BAC Information

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BAC

Clone NameB6Ng01-128L23
Chromosome2 (Build37)
Map Location 30,019,496 - 30,148,623
singlet/doubletdoublet
Overlap geneEndog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188
Upstream geneSetx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps
Downstream geneSh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128L23.bB6Ng01-128L23.g
ACCDH930516DH930517
length997768
definitionDH930516|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L23, 5' end.DH930517|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,148,076 - 30,148,623)(30,019,496 - 30,020,259)
sequence
gaattctttttttcttcttgggtttgtgtgtatatatgtgtgtttgtgac
atttatttttctctttagtgacatgtactgggttttgccttcatgtaagt
ctatgcgccacttgaatgcaacccaaggaagcctggagcaagtgttagat
cccctggaaatctagttacaaaagttacgagcagggctggaaagatattt
tggtggttcaattcccagcacccacatggcagctcacaactgttcgtaac
tccagttccaggggatctgacaccctcatacctatgtacataaaataaaa
ctaagaaaaaaaaaggttatgaacatccgtgaagatgctagaaatcaatc
aaatctgggtcctctgggacagccagtgttcttaagccactgagtgatca
ctcactgaataaatccgtgtgtgaaggatttacctaaaggtctcaacacc
attaaccaccactggtccacaccccagccacaaagtgaaatttttatcta
tctatctatctatctatctatctatctatctatctatttttaagaagcca
agattttgacaagcaagaaggctcagcaggaaaggaacttgtttctaaac
ccgatgacctaaatttgatctctggaacccacatggtaaaaccaaattct
gcaagttgtcttctgacttccacacacctgaggtggaacatgtctacaca
cacctctatgaagcagacactattattatagtatcaggaaatagaggact
cagaggctaataactggcctaaagtcacgggataacacacagtgcaagca
ggtgtacactagccatgcctgagctgggccaccacaatactcaagttgca
atcaagattcattttcagagcgtggagagagaactcagcggtcaaggact
ggctgttcttacaggggttctcagttcaattcccagcaaccacaggtggc
tcacaacctctgtaatgggatctgatgcctcttctggcacgcatgaa
gaattctctggggtcccatgtttgaagaacaatgcatctttttcagtatg
cttatacccattttctctagtacaattagtttgtagtcagctgatctcca
tcatctcttatgacactgatacatgggcaggcttttggccaagatcccat
cttctgtctggtcagagggtgtgggatctcctggatctagtgcagtcaag
gaaatgaggggcccaattttctaggattacccactgggctgtcttgttgc
tctttgggatggagtttagttcttccttctgccttcagagggcctctctc
tatataaaaattaccctagatgtgagcagtagcaaaggcaccaaccatct
gtgtctcttgtcttttctcaactctattgccttggtcaaagctgccagtt
cagctttctgttctgacattcctgccaggagtggttctgcccatatgatc
ttggtgtctgagaccatcactgccccagcatatctctgtccatcctgaat
gaggcagttgccattggtgaaccatgttacctctgcatccatctgagcag
tcatgcagaagcccatcaatcaagctcagggtcaggcagcagggcagctg
aaacgttatcctgggggcattcgagaagagagggatggtaaggagtcatt
ctggcatcatcttttaaccagaaggctgcacaaacggggggtgggagggc
agcttctggcaagtggtatcagattggctattggctgatgtcagggcccc
gagtctgggttatgcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_30148076_30148623
seq2: B6Ng01-128L23.b_49_596 (reverse)

seq1  GCTTCTTAAAAATAGATAGATAGATAGATAGATAGATAGATAGATAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTAAAAATAGATAGATAGATAGATAGATAGATAGATAGATAGATA  50

seq1  GATAAAAATTTCACTTTGTGGCTGGGGTGTGGACCAGTGGTGGTTAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAATTTCACTTTGTGGCTGGGGTGTGGACCAGTGGTGGTTAATGG  100

seq1  TGTTGAGACCTTTAGGTAAATCCTTCACACACGGATTTATTCAGTGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGACCTTTAGGTAAATCCTTCACACACGGATTTATTCAGTGAGTG  150

seq1  ATCACTCAGTGGCTTAAGAACACTGGCTGTCCCAGAGGACCCAGATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCAGTGGCTTAAGAACACTGGCTGTCCCAGAGGACCCAGATTTGA  200

seq1  TTGATTTCTAGCATCTTCACGGATGTTCATAACCTTTTTTTTTCTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTAGCATCTTCACGGATGTTCATAACCTTTTTTTTTCTTAGTT  250

seq1  TTATTTTATGTACATAGGTATGAGGGTGTCAGATCCCCTGGAACTGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATGTACATAGGTATGAGGGTGTCAGATCCCCTGGAACTGGAGT  300

seq1  TACGAACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTGAACCACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTGAACCACCAAA  350

seq1  ATATCTTTCCAGCCCTGCTCGTAACTTTTGTAACTAGATTTCCAGGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTCCAGCCCTGCTCGTAACTTTTGTAACTAGATTTCCAGGGGAT  400

seq1  CTAACACTTGCTCCAGGCTTCCTTGGGTTGCATTCAAGTGGCGCATAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACTTGCTCCAGGCTTCCTTGGGTTGCATTCAAGTGGCGCATAGAC  450

seq1  TTACATGAAGGCAAAACCCAGTACATGTCACTAAAGAGAAAAATAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGAAGGCAAAACCCAGTACATGTCACTAAAGAGAAAAATAAATGT  500

seq1  CACAAACACACATATATACACACAAACCCAAGAAGAAAAAAAGAATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACACACATATATACACACAAACCCAAGAAGAAAAAAAGAATTC  548

seq1: chr2_30019496_30020259
seq2: B6Ng01-128L23.g_69_836

seq1  GAATTCTCTGGGGTCCCATGTTTGAAGAACAATGCATCTTTTTCAGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGGTCCCATGTTTGAAGAACAATGCATCTTTTTCAGTATG  50

seq1  CTTATACCCATTTTCTCTAGTACAATTAGTTTGTAGTCAGCTGATCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACCCATTTTCTCTAGTACAATTAGTTTGTAGTCAGCTGATCTCCA  100

seq1  TCATCTCTTATGACACTGATACATGGGCAGGCTTTTGGCCAAGATCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTTATGACACTGATACATGGGCAGGCTTTTGGCCAAGATCCCAT  150

seq1  CTTCTGTCTGGTCAGAGGGTGTGGGATCTCCTGGATCTAGTGCAGTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCTGGTCAGAGGGTGTGGGATCTCCTGGATCTAGTGCAGTCAAG  200

seq1  GAAATGAGGGGCCCAATTTTCTAGGATTACCCACTGGGCTGTCTTGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGGGGCCCAATTTTCTAGGATTACCCACTGGGCTGTCTTGTTGC  250

seq1  TCTTTGGGATGGAGTTTAGTTCTTCCTTCTGCCTTCAGAGGGCCTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGATGGAGTTTAGTTCTTCCTTCTGCCTTCAGAGGGCCTCTCTC  300

seq1  TATATAAAAATTACCCTAGATGTGAGCAGTAGCAAAGGCACCAACCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAAATTACCCTAGATGTGAGCAGTAGCAAAGGCACCAACCATCT  350

seq1  GTGTCTCTTGTCTTTTCTCAACTCTATTGCCTTGGTCAAAGCTGCCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTTGTCTTTTCTCAACTCTATTGCCTTGGTCAAAGCTGCCAGTT  400

seq1  CAGCTTTCTGTTCTGACATTCCTGCCAGGAGTGGTTCTGCCCATATGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCTGTTCTGACATTCCTGCCAGGAGTGGTTCTGCCCATATGATC  450

seq1  TTGGTGTCTGAGACCATCACTGCCCCAGCATATCTCTGTCCATCCTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTCTGAGACCATCACTGCCCCAGCATATCTCTGTCCATCCTGAAT  500

seq1  GAGGCAGTTGCCATTGGTGAACCATGTTACCTCTGCATCCATCTGAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTTGCCATTGGTGAACCATGTTACCTCTGCATCCATCTGAGCAG  550

seq1  TCATGCAGAAGCCCATCAATCAAGCTCAGGGTCAGGCAGCAGGGCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAGAAGCCCATCAATCAAGCTCAGGGTCAGGCAGCAGGGCAGCTG  600

seq1  AAACGTTATCCTGGGGGCATTCGAGAAGAGA-GGATGGTAAGGAGTCATT  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAACGTTATCCTGGGGGCATTCGAGAAGAGAGGGATGGTAAGGAGTCATT  650

seq1  CTGGCATCATC-TTTAACCAGAAGGCTGCACAAAC-GGGGGTGGGAGGGC  697
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  CTGGCATCATCTTTTAACCAGAAGGCTGCACAAACGGGGGGTGGGAGGGC  700

seq1  AGCTTCTGGCAAGTGGTATCAGATTGGCTATTGGCTGATGTCAGGGCCCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGGCAAGTGGTATCAGATTGGCTATTGGCTGATGTCAGGGCCCC  750

seq1  GAGTCTGGG-TATGCATC  764
      ||||||||| ||||||||
seq2  GAGTCTGGGTTATGCATC  768