BAC Information

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BAC

Clone NameB6Ng01-129A08
Chromosome2 (Build37)
Map Location 102,946,925 - 103,144,642
singlet/doubletdoublet
Overlap geneEhf
Upstream geneLdlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
Downstream geneElf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129A08.bB6Ng01-129A08.g
ACCDH930716DH930717
length1,1511,011
definitionDH930716|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A08, 5' end.DH930717|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,946,925 - 102,948,094)(103,143,635 - 103,144,642)
sequence
gaattcttttaataaattgcaaaatatctcatacagcttatcaaattcag
cataccatagactttagtattggtcatttatcctcatggcagtgcaggtt
actggggctgtggttcagtgctgctgcaatgcatcactttcatgccaaca
taaagttttaaaaagccactaagtagaaccattgtaagtaccacctgtat
acattaagatacatattttattgctattggtttctctggtgtatcttaat
ataccaagtggtcattcagttaaaatactcaatgctaagacctgagtttt
atcagacccaacgagtagtagttcatttatgaacccactcaaaagcgaat
acatggtgtcagccatgagctatccagaagtcataagcaagctgcaaaag
caggtagcccaggtttccatatcattcattactatacgccaacatccttc
tctcttagctcttaatggccacttgggggggaattcttagaactgactga
tggaggaagagcaagcctgggctgtgttcatggaaggggcattttggtgt
aggaatgcaaaccaaatgtgggcagaagctatactataatctgccctggg
gagggatttgggaaaactgggatcaaatcagccagctatagaagtatgga
aaacagatacatccatggacacaaagtgttgaagatcttggaacatggta
ataccaaccacagggcacatactatagaactgatatgaagcaattgggta
gacaggatgaatcagccaggagataccatccagtctccaaatctctctct
gtctctggcaatcattcctttgattaattattacaagccacataagtctt
caatggaccacacacctagcaactaaaggacagcctccaactttgacatc
cacagccaggctttatgggcacataaagaatctgtaggagcagcagagga
ggcaaccgagagacagatctggagacctgataggatcagactccatggct
atgagctcactattctccatgtctaaacttgacctaaattatatttcttc
ttttgcaatcacacaagacatttgcccaacgaatggataatatttcacct
cacagcaacagttttttcgaagtgcctatagctcttcatgtctattcagg
a
gaattcatggtgcttaaaccaagcaacaagtacaagagagcattgaagct
ggctggctcctgccccagtcagcagcacaacaaccatttgggttttgttt
tttccatgaacttttgcatacacacacacacacacacacacacacacaca
ctttttttttttttttttttttttttttttgccacaaaaggaactgagtt
gtgatcacaaaatctttttgccaaactccttcctgtcttccgacaaaggg
agaaaaacctccccgagttcaacaaacctgccaggggatgctttgctcat
aaaagggtggtgtccaggaaaacccaaaagggaaagttaatggttagggg
attgtatttttcctggccagggtagtcgctcacctgtgcaggtggagaaa
catgtgggacccagtgaagcaagaatcggaaactccctgtgcacccttag
ctcaggggggggggatctgtgaaatccgtaggtcccctcagcagttcaca
tcttgctcagactggcatttgggtttctcttttctggatcctacagggag
ggctgataagcagtacgatgcatcgtgtaagagtcaaggggaagggaaga
caagctggtcctccagcccttgtctgggctgaggattgttgcccaaagac
atttcacagtggccccctcccttccagggctgcccgatcccctgaagggg
cttacctggggactggggaaaaacctctgaaattgcaagagtcactaaaa
aaagttgggtctgatgcccaaagacagacaaaaatggactaaaactaaaa
gcccctttcccgcccgggtacctgcacagccagggcaaagatcttgattg
acttacagaagaataaattacgggttagaaatgagcccggatgtttagag
cacctcagccctcttcttcttttgcttgaaagggacttggacttggtttt
tctattccctcttctcagaagcatctttttggggagcgagatactttcca
cccgaaactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_102946925_102948094
seq2: B6Ng01-129A08.b_44_1194

seq1  GAATTCTTTTAATAAATTGCAAAATATCTCATACAGCTTATCAAATTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAATAAATTGCAAAATATCTCATACAGCTTATCAAATTCAG  50

seq1  CATACCATAGACTTTAGTATTGGTCATTTATCCTCATGGCAGTGCAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCATAGACTTTAGTATTGGTCATTTATCCTCATGGCAGTGCAGGTT  100

seq1  ACTGGGGCTGTGGTTCAGTGCTGCTGCAATGCATCACTTTCATGCCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCTGTGGTTCAGTGCTGCTGCAATGCATCACTTTCATGCCAACA  150

seq1  TAAAGTTTTAAAAAGCCACTAAGTAGAACCATTGTAAGTACCACCTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTTAAAAAGCCACTAAGTAGAACCATTGTAAGTACCACCTGTAT  200

seq1  ACATTAAGATACATATTTTATTGCTATTGGTTTCTCTGGTGTATCTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAGATACATATTTTATTGCTATTGGTTTCTCTGGTGTATCTTAAT  250

seq1  ATACCAAGTGGTCATTCAGTTAAAATACTCAATGCTAAGACCTGAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGTGGTCATTCAGTTAAAATACTCAATGCTAAGACCTGAGTTTT  300

seq1  ATCAGACCCAACGAGTAGTAGTTCATTTATGAACCCACTCAAAAGCGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACCCAACGAGTAGTAGTTCATTTATGAACCCACTCAAAAGCGAAT  350

seq1  ACATGGTGTCAGCCATGAGCTATCCAGAAGTCATAAGCAAGCTGCAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGTCAGCCATGAGCTATCCAGAAGTCATAAGCAAGCTGCAAAAG  400

seq1  CAGGTAGCCCAGGTTTCCATATCATTCATTACTATACGCCAACATCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCCCAGGTTTCCATATCATTCATTACTATACGCCAACATCCTTC  450

seq1  TCTCTTAGCTCTTAATGGCCACTTGGGGGGGAATTCTTAGAACTGACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGCTCTTAATGGCCACTTGGGGGGGAATTCTTAGAACTGACTGA  500

seq1  TGGAGGAAGAGCAAGCCTGGGCTGTGTTCATGGAAGGGGCATTTTGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAGAGCAAGCCTGGGCTGTGTTCATGGAAGGGGCATTTTGGTGT  550

seq1  AGGAATGCAAACCAAATGTGGGCAGAAGCTATACTATAATCTGCCCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCAAACCAAATGTGGGCAGAAGCTATACTATAATCTGCCCTGGG  600

seq1  GAGGGATTTGGGAAAACTGGGATCAAATCAGCCAGCTATAGAAGTATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATTTGGGAAAACTGGGATCAAATCAGCCAGCTATAGAAGTATGGA  650

seq1  AAACAGATACATCCATGGACACAAAGTGTTGAAGATCTTGGAACATGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATACATCCATGGACACAAAGTGTTGAAGATCTTGGAACATGGTA  700

seq1  ATACCAACCACAGGGCACATACTATAGAACTGATATGAAGCAATTGGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAACCACAGGGCACATACTATAGAACTGATATGAAGCAATTGGGTA  750

seq1  GACAGGATGAATCAGCCAGGAGATACCATCCAGTCTCCAAATCTCTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATGAATCAGCCAGGAGATACCATCCAGTCTCCAAATCTCTCTCT  800

seq1  GTCTCTGGCAATCATTCCTTTGATTAATTATTACAAGCCACATAAGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGCAATCATTCCTTTGATTAATTATTACAAGCCACATAAGTCTT  850

seq1  CAATGGACCACACACCTAGCAACT-AAGGACAGCCTCCAACTTTGACATC  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAATGGACCACACACCTAGCAACTAAAGGACAGCCTCCAACTTTGACATC  900

seq1  CACAGCCAGGCTTTATGGGCACATAAAGAATCTGTAGGAGCAGCAAGAGG  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACAGCCAGGCTTTATGGGCACATAAAGAATCTGTAGGAGCAGC-AGAGG  949

seq1  AGGCAACCGAGAGACAGATCTGGAAGACCTGATAGGATCAGGACTCCATG  999
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  AGGCAACCGAGAGACAGATCTGG-AGACCTGATAGGATCA-GACTCCATG  997

seq1  GCTATGAGCTCACTATTCTCCCATGTCTAAACTTGACCTAGAATTATATT  1049
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  GCTATGAGCTCACTATTCT-CCATGTCTAAACTTGACCTA-AATTATATT  1045

seq1  TCTTC-TGTGCAATCAACACAAGGACACATTTGCCCAAACGAATGTGATA  1098
      ||||| | ||||||| |||||||   |||||||||| |||||||| ||||
seq2  TCTTCTTTTGCAATC-ACACAAG---ACATTTGCCC-AACGAATG-GATA  1089

seq1  ATATTGTCACCTCAAACGAGCAACCAGTTGTTTCAGATGTGCCTATTAGC  1148
      ||||| ||||||||    ||||| ||||| |||| || ||||||| ||| 
seq2  ATATT-TCACCTCA---CAGCAA-CAGTTTTTTC-GAAGTGCCTA-TAG-  1131

seq1  CTCCTTCCATGTCTATTCAGGA  1170
      |||  | |||||||||||||||
seq2  CTC--TTCATGTCTATTCAGGA  1151

seq1: chr2_103143635_103144642
seq2: B6Ng01-129A08.g_68_1078 (reverse)

seq1  GCAGTTTCAGGTGAAAAGTATCTCGCTCCCC-AAAAGATGC-TCTGAGGA  48
      |||||||| |||| ||||||||||||||||| ||||||||| ||||| ||
seq2  GCAGTTTCGGGTGGAAAGTATCTCGCTCCCCAAAAAGATGCTTCTGA-GA  49

seq1  AGGGGGAATAGAAAAGCCAAGTCCAAGTCCCTGTCAAGCAAATGAAGGAA  98
      || |||||||||||| |||||||||||||||| ||||||||| ||| |||
seq2  AGAGGGAATAGAAAAACCAAGTCCAAGTCCCTTTCAAGCAAAAGAA-GAA  98

seq1  GAGGGCCTGAGGTGCTCTTAAACATCC-GGCTCATTTTCTAACCCGT-AT  146
      ||||| ||||||||||| ||||||||| |||||| |||||||||||| ||
seq2  GAGGG-CTGAGGTGCTC-TAAACATCCGGGCTCA-TTTCTAACCCGTAAT  145

seq1  TTAGTCCTCTGCTATGTC-ATCAAGATCTTTGCCCTGGCTGTGCAGGTAC  195
      ||| || |||| || ||| |||||||||||||||||||||||||||||||
seq2  TTATTCTTCTG-TAAGTCAATCAAGATCTTTGCCCTGGCTGTGCAGGTAC  194

seq1  CC-GGCGTGGAAGGAGCTTCTAGTTTCTAGTCCA-TTCTGTCTGTCTCTG  243
      || |||| | |||| |||| |||||| ||||||| || ||||||||| ||
seq2  CCGGGCGGGAAAGGGGCTTTTAGTTT-TAGTCCATTTTTGTCTGTCTTTG  243

seq1  GGCATCATGACCAACTCTTTGTAGTGACTCTTGACAATTTCAGAGGCTTT  293
      |||||||   |||||| ||| |||||||||||| |||||||||||| |||
seq2  GGCATCAGACCCAACTTTTTTTAGTGACTCTTG-CAATTTCAGAGGTTTT  292

seq1  TCCCCAGT-CCCAGGTAAGCACC-TCAGAGGATCGGACAGCCCTGGAAGG  341
      |||||||| ||||||||||| || |||| ||||||| |||||||||||||
seq2  TCCCCAGTCCCCAGGTAAGCCCCTTCAGGGGATCGGGCAGCCCTGGAAGG  342

seq1  GA-GGGGCCACTGTGAAATGTCTTTGGGCAACAATCCTCAG-CCAGACAA  389
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGGGGGCCACTGTGAAATGTCTTTGGGCAACAATCCTCAGCCCAGACAA  392

seq1  GGGCTGGAGGACCAGCTTGTCTTCCCTTCCCCTTGACTCTTACACGATGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAGGACCAGCTTGTCTTCCCTTCCCCTTGACTCTTACACGATGC  442

seq1  ATCGTACTGCTTATCAGCCCTCCCTGTAGGATCCAGAAAAGAGAAAACCA  489
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCGTACTGCTTATCAGCCCTCCCTGTAGGATCCAGAAAAGAGAAACCCA  492

seq1  AATGCCAGTCTGAGCAAGATGTGAACTGCTGAGGGGACCTACGGATTTCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGTCTGAGCAAGATGTGAACTGCTGAGGGGACCTACGGATTTCA  542

seq1  CAGATCCCCACCCCCTGAGCTAAGGGTGCACAGGGAGTTTCCGATTCTTG  589
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCCCCCCCCTGAGCTAAGGGTGCACAGGGAGTTTCCGATTCTTG  592

seq1  CTTCACTGGGTCCCACATGTTTCTCCACCTGCACAGGTGAGCGACTACCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGGGTCCCACATGTTTCTCCACCTGCACAGGTGAGCGACTACCC  642

seq1  TGGCCAGGAAAAATACAATCCCCTAACCATTAACTTTCCCTTCTGGGTCT  689
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TGGCCAGGAAAAATACAATCCCCTAACCATTAACTTTCCCTTTTGGGTTT  692

seq1  TCCTGGACACCAGCCTTCTATGAGCAAAGCATCCCCTGGCAGGTTTGTTG  739
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  TCCTGGACACCACCCTTTTATGAGCAAAGCATCCCCTGGCAGGTTTGTTG  742

seq1  AACTCGGCGAGGCTCTTCTCCCTTTGTCGGAAGACAGGAAGGAGTTTGGC  789
      ||||||| |||| | |||||||||||||||||||||||||||||||||||
seq2  AACTCGGGGAGGTTTTTCTCCCTTTGTCGGAAGACAGGAAGGAGTTTGGC  792

seq1  AAAAAGATTTTGTGATCACAACTCAGTTCCTTCTGTGGCAAAAAAAAAAA  839
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAAAGATTTTGTGATCACAACTCAGTTCCTTTTGTGGCAAAAAAAAAAA  842

seq1  AAAAAAAAAAAAAAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  892

seq1  ATGCAAAAGTTCATGGAAAAAACAAAACCCAAATGGTTGTTGTGCTGCTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAGTTCATGGAAAAAACAAAACCCAAATGGTTGTTGTGCTGCTG  942

seq1  ACTGGGGCAGGAGCCAGCCAGCTTCAATGCTCTCTTGTACTTGTTGCTTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCAGGAGCCAGCCAGCTTCAATGCTCTCTTGTACTTGTTGCTTG  992

seq1  GTTTAAGCACCATGAATTC  1008
      |||||||||||||||||||
seq2  GTTTAAGCACCATGAATTC  1011