BAC Information

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BAC

Clone NameB6Ng01-129A13
Chromosome2 (Build37)
Map Location 84,707,339 - 84,859,871
singlet/doubletdoublet
Overlap geneRtn4rl2, Slc43a3, Prg2, Prg3, P2rx3
Upstream geneD430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1
Downstream geneSsrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129A13.bB6Ng01-129A13.g
ACCDH930726DH930727
length9181,079
definitionDH930726|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A13, 5' end.DH930727|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,707,339 - 84,708,258)(84,858,848 - 84,859,871)
sequence
gaattctcactcacagcttcctccatgtgtgtatgtttggggaggacctc
taactttcttttgcattgctgcctgctcccctctttcctcccctccccac
tcacaagattctcagtcttaagtgcacttacagtagctccccgcttgaaa
aaaaagcagattcccgcacccccagctatctgattcagcagcggtcggtt
ggtcggtcgagggggctcaggaaccagcttccctcctaatcagataaaac
ggcccttacctttgaaacacagtgcaaaggctaaatggactgaaaaaaat
agggacccagttccttctacagccccccccccccccccccccgcacacta
tggctgtctctggtgtgatgatatctggcctggagaagatgccaggtgga
aaaaaagaaagcggaggcaacagggaagggggaggggaagaatccgagat
aaaagggtgagtctgcccctggctcttctctaagatggccccctttctct
cctgccccacctcagggttctcccctcttttgccccatctctacttcccc
actcatcagctctctactgttgactttctgatccacattctcctctcttc
tcatctgtagctcctgggagaaatttgaggctcaggctttttggaggtga
ctggagacaacaaaagcagttggagccctaccttcaaaacaaagaggcaa
agccacttctaggggtggaagaaaagaagatgagaagagacagggcttgt
gggaagatggtgctgacaaatacaggctatttccctttcctgcgacctgc
tggatgcttgctccccaacttacaactcagtatatcagagatctccccca
cccagatgttccaatccaacattaccacaaaaatgtaatatcggaagaag
tatttgccaaggtcacat
gaattcagtatggggcaggaggggggggcaggagaagtcttctaagaact
gttatttttgttatggttatttctctaagaacagctaatattattttggc
agctgtaggcttaatcattttgactgcgaaaactatgtttttacatatgt
ttagtcagccaactttcttatctggctctgcacttggcctgtgtcttagt
tagggttttactgctgtgaacagacaccaggaccaaggcaagtcttatta
aaaaaaaaaaaaaaaacatttaattggagctggcttacaggttccgaggt
tcagtccattatcatcaaggtgggagcatgacaatatccaggcaggcatg
gcgcaggaggagctgagagttctgtgtcttcatccaaaggctgctagtgg
aagactgactttcaggcaactagggtgaggatcttatgcccacacccaca
gtgacacacgcattccaaccaggtcacacctgttccaacaaggccacacc
tccagatggtgccactccctggtccaaggatatacaaaccatcacagcct
actattcagtttggaatgtccttttcgaagggggaaggtactgggtggtc
ttgattcattttggatactacagagtctcttaagagacttgggacatctc
ttagccatgagcctctattttaaaaaaaaaaaaagcctaccactcaccga
cttctcaaatacagtggcatgaaaaaaaaatttctccttcccaaaaagga
agattgggaataaagcaagggaaagactatgccaaagccagactggatca
cagtagggcaacaccaaatttctgtagtcctgtgtatggcatctgggggc
tcttggtgacgttaccctgggctgcatctgccttgggtagctgcaatgtc
cttgttctggtgcctacaggacacatagactctctcttgggctagttcta
cttcatgcctgcagttttcttagaaaaacattcttaattcctagcacctt
caataatcctggagtcctctatgcagcttagcttcaccttctcagctttc
acagaaacagccctcttaatgctcctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84707339_84708258
seq2: B6Ng01-129A13.b_47_964

seq1  GAATTCTCACTCACAGCTTCCTCCATGTGTGTATGTTTGGGGAGGACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTCACAGCTTCCTCCATGTGTGTATGTTTGGGGAGGACCTC  50

seq1  TAACTTTCTTTTGCATTGCTGCCTGCTCCCCTCTTTCCTCCCCTCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCTTTTGCATTGCTGCCTGCTCCCCTCTTTCCTCCCCTCCCCAC  100

seq1  TCACAAGATTCTCAGTCTTAAGTGCACTTACAGTAGCTCCCCGCTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGATTCTCAGTCTTAAGTGCACTTACAGTAGCTCCCCGCTTGAAA  150

seq1  AAAAAGCAGATTCCCGCACCCCCAGCTATCTGATTCAGCAGCGGTCGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAGATTCCCGCACCCCCAGCTATCTGATTCAGCAGCGGTCGGTT  200

seq1  GGTCGGTCGAGGGGGCTCAGGAACCAGCTTCCCTCCTAATCAGATAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGTCGAGGGGGCTCAGGAACCAGCTTCCCTCCTAATCAGATAAAAC  250

seq1  GGCCCTTACCTTTGAAACACAGTGCAAAGGCTAAATGGACTGAAAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTACCTTTGAAACACAGTGCAAAGGCTAAATGGACTGAAAAAAAT  300

seq1  AGGGACCCAGTTCCTTCTACAGCCCCCCCCCCCCCCCCCCCCCGCACACT  350
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGGACCCAGTTCCTTCTACAG-CCCCCCCCCCCCCCCCCCCCGCACACT  349

seq1  ATGGCTGTCTCTGGTGTGATGATATCTGGCCTGGAGAAGATGCCAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTCTCTGGTGTGATGATATCTGGCCTGGAGAAGATGCCAGGTGG  399

seq1  AAAAAAAGAAAGCGGAGGCAACAGGGAAGGGGGAGGGGAAGAATCCGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAAGCGGAGGCAACAGGGAAGGGGGAGGGGAAGAATCCGAGA  449

seq1  TAAAAGGGTGAGTCTGCCCCTGGCTCTTCTCTAAGATGGCCCCCTTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGTGAGTCTGCCCCTGGCTCTTCTCTAAGATGGCCCCCTTTCTC  499

seq1  TCCTGCCCCACCTCAGGGTTCTCCCCTCTTTTGCCCCATCTCTACTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCCACCTCAGGGTTCTCCCCTCTTTTGCCCCATCTCTACTTCCC  549

seq1  CACTCATCAGCTCTCTACTGTTGACTTTCTGATCCACATTCTCCTCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATCAGCTCTCTACTGTTGACTTTCTGATCCACATTCTCCTCTCTT  599

seq1  CTCATCTGTAGCTCCTGGGAGAAATTTGAGGCTCAGGCTTTTTGGAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGTAGCTCCTGGGAGAAATTTGAGGCTCAGGCTTTTTGGAGGTG  649

seq1  ACTGGAGACAACAAAAGCAGTTGGAGCCCTACCTTCAAAACAAAGAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGACAACAAAAGCAGTTGGAGCCCTACCTTCAAAACAAAGAGGCA  699

seq1  AAGCCACTTCTAGGGGTGGAAGAAAAGAAGATGAGAAGAGACAGGGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTTCTAGGGGTGGAAGAAAAGAAGATGAGAAGAGACAGGGCTTG  749

seq1  TGGGAAGATGGTGCCGACAAATACAGGCTATTTCCCCTTTCCTGCGACCT  800
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  TGGGAAGATGGTGCTGACAAATACAGGCTATTT-CCCTTTCCTGCGACCT  798

seq1  GCTGGATGCTTGCTCCCCAAC-TACAACTCAGTTATATCAGAGATCTCCC  849
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  GCTGGATGCTTGCTCCCCAACTTACAACTCAG-TATATCAGAGATCTCCC  847

seq1  CCACCCAGATG-TCCAAACCAACAATACCAACAAAAAGGGATATCGGGAG  898
      ||||||||||| ||||| |||||| |||||  |||| |  ||||||| ||
seq2  CCACCCAGATGTTCCAATCCAACATTACCACAAAAATGTAATATCGGAAG  897

seq1  AAGTAATTTGCCAAGGTCACAT  920
      |||| |||||||||||||||||
seq2  AAGT-ATTTGCCAAGGTCACAT  918

seq1: chr2_84858848_84859871
seq2: B6Ng01-129A13.g_116_1147 (reverse)

seq1  GTCAGGAAGCATTAAGA-GGCTGTTTC-GTG-AAGCTGAGAAGGTGAAGC  47
      |||||| |||||||||| ||||||||| ||| ||||||||||||||||| 
seq2  GTCAGG-AGCATTAAGAGGGCTGTTTCTGTGAAAGCTGAGAAGGTGAAG-  48

seq1  CTAAGCTGCAATAGA-GACTCCAGGA-TATTGAAGGTGCTAGGAATAGAG  95
      ||||||||| ||||| |||||||||| |||||||||||||||||||  ||
seq2  CTAAGCTGC-ATAGAGGACTCCAGGATTATTGAAGGTGCTAGGAATTAAG  97

seq1  AATG-TTTTCTAAGAAAAACTGCAGGCATGAAGTAGAACTAGCCCAAGAG  144
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTCTAAG-AAAACTGCAGGCATGAAGTAGAACTAGCCCAAGAG  146

seq1  AGAGTCTATGTGTCCTGTAGGCACCAGAACAAGGACATTGCAGCTACCCA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTATGTGTCCTGTAGGCACCAGAACAAGGACATTGCAGCTACCCA  196

seq1  AGGCAGATGCAG-CCAAGGTAACGTCACCAAGAG-CCCCAGATGCCATAC  242
      |||||||||||| ||| ||||||||||||||||| |||||||||||||||
seq2  AGGCAGATGCAGCCCAGGGTAACGTCACCAAGAGCCCCCAGATGCCATAC  246

seq1  ACAGGACTACAG-AATTTGGTGTTGCCCTACTGTGATCCAGTCTGGCTTT  291
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTACAGAAATTTGGTGTTGCCCTACTGTGATCCAGTCTGGCTTT  296

seq1  GGCATAGTCTTT-CCTTGCTTTATTCCCAATCTTCCTTTTT-GGAAGGAG  339
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  GGCATAGTCTTTCCCTTGCTTTATTCCCAATCTTCCTTTTTGGGAAGGAG  346

seq1  AAA-TTTTTTTTCATGCCACTGTATTTGAGAAGTCGGTGAGTGGTAGGCT  388
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTTTTCATGCCACTGTATTTGAGAAGTCGGTGAGTGGTAGGCT  396

seq1  TTTTTTTTTTTTAAAATAGAGGCTCATGGCTAAGAGATGTCCCAAGTCTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAAAATAGAGGCTCATGGCTAAGAGATGTCCCAAGTCTC  446

seq1  TTAAGAGACTCTGTAGTATCCAAAATGAATCAAGACCACCCAGTACCTTC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGACTCTGTAGTATCCAAAATGAATCAAGACCACCCAGTACCTTC  496

seq1  CCCCTTCGAAAAGGACATTCCAAACTGAATAGTAGGCTGTGATGGTTTGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCGAAAAGGACATTCCAAACTGAATAGTAGGCTGTGATGGTTTGT  546

seq1  ATATCCTTGGACCAGGGAGTGGCACCATCTGGAGGTGTGGCCTTGTTGGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTGGACCAGGGAGTGGCACCATCTGGAGGTGTGGCCTTGTTGGA  596

seq1  ACAGGTGTGACCTGGTTGGAATGCGTGTGTCACTGTGGGTGTGGGCATAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTGACCTGGTTGGAATGCGTGTGTCACTGTGGGTGTGGGCATAA  646

seq1  GATCCTCACCCTAGTTGCCTGAAAGTCAGTCTTCCACTAGCAGCCTTTGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCACCCTAGTTGCCTGAAAGTCAGTCTTCCACTAGCAGCCTTTGG  696

seq1  ATGAAGACACAGAACTCTCAGCTCCTCCTGCGCCATGCCTGCCTGGATAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACACAGAACTCTCAGCTCCTCCTGCGCCATGCCTGCCTGGATAT  746

seq1  TGTCATGCTCCCACCTTGATGATAATGGACTGAACCTCGGAACCTGTAAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGCTCCCACCTTGATGATAATGGACTGAACCTCGGAACCTGTAAG  796

seq1  CCAGCTCCAATTAAATGTTTTTTTTTTTTTTTTTAATAAGACTTGCCTTG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCAATTAAATGTTTTTTTTTTTTTTTTTAATAAGACTTGCCTTG  846

seq1  GTCCTGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAGACACAGGCCAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAGACACAGGCCAA  896

seq1  GTGCAGAGCCAGATAAGAAAGTTGGCTGACTAAACATATGTAAAAACATA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGCCAGATAAGAAAGTTGGCTGACTAAACATATGTAAAAACATA  946

seq1  GTTTTCGCAGTCAAAATGATTAAGCCTACAGCTGCCAAAATAATATTAGC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCGCAGTCAAAATGATTAAGCCTACAGCTGCCAAAATAATATTAGC  996

seq1  TGTTCTTAGAGAAATAACCATAACAAAAATAACAGT  1024
      ||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAGAGAAATAACCATAACAAAAATAACAGT  1032