAACTGGCCCAGGAGCTCTTGGCTGTGAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGAGACCTCTAGGAGGAACTGGCCCAGGAGCTCTTGGCTGTGAATG  386

seq1  GACTCCCTGTCTGTTCTGGTTGCTGTGATCAGAATGGTGGTCTGCTCCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTGTCTGTTCTGGTTGCTGTGATCAGAATGGTGGTCTGCTCCAT  436

seq1  GAGTTGCAGGTAGATGGAGGGCACAGCCCCGTAGATCTTCATAGACTCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCAGGTAGATGGAGGGCACAGCCCCGTAGATCTTCATAGACTCAC  486

seq1  CTGACATCATTCCTGGGCATTAGCTAGCTCAGCAGCCAGCAGCTTCTGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATCATTCCTGGGCATTAGCTAGCTCAGCAGCCAGCAGCTTCTGGC  536

seq1  ACAGCAGAGGCTATGCCTCCTGATTCCTATCACCCGCTGGAACCTGGAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGAGGCTATGCCTCCTGATTCCTATCACCCGCTGGAACCTGGAAG  586

seq1  ATGCGAATTCATTACTCTGTAGGTGCCTCCTTTTACAACACATGATGGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAATTCATTACTCTGTAGGTGCCTCCTTTTACAACACATGATGGAA  636

seq1  CTCATGTTATTAGGGACTGGGAGATTTGGGGGAAGGGCTATAAGCCAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTATTAGGGACTGGGAGATTTGGGGGAAGGGCTATAAGCCAGAG  686

seq1  GAATGGAATGTTTAAAACTGGTTTGGACTCTTAAAATCTGAAGAGATCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAATGTTTAAAACTGGTTTGGACTCTTAAAATCTGAAGAGATCCA  736

seq1  ATCCTATCTCATCCTGAAGAATGAGTAACTCTGGCCACTAATAGCATTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATCTCATCCTGAAGAATGAGTAACTCTGGCCACTAATAGCATTAA  786

seq1  CATGGCCACTCTCAGATATCAGCACAGGGATCACAAGTAGTCCAAAGCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCACTCTCAGATATCAGCACAGGGATCACAAGTAGTCCAAAGCAG  836

seq1  GCTTCTTGGATAGAAACATAAGATCAGGGATTGTTGGGAGCCGCGCCCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGGATAGAAACATAAGATCAGGGATTGTTGGGAGCCGCGCCCAC  886

seq1  ATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAA  936

seq1  ATAATCTGCGCATGTGCCAAGGGTATCTTATGACTACTTGTGCTCTGCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGCGCATGTGCCAAGGGTATCTTATGACTACTTGTGCTCTGCCT  986

seq1  TCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAAGGAGTGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAAGGAGTGAC  1036

seq1  ACGTCCGAGGCGAAGGAGAATTC  1071
      |||||||||||||||||||||||
seq2  ACGTCCGAGGCGAAGGAGAATTC  1059