BAC Information

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BAC

Clone NameB6Ng01-129I17
Chromosome11 (Build37)2 (Build37)
Map Location 86,786,492 - 86,787,55166,013,364 - 66,013,623
singlet/doubletsingletsinglet
Overlap geneYpel2
Upstream geneBrip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40
Downstream geneGdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129I17.bB6Ng01-129I17.g
ACCDH931098DH931099
length1,053147
definitionDH931098|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I17, 5' end.DH931099|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,786,492 - 86,787,551)(66,013,364 - 66,013,623)
sequence
gaattcagggcataaccaggaacctctgcttttttttaggcttcctacag
aggagcggtgagaaaagaaataattctactccagggaaatgcataattga
gaggctgcctgcgtgcttaagaaaacacaccgcgtggcctctctaaagca
gaaaggccgcccgagccattgctttcctttctcgagctgctgtttgtgta
agacctgggttcggtgctgctcatcctggccaccgggcagccccggctgt
ggacttagcatctggcttagacagctggtaatggtgttgcacacttctaa
tcccagctctagggaacagaggcaagaagttccaggccggcttgggctat
gaagagagcaaacaaacaaaacccagaccaaacaaaaagaactcccaccg
tctaataaaacagcggcatttggtgtgaacttcggctgaatgctgcttcc
atgtctctatgtccccttctggaatttttgtccttgctagcagcagaatt
ggggtgttggaaatattgagcacgtgccaggaaacccagtggaagggcag
ggaatggtaacttagccctttcacctttgagcctttgctcactgcaggcc
agcttgggatccaaggcatccgctgtggctgtgcctaactctgaggcaca
gtgtatggtgtcatttcccacctctgcctcctgccagcatttctctgtgt
aacccaattcctcatcctgaacaggtgggagactgagcagggaagacatt
gtgccctggcccctgtgggtttgaatctgaatccctttagaaattagaca
agtcacatgagagatgtgtgttacacttggagcctacttggctcaagggt
gctgtggagacgtataatggctagtagccactcttgtcttcattatagtg
ctaggcagtggtattatccactccgaaagttgagagccccaaagctggtg
tggaaagaatgaatgcagtttggtggggacaaggtatgcagctttcatga
gacttgctttaggtggatttagaggaaaagaacattttatttcacaggtt
ttc
aaggccagcctggtctacagagtgagttccaggacagccaaggttacaca
aaggtgaaagaaaggaagaaagaaagaaagaaagaaagaaagagagagaa
agaaagaaagagaaagaaggagggagggagggagggagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86786492_86787551
seq2: B6Ng01-129I17.b_50_1102 (reverse)

seq1  GAAAACCTGTGAATTATAATGTTCTTTTTCCTCTAAATCCACTAAAAGCA  50
      ||||||||||||| || ||||||| |||||||||||||||||  ||||||
seq2  GAAAACCTGTGAAATAAAATGTTC-TTTTCCTCTAAATCCACCTAAAGCA  49

seq1  AGTCTTCCATGAAAGGCTGCATACCCTGTCCCCACCAACCTGCCTTTCAT  100
      |||||  ||||||| |||||||||| |||||||||||| ||| | |||||
seq2  AGTCT--CATGAAA-GCTGCATACCTTGTCCCCACCAAACTG-CATTCAT  95

seq1  TCTTTCCACACCAGCCTTTGGGGCTCTCAACCTTTCGGAGTGGATAATAC  150
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  TCTTTCCACACCAG-CTTTGGGGCTCTCAA-CTTTCGGAGTGGATAATAC  143

seq1  CACTGCCTAGCACTATAATGAAGACAAGAGTGGCTACTAGCCCTTATACG  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACTGCCTAGCACTATAATGAAGACAAGAGTGGCTACTAGCCATTATACG  193

seq1  TCTCCACAGCACCCTTGAGCCAAGTAGGCTCCAAGTGTAACACACATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAGCACCCTTGAGCCAAGTAGGCTCCAAGTGTAACACACATCTC  243

seq1  TCATGTGACTTGTCTAATTTCTAAAGGGATTCAGATTCAAACCCACAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGACTTGTCTAATTTCTAAAGGGATTCAGATTCAAACCCACAGGG  293

seq1  GCCAGGGCACAATGTCTTCCCTGCTCAGTCTCCCACCTGTTCAGGATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCACAATGTCTTCCCTGCTCAGTCTCCCACCTGTTCAGGATGAG  343

seq1  GAATTGGGTTACACAGAGAAATGCTGGCAGGAGGCAGAGGTGGGAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGTTACACAGAGAAATGCTGGCAGGAGGCAGAGGTGGGAAATGA  393

seq1  CACCATACACTGTGCCTCAGAGTTAGGCACAGCCACAGCGGATGCCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATACACTGTGCCTCAGAGTTAGGCACAGCCACAGCGGATGCCTTGG  443

seq1  ATCCCAAGCTGGCCTGCAGTGAGCAAAGGCTCAAAGGTGAAAGGGCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAGCTGGCCTGCAGTGAGCAAAGGCTCAAAGGTGAAAGGGCTAAG  493

seq1  TTACCATTCCCTGCCCTTCCACTGGGTTTCCTGGCACGTGCTCAATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATTCCCTGCCCTTCCACTGGGTTTCCTGGCACGTGCTCAATATTT  543

seq1  CCAACACCCCAATTCTGCTGCTAGCAAGGACAAAAATTCCAGAAGGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACCCCAATTCTGCTGCTAGCAAGGACAAAAATTCCAGAAGGGGAC  593

seq1  ATAGAGACATGGAAGCAGCATTCAGCCGAAGTTCACACCAAATGCCGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGACATGGAAGCAGCATTCAGCCGAAGTTCACACCAAATGCCGCTG  643

seq1  TTTTATTAGACGGTGGGAGTTCTTTTTGTTTGGTCTGGGTTTTGTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAGACGGTGGGAGTTCTTTTTGTTTGGTCTGGGTTTTGTTTGTT  693

seq1  TGCTCTCTTCATAGCCCAAGCCGGCCTGGAACTTCTTGCCTCTGTTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTCATAGCCCAAGCCGGCCTGGAACTTCTTGCCTCTGTTCCCT  743

seq1  AGAGCTGGGATTAGAAGTGTGCAACACCATTACCAGCTGTCTAAGCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGGATTAGAAGTGTGCAACACCATTACCAGCTGTCTAAGCCAGA  793

seq1  TGCTAAGTCCACAGCCGGGGCTGCCCGGTGGCCAGGATGAGCAGCACCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTCCACAGCCGGGGCTGCCCGGTGGCCAGGATGAGCAGCACCGA  843

seq1  ACCCAGGTCTTACACAAACAGCAGCTCGAGAAAGGAAAGCAATGGCTCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTCTTACACAAACAGCAGCTCGAGAAAGGAAAGCAATGGCTCGG  893

seq1  GCGGCCTTTCTGCTTTAGAGAGGCCACGCGGTGTGTTTTCTTAAGCACGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCTTTCTGCTTTAGAGAGGCCACGCGGTGTGTTTTCTTAAGCACGC  943

seq1  AGGCAGCCTCTCAATTATGCATTTCCCTGGAGTAGAATTATTTCTTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCTCTCAATTATGCATTTCCCTGGAGTAGAATTATTTCTTTTCT  993

seq1  CACCGCTCCTCTGTAGGAAGCCTAAAAAAAAGCAGAGGTTCCTGGTTATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCTCCTCTGTAGGAAGCCTAAAAAAAAGCAGAGGTTCCTGGTTATG  1043

seq1  CCCTGAATTC  1060
      ||||||||||
seq2  CCCTGAATTC  1053

seq1: chr2_66013364_66013623
seq2: B6Ng01-129I17.g_74_220 (reverse)

seq1  TCTCTCTCTCTCCCTCCCTCCCTCTTTCTCTTTCTTCCTTCCTTCCTTCC  50
      ||||||||||||||||||||||                            
seq2  TCTCTCTCTCTCCCTCCCTCCC----------------------------  22

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTT  100
                   ||| |||||| |||                   ||||
seq2  -------------TCCCTCCTTCTTTC-------------------TCTT  40

seq1  TCTTTCTTTCTTTCTCTTTCTTCCTTTCTTTCTTTCTTCCTTTCTTCCTT  150
      ||||||||||| |||||||||| ||||||||||||            |||
seq2  TCTTTCTTTCTCTCTCTTTCTTTCTTTCTTTCTTT------------CTT  78

seq1  TCTTCCTTTCTTTCTTTTTTTCTTTCTTTCTTCCTTAGTTTTTTTGAGAC  200
      ||||||||||||||                  ||||              
seq2  TCTTCCTTTCTTTC-----------------ACCTT--------------  97

seq1  AGGGTTTTTCTGTATAGCCCTGGCTATCCTGGTACTCACTCTGTAGACCA  250
                ||| || || ||||| |||||| |||||||||||||||||
seq2  ----------TGTGTAACCTTGGCTGTCCTGGAACTCACTCTGTAGACCA  137

seq1  GGATGGCCTT  260
      || |||||||
seq2  GGCTGGCCTT  147