BAC Information

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BAC

Clone NameB6Ng01-128N19
Chromosome2 (Build37)
Map Location 67,353,529 - 67,483,196
singlet/doubletdoublet
Overlap geneCmya3
Upstream geneScn9a, Scn7a, LOC383707, LOC100039540, Gm1322
Downstream geneLOC621171, LOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128N19.bB6Ng01-128N19.g
ACCDH930601DH930602
length1,1621,192
definitionDH930601|Mus musculus domesticus DNA, BAC clone: B6Ng01-128N19, 5' end.DH930602|Mus musculus domesticus DNA, BAC clone: B6Ng01-128N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,353,529 - 67,354,692)(67,482,019 - 67,483,196)
sequence
gaattcttgcgaaaacgtgaagaactacagcagattttgtctagggtaaa
acagtttgaagcagagtcaagtaaaagtggccttaaaacgtttcagatac
tgttaaatattgtcccggtatggctgataagtgaggagaaaagagaatat
ggagttcgtgttgccatggagaataatttcgaaaaagtcaaagaagaaat
aacacatattaaaactcaagccgaggagatgcttcttcagtgtgaacatg
taattcagacagccatgatggcttcccaaacaggaaagcagagagataaa
cctaccaaccttaatgaaatgccactgaatgtgtctaatgttaatctcag
ctcgagtaaatgcaccgaacagaaagaaagtaaaactgtagaagaaaaat
taacacaccgacaagtaacaactcatcctgaggcagcaacccgtaatcct
gttaaaccataccaggaggctaagggggaagacggtaagatggctcctcc
ctctttgaaaactcgccctccatcaccaactttcattacaatagagtcca
ctgcccgtagagcagaaacctccacgaagagtgagctttctcagtcccct
aaaaataaccgttgtattgaacctccaccccgaagacccgtggaacatgc
atctggacttcccagatcaagaacaccaccttccccaccaaggagtcgtt
cagaacaacttgtcagactcaaagacaccacggccaggctagccaaaggc
accatcccttgttcaccaggaaccccagttccaattgtagagaagagatc
tgaggttgtcatgtctccagccacactccgcagacaaatcaagatagaaa
gtcgtgggtggggactcaccacccaccatcacaatacctgtgagtgtaaa
ccacgtcgttagtggctccttcagagaatctgtagacgctcaagaggcag
tgaagaaaacagaaaaacggagacttatgttcataagacaaaatggatct
gtcaaagagcaatggcagagactgaaagctacgatgcagtcgaaatcatc
ggcaaggtggagggccccacctatcaggaacacacagaaagagattggag
gccaccaatcaactgttcaaagggctggacgatttctggaatggccatgg
aaatgaataaac
gaattccattatttcttttcttgctcaagagttaaatgctatatgtagag
tctaaataaacttccttccttataatcataaataataccatctagctttt
agagtttctgaagtgcttccacaaaaacattttaggcatttgggaacttt
ttcattatctatggaatgaaaactaaatattggctatttagtcatattcc
tgacaacagatcttgaaattctttgtaaatattgtccatatggtaatgtt
cactttttagtacatgatgtttattaaattttcaaagcaataaaagctgt
gtgacttctgaagaaatttacaacatgatctatacattttattaaataat
tctgaacccattgcatatgagacactcgggatgagatgagcagtggacca
cacacacacttacacatagacagtggaccacacacacacttacacataga
cagtggaccacacacacacttacacatagacagtggaccacacacacact
tacacatagacagtggaccacacacacacttacacatagacagtggacca
cacacacacttacacataaacacatacatgcacacacacacacacacaca
cacacacacacacacacacatcttgtccttaaggcacaaatattcttgtg
gatgcaaatgagaactgagacagatgttgactcacagaagaaatacgtaa
tgttggcttccactgtctgttgtcttcctttattgaacaatttctacatt
ttaccattgcctcaattcctgctgataattttacatacctagaaattttg
taattcatggggtcatcttacagttttctaattgcttcttaccatttgat
caataagatatagtttctaaatgggatgaaatacaaataatcaatatatc
actgcttaattgattgatatttctactccccctcactgcgcttcaatcag
aatgggcctacccttacatttctcactcctccagcagaccaatgcttcta
ttggttagtcactagatggagctcagatctgacttagtccccctccattg
ggaagagtagaattttggccattttttcttccttacaggtacctagtacg
atcagaatctaccaatagatgttgggtgtttaacatgttttctttgagag
aaagatgtaccagaggtgttgaccaccatcatctcaattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_67353529_67354692
seq2: B6Ng01-128N19.b_48_1209

seq1  GAATTCTTGCGAAAACGTGAAGAACTACAGCAGATTTTGTCTAGGGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCGAAAACGTGAAGAACTACAGCAGATTTTGTCTAGGGTAAA  50

seq1  ACAGTTTGAAGCAGAGTCAAGTAAAAGTGGCCTTAAAACGTTTCAGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGAAGCAGAGTCAAGTAAAAGTGGCCTTAAAACGTTTCAGATAC  100

seq1  TGTTAAATATTGTCCCGGTATGGCTGATAAGTGAGGAGAAAAGAGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATATTGTCCCGGTATGGCTGATAAGTGAGGAGAAAAGAGAATAT  150

seq1  GGAGTTCGTGTTGCCATGGAGAATAATTTCGAAAAAGTCAAAGAAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCGTGTTGCCATGGAGAATAATTTCGAAAAAGTCAAAGAAGAAAT  200

seq1  AACACATATTAAAACTCAAGCCGAGGAGATGCTTCTTCAGTGTGAACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATATTAAAACTCAAGCCGAGGAGATGCTTCTTCAGTGTGAACATG  250

seq1  TAATTCAGACAGCCATGATGGCTTCCCAAACAGGAAAGCAGAGAGATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGACAGCCATGATGGCTTCCCAAACAGGAAAGCAGAGAGATAAA  300

seq1  CCTACCAACCTTAATGAAATGCCACTGAATGTGTCTAATGTTAATCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAACCTTAATGAAATGCCACTGAATGTGTCTAATGTTAATCTCAG  350

seq1  CTCGAGTAAATGCACCGAACAGAAAGAAAGTAAAACTGTAGAAGAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTAAATGCACCGAACAGAAAGAAAGTAAAACTGTAGAAGAAAAAT  400

seq1  TAACACACCGACAAGTAACAACTCATCCTGAGGCAGCAACCCGTAATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACACCGACAAGTAACAACTCATCCTGAGGCAGCAACCCGTAATCCT  450

seq1  GTTAAACCATACCAGGAGGCTAAGGGGGAAGACGGTAAGATGGCTCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACCATACCAGGAGGCTAAGGGGGAAGACGGTAAGATGGCTCCTCC  500

seq1  CTCTTTGAAAACTCGCCCTCCATCACCAACTTTCATTACAATAGAGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAAAACTCGCCCTCCATCACCAACTTTCATTACAATAGAGTCCA  550

seq1  CTGCCCGTAGAGCAGAAACCTCCACGAAGAGTGAGCTTTCTCAGTCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCGTAGAGCAGAAACCTCCACGAAGAGTGAGCTTTCTCAGTCCCCT  600

seq1  AAAAATAACCGTTGTATTGAACCTCCACCCCGAAGACCCGTGGAACATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAACCGTTGTATTGAACCTCCACCCCGAAGACCCGTGGAACATGC  650

seq1  ATCTGGACTTCCCAGATCAAGAACACCACCTTCCCCACCAAGGAGTCGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGACTTCCCAGATCAAGAACACCACCTTCCCCACCAAGGAGTCGTT  700

seq1  CAGAACAACTTGTCAGACTCAAAGACACCACGGCCAGGCTAGCCAAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAACTTGTCAGACTCAAAGACACCACGGCCAGGCTAGCCAAAGGC  750

seq1  ACCATCCCTTGTTCACCAGGAACCCCAGTTCCAATTGTAGAGAAGAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCTTGTTCACCAGGAACCCCAGTTCCAATTGTAGAGAAGAGATC  800

seq1  TGAGGTTGTCATGTCTCCAGCCACACTCCGCAGACAAATCAAGATAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTGTCATGTCTCCAGCCACACTCCGCAGACAAATCAAGATAGAAA  850

seq1  GTCGT-GGTGGGGACTCACCACCCACCATCACAATACCTGTGAGTGTAAA  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGGGTGGGGACTCACCACCCACCATCACAATACCTGTGAGTGTAAA  900

seq1  CCACGTCGTTAGTGGCTCCTTCAGAGAATCTGTAGACGCTCAAGAGGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTCGTTAGTGGCTCCTTCAGAGAATCTGTAGACGCTCAAGAGGCAG  950

seq1  TGAAGAAAACAGAAAAAACGGAGACTTATGTTCATAAAGACAAAATGAAT  999
      |||||||||||| |||||||||||||||||||||| ||||||||||| | 
seq2  TGAAGAAAACAG-AAAAACGGAGACTTATGTTCAT-AAGACAAAATGGA-  997

seq1  TCTGTCAACAGAGCAATGCCAGAGACTGAAAGCTACGATGCAGTCGAAAT  1049
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  TCTGTCAA-AGAGCAATGGCAGAGACTGAAAGCTACGATGCAGTCGAAAT  1046

seq1  CATCCGCAAGGTGGAAGGGCCCCACCTATCA-GAACACACAG--AGAGAT  1096
      |||| ||||||||| |||||||||||||||| ||||||||||  ||||||
seq2  CATCGGCAAGGTGG-AGGGCCCCACCTATCAGGAACACACAGAAAGAGAT  1095

seq1  TTGAAGCCACCAATCAAACTGTTCAAAGGGCTGAACGTTTTCT-GAATGG  1145
      | || |||||||||| ||||||||||||||||| ||| ||||| ||||||
seq2  TGGAGGCCACCAATC-AACTGTTCAAAGGGCTGGACGATTTCTGGAATGG  1144

seq1  CCATGAAAATGAAATAAAC  1164
      ||||| ||||| |||||||
seq2  CCATGGAAATG-AATAAAC  1162

seq1: chr2_67482019_67483196
seq2: B6Ng01-128N19.g_67_1258 (reverse)

seq1  AAAATTTGA-ATGATG--TGTCAACACTTCTGGTACTACTTTC-CTCAAA  46
      |||| |||| ||||||   |||||||| ||||||||  ||||| ||||||
seq2  AAAAATTGAGATGATGGTGGTCAACACCTCTGGTACATCTTTCTCTCAAA  50

seq1  GAAACATTTGTTAAACA-CCAACA-CTA-TGGTAGA-TCTGATCGTACTA  92
      |||| |  ||||||||| |||||| ||| ||||||| |||||||||||||
seq2  GAAA-ACATGTTAAACACCCAACATCTATTGGTAGATTCTGATCGTACTA  99

seq1  AGTA-CTGT-AGGAAG-AAAAATGGCCAAAATTTCTACTCT--CCAATGG  137
       ||| |||| |||||| |||||||||||||| |||||||||  |||||||
seq2  GGTACCTGTAAGGAAGAAAAAATGGCCAAAA-TTCTACTCTTCCCAATGG  148

seq1  A-GTGGACTCAGTCAGATCTGAGCTCCATCTTAGTGACTATACAATAGAA  186
      | | ||||| |||||||||||||||||||| |||||||||  ||||||||
seq2  AGGGGGACTAAGTCAGATCTGAGCTCCATC-TAGTGACTAACCAATAGAA  197

seq1  GCATTGGTCTGCTGGAGGAGTGAGAAATGTAAGGGTAGGCCCCTTCTGAT  236
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCATTGGTCTGCTGGAGGAGTGAGAAATGTAAGGGTAGGCCCATTCTGAT  247

seq1  TGAAGCGCAGTGAGGGGGAGTAGAAATATCAATCAATTAAGCAGTGATAT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCGCAGTGAGGGGGAGTAGAAATATCAATCAATTAAGCAGTGATAT  297

seq1  ATTGATTATTTGTATTTCAT-CCATTTAGAAACTATATCTTATTGATC-A  334
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  ATTGATTATTTGTATTTCATCCCATTTAGAAACTATATCTTATTGATCAA  347

seq1  ATGGTAAGAAGCAATTAGAAAACTGTAAGATGA-CCCATGAATTACAAAA  383
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGGTAAGAAGCAATTAGAAAACTGTAAGATGACCCCATGAATTACAAAA  397

seq1  TTTCTAGGTATGTAAAATTATCAGCAGGAATTGAGGCAATGGTAAAATGT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGTATGTAAAATTATCAGCAGGAATTGAGGCAATGGTAAAATGT  447

seq1  AGAAATTGTTCAATAAAGGAAGACAACAGACAGTGGAAGCCAACATTACG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGTTCAATAAAGGAAGACAACAGACAGTGGAAGCCAACATTACG  497

seq1  TATTTCTTCTGTGAGTCAACATCTGTCTCAGTTCTCATTTGCATCCACAA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCTGTGAGTCAACATCTGTCTCAGTTCTCATTTGCATCCACAA  547

seq1  GAATATTTGTGCCTTAAGGACAAGATGTGTGTGTGTGTGTGTGTGTGTGT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTGTGCCTTAAGGACAAGATGTGTGTGTGTGTGTGTGTGTGTGT  597

seq1  GTGTGTGTGTGTGTGCATGTATGTGTTTATGTGTAAGTGTGTGTGTGGTC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGCATGTATGTGTTTATGTGTAAGTGTGTGTGTGGTC  647

seq1  CACTGTCTATGTGTAAGTGTGTGTGTGGTCCACTGTCTATGTGTAAGTGT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTATGTGTAAGTGTGTGTGTGGTCCACTGTCTATGTGTAAGTGT  697

seq1  GTGTGTGGTCCACTGTCTATGTGTAAGTGTGTGTGTGGTCCACTGTCTAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGTCCACTGTCTATGTGTAAGTGTGTGTGTGGTCCACTGTCTAT  747

seq1  GTGTAAGTGTGTGTGTGGTCCACTGTCTATGTGTAAGTGTGTGTGTGGTC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGTGTGTGTGTGGTCCACTGTCTATGTGTAAGTGTGTGTGTGGTC  797

seq1  CACTGCTCATCTCATCCCGAGTGTCTCATATGCAATGGGTTCAGAATTAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCATCTCATCCCGAGTGTCTCATATGCAATGGGTTCAGAATTAT  847

seq1  TTAATAAAATGTATAGATCATGTTGTAAATTTCTTCAGAAGTCACACAGC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAATGTATAGATCATGTTGTAAATTTCTTCAGAAGTCACACAGC  897

seq1  TTTTATTGCTTTGAAAATTTAATAAACATCATGTACTAAAAAGTGAACAT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGCTTTGAAAATTTAATAAACATCATGTACTAAAAAGTGAACAT  947

seq1  TACCATATGGACAATATTTACAAAGAATTTCAAGATCTGTTGTCAGGAAT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATATGGACAATATTTACAAAGAATTTCAAGATCTGTTGTCAGGAAT  997

seq1  ATGACTAAATAGCCAATATTTAGTTTTCATTCCATAGATAATGAAAAAGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAATAGCCAATATTTAGTTTTCATTCCATAGATAATGAAAAAGT  1047

seq1  TCCCAAATGCCTAAAATGTTTTTGTGGAAGCACTTCAGAAACTCTAAAAG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATGCCTAAAATGTTTTTGTGGAAGCACTTCAGAAACTCTAAAAG  1097

seq1  CTAGATGGTATTATTTATGATTATAAGGAAGGAAGTTTATTTAGACTCTA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGGTATTATTTATGATTATAAGGAAGGAAGTTTATTTAGACTCTA  1147

seq1  CATATAGCATTTAACTCTTGAGCAAGAAAAGAAATAATGGAATTC  1178
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGCATTTAACTCTTGAGCAAGAAAAGAAATAATGGAATTC  1192