BAC Information

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BAC

Clone NameB6Ng01-128I04
Chromosome2 (Build37)
Map Location 40,345,870 - 40,505,511
singlet/doubletdoublet
Overlap geneLOC666531, Lrp1b
Upstream genePpia-ps2_560.1, LOC100042604, Magmas-ps
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128I04.bB6Ng01-128I04.g
ACCDH930341DH930342
length1,124959
definitionDH930341|Mus musculus domesticus DNA, BAC clone: B6Ng01-128I04, 5' end.DH930342|Mus musculus domesticus DNA, BAC clone: B6Ng01-128I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,345,870 - 40,347,014)(40,504,547 - 40,505,511)
sequence
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccagttcggaatcttcct
gagaagcaagcaataaagcttttgccgtggaagattctggtttgttgtgt
ctttcttgccggtcgagcgagacgcaataaataataatctcacaatagag
agaagtacaagctcctggaagaaaatataagatctcctccaaagaagatg
aagagacagagaagatctctacctgaaacttgctttaaatatgacaaaga
tggacactagatttaaaactacccttctcctcacccactgccaagatcct
gtccaaactatggagaagcagaacactggggagtttattgttctactttg
cctagattaggtaggccagtttaccaagatcctactccacaggatagtct
gtcggattttctggttctgtggaacaatgattgaaagtgcgcagggacta
ttgcttggtagtattgtagacacaggacagtctacacttcctgcttactc
cactgacatttattcttttctaattggttgattactaggctagtgatagg
tttatcattttaatagcagaaaacagggctttgtataacttcgcaatcct
cttcatatgtaaaaatcaaacctctgggatcaatgtgttagaagtactcc
taggtcttgacacagtaaactttgctatcagacttaatgatttaatgtaa
catttactatttctttacttaaaggaattcacttcacaatgactgttctc
agtaatcaatgacatgtctcatggtaagtaactggattgaaaaaaagtgt
atccagtctaatatcaaaaattaagtgacagctgatattggcaggaagtg
aggatggggacactcaactattgacagtggacgtgcaacttgtacaacac
tttgaatcattgggatttttctcagaaattggaagaatcacttcacaaca
gctatactactctgggcattactgtactgcctagttttggttcaacttga
cacagctggcttatccagagaaag
gaattcagcttcaaagtcattgccaacttgctttatccatgtcctctagc
tcaaatatttgaggtcttcagcatgtagtattactatcgaattctcagga
aaaccatgatcaatggctatagcctgtaacgtttgtgaaaatgctgtcta
taagacaaaaaagaaagcatagagttgggattctgttcttgtggctgtct
tcttttaggtttgttgaaggattaattgggaacaaaacacccatggaagg
agttaaagagacaaagtttagagctgagtcgaaaggatggaccattcaga
gactgccccacccggggatccatcctataatcagccaccaaacacagaca
ctatggcatatgctaccaagattttccttaaaggaccctgatatagctgt
ctcttgtgaggctatgccagtgtctggcaaacacagaagtggatgctcac
agtcagctattggatggaacacagggcccccagtggaggagctagagaaa
gtacccaaggagctgaaggggtctgcaaccctataggtggaataataata
ttaactaaccagtacccccagagctcgtgtctctagctgcatatgtagca
gaagatggcctagttggccatcattgggaagagaggccccttggtctagc
atactttatatgccccagtacaggggaaacaccagggccaagaagtggga
gtagatgggtaggggagcagtggtctgggtgtatagtggactttcagggt
agcatttgaaatgtaaataaagtaaatacctaataaaatattgggaaaaa
aagataaaaatgcccagaaagttaaatagaattttcccatcatagtattt
gtatgtaatttttatggtgccatgaatttttctatgctcttgggcttctt
tgttcactgctacttatggcttgagctattatcattactctggcatgaat
atttctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40345870_40347014
seq2: B6Ng01-128I04.b_49_1172

seq1  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50

seq1  GGCAAGCAACGAATCGGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAACGAATCGGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100

seq1  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCAGTTCGGAATCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCAGTTCGGAATCTTCCT  150

seq1  GAGAAGCAAGCAATAAAGCTTTTGCCGTGGAAGATTCTGGTTTGTTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGCAATAAAGCTTTTGCCGTGGAAGATTCTGGTTTGTTGTGT  200

seq1  CTTTCTTGCCGGTCGAGCGAGACGCAATAAATAATAATCTCACAATAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGCCGGTCGAGCGAGACGCAATAAATAATAATCTCACAATAGAG  250

seq1  AGAAGTACAAGCTCCTGGAAGAAAATATAAGATCTCCTCCAAAGAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACAAGCTCCTGGAAGAAAATATAAGATCTCCTCCAAAGAAGATG  300

seq1  AAGAGACAGAGAAGATCTCTACCTGAAACTTGCTTTAAATATGACAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAGAGAAGATCTCTACCTGAAACTTGCTTTAAATATGACAAAGA  350

seq1  TGGACACTAGATTTAAAACTACCCTTCTCCTCACCCACTGCCAAGATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTAGATTTAAAACTACCCTTCTCCTCACCCACTGCCAAGATCCT  400

seq1  GTCCAAACTATGGAGAAGCAGAACACTGGGGAGTTTATTGTTCTACTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAACTATGGAGAAGCAGAACACTGGGGAGTTTATTGTTCTACTTTG  450

seq1  CCTAGATTAGGTAGGCCAGTTTACCAAGATCCTACTCCACAGGATAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATTAGGTAGGCCAGTTTACCAAGATCCTACTCCACAGGATAGTCT  500

seq1  GTCGGATTTTCTGGTTCTGTGGAACAATGATTGAAAGTGCGCAGGGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGATTTTCTGGTTCTGTGGAACAATGATTGAAAGTGCGCAGGGACTA  550

seq1  TTGCTTGGTAGTATTGTAGACACAGGACAGTCTACACTTCCTGCTTACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGGTAGTATTGTAGACACAGGACAGTCTACACTTCCTGCTTACTC  600

seq1  CACTGACATTTATTCTTTTCTAATTGGTTGATTACTAGGCTAGTGATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACATTTATTCTTTTCTAATTGGTTGATTACTAGGCTAGTGATAGG  650

seq1  TTTATCATTTTAATAGCAGAAAACAGGGCTTTGTATAACTTCGCAATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATTTTAATAGCAGAAAACAGGGCTTTGTATAACTTCGCAATCCT  700

seq1  CTTCATATGTAAAAATCAAACCTCTGGGATCAATGTGTTAGAAGTACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATGTAAAAATCAAACCTCTGGGATCAATGTGTTAGAAGTACTCC  750

seq1  TAGGTCTTGACACAGTAAACTTTGCTATCAGACTTAATGATTTAATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTGACACAGTAAACTTTGCTATCAGACTTAATGATTTAATGTAA  800

seq1  CATTTACTATTTCTTTACTTAAAGGAATTCACTTCACAATGACTGTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTATTTCTTTACTTAAAGGAATTCACTTCACAATGACTGTTCTC  850

seq1  AGTAATCAATGACATGTCTCATGGTAAGTAACTGGATTGAAAAAAAAGTG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTAATCAATGACATGTCTCATGGTAAGTAACTGGATTG-AAAAAAAGTG  899

seq1  TATCCAGTCTAATATCAAAAATTAAGTGACAGCTGATATTGGCAAGGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATCCAGTCTAATATCAAAAATTAAGTGACAGCTGATATTGGC-AGGAAG  948

seq1  TGGAGGAAGGGGAACACTCAACTATTGACAGTGGACGTGCAAACTTGTAC  1000
      | ||||| |||| ||||||||||||||||||||||||||| |||||||||
seq2  T-GAGGATGGGG-ACACTCAACTATTGACAGTGGACGTGC-AACTTGTAC  995

seq1  AAACACTTTGGAAATCAATTTGGGATTTTTCTCAGAAAATTGGGAAGAAA  1050
       |||||||||  |||||  |||||||||||||||||||  | ||||||| 
seq2  -AACACTTTG--AATCA--TTGGGATTTTTCTCAGAAA--TTGGAAGAA-  1037

seq1  TCCACTTCACAAACCAGCTATACTACTTCTGGGCATATACCTGTACTGGC  1100
        ||||||||||  |||||||||||| ||||||||| || |||||||| |
seq2  -TCACTTCACAA--CAGCTATACTAC-TCTGGGCAT-TA-CTGTACTGCC  1081

seq1  TAGTTTTGTGTCAACTTGACACAGCTGGGGTTATCACAGAGAAAG  1145
      ||||||||  |||||||||||||||| || ||||| |||||||||
seq2  TAGTTTTGGTTCAACTTGACACAGCT-GGCTTATC-CAGAGAAAG  1124

seq1: chr2_40504547_40505511
seq2: B6Ng01-128I04.g_67_1025 (reverse)

seq1  AAGAGAAATAATTCATGCCAAGAGTAATGAAAATTAGCTCAAGCCAATAA  50
      ||||||||| ||||||||| |||||||||| || ||||||||||| ||||
seq2  AAGAGAAAT-ATTCATGCC-AGAGTAATGATAA-TAGCTCAAGCC-ATAA  46

seq1  GTAGCAGTGAACAAAGAAGCCCAAGAGCATTAGAAAATTCATGGCACCAT  100
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  GTAGCAGTGAACAAAGAAGCCCAAGAGCATAGAAAAATTCATGGCACCAT  96

seq1  AAAAAATAACATACAAATACTAATGATGGGAAAATTCTATTTAACTTTCT  150
       |||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  -AAAAATTACATACAAATACT-ATGATGGGAAAATTCTATTTAACTTTCT  144

seq1  GGGCATTTTTATCTTTTTTTCCCAATATTTTATTAGGTATTTACTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTTTTATCTTTTTTTCCCAATATTTTATTAGGTATTTACTTTATT  194

seq1  TACATTTCAAATGCTACCCTGAAAGTCCACTATACACCCAGACCACTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCAAATGCTACCCTGAAAGTCCACTATACACCCAGACCACTGCT  244

seq1  CCCCTACCCATCTACTCCCACTTCTTGGCCCTGGTGTTTCCCCTGTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCCATCTACTCCCACTTCTTGGCCCTGGTGTTTCCCCTGTACTG  294

seq1  GGGCATATAAAGTATGCTAGACCAAGGGGCCTCTCTTCCCAATGATGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATAAAGTATGCTAGACCAAGGGGCCTCTCTTCCCAATGATGGCC  344

seq1  AACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGGGG  394

seq1  GTACTGGTTAGTTAATATTATTATTCCACCTATAGGGTTGCAGACCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTTAGTTAATATTATTATTCCACCTATAGGGTTGCAGACCCCTT  444

seq1  CAGCTCCTTGGGTACTTTCTCTAGCTCCTCCACTGGGGGCCCTGTGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTTGGGTACTTTCTCTAGCTCCTCCACTGGGGGCCCTGTGTTCC  494

seq1  ATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGACACTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGACACTGGC  544

seq1  ATAGCCTCACAAGAGACAGCTATATCAGGGTCCTTTAAGGAAAATCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCACAAGAGACAGCTATATCAGGGTCCTTTAAGGAAAATCTTGG  594

seq1  TAGCATATGCCATAGTGTCTGTGTTTGGTGGCTGATTATAGGATGGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATGCCATAGTGTCTGTGTTTGGTGGCTGATTATAGGATGGATCC  644

seq1  CCGGGTGGGGCAGTCTCTGAATGGTCCATCCTTTCGACTCAGCTCTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTGGGGCAGTCTCTGAATGGTCCATCCTTTCGACTCAGCTCTAAAC  694

seq1  TTTGTCTCTTTAACTCCTTCCATGGGTGTTTTGTTCCCAATTAATCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCTTTAACTCCTTCCATGGGTGTTTTGTTCCCAATTAATCCTTC  744

seq1  AACAAACCTAAAAGAAGACAGCCACAAGAACAGAATCCCAACTCTATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCTAAAAGAAGACAGCCACAAGAACAGAATCCCAACTCTATGCT  794

seq1  TTCTTTTTTGTCTTATAGACAGCATTTTCACAAACGTTACAGGCTATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTGTCTTATAGACAGCATTTTCACAAACGTTACAGGCTATAGC  844

seq1  CATTGATCATGGTTTTCCTGAGAATTCGATAGTAATACTACATGCTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATCATGGTTTTCCTGAGAATTCGATAGTAATACTACATGCTGAAG  894

seq1  ACCTCAAATATTTGAGCTAGAGGACATGGATAAAGCAAGTTGGCAATGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAATATTTGAGCTAGAGGACATGGATAAAGCAAGTTGGCAATGAC  944

seq1  TTTGAAGCTGAATTC  965
      |||||||||||||||
seq2  TTTGAAGCTGAATTC  959