BAC Information

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BAC

Clone NameB6Ng01-129K24
Chromosome2 (Build37)17 (Build37)
Map Location 181,211,665 - 181,212,46732,595,614 - 32,596,029
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNtsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4
Downstream geneBC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129K24.bB6Ng01-129K24.g
ACCDH931205DH931206
length1,078411
definitionDH931205|Mus musculus domesticus DNA, BAC clone: B6Ng01-129K24, 5' end.DH931206|Mus musculus domesticus DNA, BAC clone: B6Ng01-129K24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(181,211,665 - 181,212,467)(32,595,614 - 32,596,029)
sequence
gaattccaggctactttatcaaaaaatcaaaagtagcagccagcatggta
gcttactatcataacaggagtagagatcacaaggtaccatgctcagcact
caatctcctcatgattgagatctctcaggagctcctgcacctcccataag
cagcactctgggtattctgggtgcctcaccaggttgtacaggatccagga
gagtgcatgtcccgaggggcacacaagcaaacatggatccctggccccct
cagcaccaaagagtgggcaatgctcagggagggtagaaagtgctggatga
aaggagacaggagaggaatatctgagcttgttgcagagtcacaagagacc
aagggtataacagagtctcctccatgaggcctgtactggctagtgatgtg
tcaacttgacacagctggagttatcacagagaaaggagcttctgttgaga
taatgcctccatgagattcaactgtaaggcattttctcaattagtgatca
tgggggaagggccccttgtgggtggtaccatctctgggctggtagtcttg
ggttctataagagagcaggctgagcaagccaggggaagcaagccagtaaa
gaacatccctccgtggcttctgcatcagctcctgctttctgacctgcttg
agttccggtcctgacttccttagtgatgaacagcagtatggaagtgtaag
ctgaataaaccctttcctccccaacttgcttcttggtcatgatgtttgtg
caggaatagaaaccctgactaagacaaattggtaccagcatagtggggta
ttcctgtgacaacctgaccatgtattggggaggactgtggaaggactttg
gaactttgagctacaagatccattcaatgttaagagctctgtgggatgtt
gtgtaggagcttggaagatatgttgaaaacagtgcagagatagaggcctg
catgtgaaatttcagagggaaaagtaaagactctttttctgggcattgtt
actttgattgtaaaggtcgatagttctggttagctggggctgagatcagc
tgtgattaacagatacccagactaggaa
aggttgttaggcttgtcagcgagcacctttacctgtgagtcatcttgctg
gccctcaaaactttttgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtactcgagaatgtacttgcatgcacacatgtgcaactgaacatgtg
aattcatttgtagatgtgcacgtggaggccagaggaggaacccactctgc
aatttactctgttgaaataaagtctcccatcaaacctggagctcattgct
gttgtgttagactgaccagcaacaagcatggttatcctcatgtcttactg
ccctgcccccaaacagcattgagcttccaagtttatgctgccatgtcagc
tttctctgattctatgtgggtgatagaaatcttgaactcagtcctcatgt
ttgcatagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181211665_181212467
seq2: B6Ng01-129K24.b_532_1118 (reverse)

seq1  GGTATCTTGTTAATCACAGCTGATTCTTCAACCCTAGCTAATCAGAACCA  50
      |||||| |||||||||||||||||   ||| ||| |||||| |||||| |
seq2  GGTATC-TGTTAATCACAGCTGAT--CTCAGCCCCAGCTAACCAGAACTA  47

seq1  CAGAATCTTCAAAATCAAACTAGCAATGGCCCTGAAAAA-AGTCTTTAAT  99
        | | ||| | ||||||| || |||| |||| |||||| |||||||| |
seq2  TCG-ACCTTTACAATCAAAGTAACAAT-GCCCAGAAAAAGAGTCTTTACT  95

seq1  CTTCCCTCTGAAATTTTACAAGCCAGACCTCCATCTTCTGCACTGTTCTC  149
       ||||||||||||||| ||| | ||| |||| ||| ||||||||||| ||
seq2  TTTCCCTCTGAAATTTCACATG-CAGGCCTCTATC-TCTGCACTGTTTTC  143

seq1  AACATTATCTTCCAAGCTCCTACACAACATTCCACAGAGCTCTTAACACC  199
      |||| ||||||||||||||||||||||||| |||||||||||||||||  
seq2  AACA-TATCTTCCAAGCTCCTACACAACATCCCACAGAGCTCTTAACATT  192

seq1  AAATGGATCTTCTGGCCCAAAGTTCCAAAGTCCTTCCACAGTCTTCACCA  249
       |||||||||| | || |||||||||||||||||||||||||| || |||
seq2  GAATGGATCTTGTAGCTCAAAGTTCCAAAGTCCTTCCACAGTCCTCCCCA  242

seq1  AAACATGATCAGGCTGTCTCAAGAATACCCCAC--TTCTGGTACCAATTT  297
      | ||||| ||||| |||| || |||||||||||  | |||||||||||||
seq2  ATACATGGTCAGGTTGTCACAGGAATACCCCACTATGCTGGTACCAATTT  292

seq1  GTCTTAGTCAGGGTTTCTTTTTTTTAATATTTTTTTAGATTTATTTATTA  347
      ||||||||||||                                      
seq2  GTCTTAGTCAGG--------------------------------------  304

seq1  TTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGG  397
                                                        
seq2  --------------------------------------------------  304

seq1  GAGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGA  447
                                                        
seq2  --------------------------------------------------  304

seq1  TTTGAACTCCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCTGCTGAG  497
                                                        
seq2  --------------------------------------------------  304

seq1  CCATCTCACCAGCCCTAGTCAGTGTTTCTATTCCTGGACAAAACATCATG  547
                             ||||||||||||| || ||||||||||
seq2  -----------------------GTTTCTATTCCTGCAC-AAACATCATG  330

seq1  ACCAAGTAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCAT  597
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCAT  380

seq1  ACTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGG  647
      ||||||||||||||| |||||||||||||| |||||||||||||||||| 
seq2  ACTGCTGTTCATCACTAAGGAAGTCAGGACCGGAACTCAAGCAGGTCAGA  430

seq1  AAGCAGGAGCTGATGCAGAGGCCACGGAGGGATGTTTCTTACTGGCTTGC  697
      ||||||||||||||||||| ||||||||||||||||  ||||||||||||
seq2  AAGCAGGAGCTGATGCAGAAGCCACGGAGGGATGTTCTTTACTGGCTTGC  480

seq1  TT-CCCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTGCCAGC  746
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGC  530

seq1  CCAGAGATGGTCCTACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTG  796
      ||||||||||| | |||||||||||||| ||||||| |||||||||||||
seq2  CCAGAGATGGTACCACCCACAAGGGGCCCTTCCCCCATGATCACTAATTG  580

seq1  AGAAAAT  803
      |||||||
seq2  AGAAAAT  587

seq1: chr17_32595614_32596029
seq2: B6Ng01-129K24.g_66_482

seq1  GAATTCAGGTTGTTAGGCTTGTCAGCGAGCACCTTTACCTGTGAGTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTGTTAGGCTTGTCAGCGAGCACCTTTACCTGTGAGTCATC  50

seq1  TTGCTGGCCCTCAAAACTTTTTGTAGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGCCCTCAAAACTTTTTGTAGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTGTGTACTCGAGAATGTACTTGCATGCACACATGTGCAACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTACTCGAGAATGTACTTGCATGCACACATGTGCAACTGAA  150

seq1  CATGTGAATTCATTTGTAGATGTGCACGTGGAGGCCAGAGGAGGAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAATTCATTTGTAGATGTGCACGTGGAGGCCAGAGGAGGAACCCA  200

seq1  CTCTGCAATTTACTCTGTTGAAATAAAGTCTCCCATCAAACCTGGAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAATTTACTCTGTTGAAATAAAGTCTCCCATCAAACCTGGAGCTC  250

seq1  ATTGCTGTTGTGTTAGACTGACCAGCAACAAGCATGGTTATCCTCATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTTGTGTTAGACTGACCAGCAACAAGCATGGTTATCCTCATGTC  300

seq1  TTACTGCCCTGCCCCCAAACAGCATTGAGCTTCCAAGTTTATGCTGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCCCTGCCCCCAAACAGCATTGAGCTTCCAAGTTTATGCTGCCAT  350

seq1  GTCAGCTTTCTCTGATTCTATGTGGGTGATAGAAATC-TGAACTCAGTCC  399
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTCAGCTTTCTCTGATTCTATGTGGGTGATAGAAATCTTGAACTCAGTCC  400

seq1  TCATGTTTGCATAGCAA  416
      |||||||||||||||||
seq2  TCATGTTTGCATAGCAA  417