BAC Information

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BAC

Clone NameB6Ng01-130B23
Chromosome2 (Build37)
Map Location 106,851,583 - 106,970,474
singlet/doubletdoublet
Overlap geneLOC383739, Fshb
Upstream geneLOC668765, Dcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik
Downstream geneKcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130B23.bB6Ng01-130B23.g
ACCDH931517DH931518
length1,122468
definitionDH931517|Mus musculus domesticus DNA, BAC clone: B6Ng01-130B23, 5' end.DH931518|Mus musculus domesticus DNA, BAC clone: B6Ng01-130B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,851,583 - 106,852,705)(106,969,969 - 106,970,474)
sequence
gaattcttcattgccttggctcctctggaagctgctaaagttcgaattca
aacccagcctggttatgccaacacgttgagggaagctgttcccaaaatgg
atactgaggaaggcttaaatgcgttctacaagggtgttgctcctctgtgg
atgagacagaccccatacatcaggatgaagttcgcttgttttgaatgtat
gtggaaggggctcttcgccagaatcatcatgattggcactcggactatag
tggttcatctacgactctgtgaaggtctacttcaggcgccctcgccctcc
tccacctgagatgccagagtctctgaagaagcagcttgggttcactgagt
atatacatcaaaataacctggactgaattgcttgttgatcagtgttgaaa
atgcaaaggacatcttatatgttcgatagtgtaggaaatgtctgttcctg
atctaattactgtagtacccttgcttaaagcaagagtttcaaacttactg
ctaaataaacccatctatccatgaaaaaaaaagggggtaagcaagaacat
gactactgctgtggaagttggcccaacaaaaccaccattgaccacactac
gaaataggcctcacatagaatgacatgaaaaagagcatgccagtctggac
ggaaggccaatgtttctctccaatggaagtagaccttgcagtcatctaga
ccaacctgtggccagcaagcctcatgtggcttaggatggttatatctgtg
gtccaacacaaaattgtaaacttaatattctgagacttctactggagagt
gtttttcaagcaacttgtgtagttctccagctgacctttataaatgacaa
catgtcccaatgccacacattttttttttttcagttttggctctctaact
ccaaatttttatttagttatgaggaaagcagaaccattttgacagctatg
acatctgacctggctagaaatgaatgttgatataaggtctcatggtgtac
tcacgggcaccatattccaaacttttctgcaagcgtcaagtgcttcgtaa
ggagttttcactattcagagaaggctgagaatatggcactggctataatt
tatagctctcactcgacttgca

tttagtagacttggggagaaagaaccttttgctaggaacacagacatgat
gaagaactttaaaggaagttcactgaatataaggaacatgatataacatg
tgtttaaaagacctttattgagaaatacataaagaattctccatttttag
tattaaaaacattaatgataattttaaacaataactatacactgtgaatt
agaatgatgtggaagtaaagtaaaaggcaacatggagacataacagggtt
aaaagaaacaaaattatgctgcagtaaggtatattagttatgtgagtgta
gtaacataactggagataaacatatgcatttctaactaagaatgaatcac
atatgtaatagcaaagagatctaacacaagcaaagagatctaacccacaa
taaattgagtggttagaaataatggaaaggaaggaaggaaggaagggaag
gaagggaggggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_106851583_106852705
seq2: B6Ng01-130B23.b_42_1163

seq1  GAATTCTTCATTGCCTTGGCTCCTCTGGAAGCTGCTAAAGTTCGAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTGCCTTGGCTCCTCTGGAAGCTGCTAAAGTTCGAATTCA  50

seq1  AACCCAGCCTGGTTATGCCAACACGTTGAGGGAAGCTGTTCCCAAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCCTGGTTATGCCAACACGTTGAGGGAAGCTGTTCCCAAAATGG  100

seq1  ATACTGAGGAAGGCTTAAATGCGTTCTACAAGGGTGTTGCTCCTCTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGGAAGGCTTAAATGCGTTCTACAAGGGTGTTGCTCCTCTGTGG  150

seq1  ATGAGACAGACCCCATACATCAGGATGAAGTTCGCTTGTTTTGAATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACAGACCCCATACATCAGGATGAAGTTCGCTTGTTTTGAATGTAT  200

seq1  GTGGAAGGGGCTCTTCGCCAGAATCATCATGATTGGCACTCGGACTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGGGGCTCTTCGCCAGAATCATCATGATTGGCACTCGGACTATAG  250

seq1  TGGTTCATCTACGACTCTGTGAAGGTCTACTTCAGGCGCCCTCGCCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATCTACGACTCTGTGAAGGTCTACTTCAGGCGCCCTCGCCCTCC  300

seq1  TCCACCTGAGATGCCAGAGTCTCTGAAGAAGCAGCTTGGGTTCACTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGAGATGCCAGAGTCTCTGAAGAAGCAGCTTGGGTTCACTGAGT  350

seq1  ATATACATCAAAATAACCTGGACTGAATTGCTTGTTGATCAGTGTTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATCAAAATAACCTGGACTGAATTGCTTGTTGATCAGTGTTGAAA  400

seq1  ATGCAAAGGACATCTTATATGTTCGATAGTGTAGGAAATGTCTGTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGGACATCTTATATGTTCGATAGTGTAGGAAATGTCTGTTCCTG  450

seq1  ATCTAATTACTGTAGTACCCTTGCTTAAAGCAAGAGTTTCAAACTTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATTACTGTAGTACCCTTGCTTAAAGCAAGAGTTTCAAACTTACTG  500

seq1  CTAAATAAACCCATCTATCCATGAAAAAAAAAGGGGGTAAGCAAGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAACCCATCTATCCATGAAAAAAAAAGGGGGTAAGCAAGAACAT  550

seq1  GACTACTGCTGTGGAAGTTGGCCCAACAAAACCACCATTGACCACACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTGCTGTGGAAGTTGGCCCAACAAAACCACCATTGACCACACTAC  600

seq1  GAAATAGGCCTCACATAGAATGACATGAAAAAGAGCATGCCAGTCTGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGGCCTCACATAGAATGACATGAAAAAGAGCATGCCAGTCTGGAC  650

seq1  GGAAGGCCAATGTTTCTCTCCAATGGAAGTAGACCTTGCAGTCATCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCCAATGTTTCTCTCCAATGGAAGTAGACCTTGCAGTCATCTAGA  700

seq1  CCAACCTGTGGCCAGCAAGCCTCATGTGGCTTAGGATGGTTATATCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGTGGCCAGCAAGCCTCATGTGGCTTAGGATGGTTATATCTGTG  750

seq1  GTCCAACACAAAATTGTAAACTTAATATTCTGAGACTTCTACTGGAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACACAAAATTGTAAACTTAATATTCTGAGACTTCTACTGGAGAGT  800

seq1  GTTTTTCAAGCAACTTGTGTAGTTCTCCAGCTGACCTTTATAAATGACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAAGCAACTTGTGTAGTTCTCCAGCTGACCTTTATAAATGACAA  850

seq1  CATGTCCCAATGCCACACA-TTTTTTTTTTTCAGTTTTGGCTCTCTAACT  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATGTCCCAATGCCACACATTTTTTTTTTTTCAGTTTTGGCTCTCTAACT  900

seq1  CCAAATTTTTATTTAGTTATGAGGAAAGCAGAACCATTTTGACAGCTATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTTTATTTAGTTATGAGGAAAGCAGAACCATTTTGACAGCTATG  950

seq1  ACATCTGACCTGGCTTAGAAATTGAATGTTGATATAAGGTCTCATGGTGT  999
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  ACATCTGACCTGGC-TAGAAA-TGAATGTTGATATAAGGTCTCATGGTGT  998

seq1  ACTCACGGGCACCATA-TCCAAAC-TCTCTGCAAGCCGTCAAGTGCTCGG  1047
      |||||||||||||||| ||||||| | |||||||| |||||||||||  |
seq2  ACTCACGGGCACCATATTCCAAACTTTTCTGCAAG-CGTCAAGTGCTTCG  1047

seq1  TTAAAGAGTTTTCACTA-TCAGAGAAGCCTGGAGATATGGGCACTGGCTA  1096
       ||| |||||||||||| ||||||||| |||   |||| |||||||||||
seq2  -TAAGGAGTTTTCACTATTCAGAGAAGGCTGAGAATAT-GGCACTGGCTA  1095

seq1  T-ATTTATAGCTCTCACTCAGACTTGCA  1123
      | ||||||||||||||||| ||||||||
seq2  TAATTTATAGCTCTCACTC-GACTTGCA  1122


seq1: chr2_106969969_106970474
seq2: B6Ng01-130B23.g_71_544 (reverse)

seq1  CCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC  50
                                      ||||||||   |||||||
seq2  --------------------------------CCTCCCTC---CCCTCCC  15

seq1  TTCCTT-CCTTCCTTCCTTCCTTCCTTTCCATTATTTCTAA-CACTCAAT  98
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCCTTCCCTTCCTTCCTTCCTTCCTTTCCATTATTTCTAACCACTCAAT  65

seq1  TTATTGT-GGTTAGATCTCTTTGCTTGTGTTAGATCTCTTTGCTATTACA  147
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGGGTTAGATCTCTTTGCTTGTGTTAGATCTCTTTGCTATTACA  115

seq1  TATGTGATTCATTCTTAGTTAGAAATGCATATGTTTATCTCCAGTTATGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATTCATTCTTAGTTAGAAATGCATATGTTTATCTCCAGTTATGT  165

seq1  TACTACACTCACATAACTAATATACCTTACTGCAGCATAATTTTGTTTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACACTCACATAACTAATATACCTTACTGCAGCATAATTTTGTTTCT  215

seq1  TTTAACCCTGTTATGTCTCCATGTTGCCTTTTACTTTACTTCCACATCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCCTGTTATGTCTCCATGTTGCCTTTTACTTTACTTCCACATCAT  265

seq1  TCTAATTCACAGTGTATAGTTATTGTTTAAAATTATCATTAATGTTTTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCACAGTGTATAGTTATTGTTTAAAATTATCATTAATGTTTTTA  315

seq1  ATACTAAAAATGGAGAATTCTTTATGTATTTCTCAATAAAGGTCTTTTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAAAATGGAGAATTCTTTATGTATTTCTCAATAAAGGTCTTTTAA  365

seq1  ACACATGTTATATCATGTTCCTTATATTCAGTGAACTTCCTTTAAAGTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTTATATCATGTTCCTTATATTCAGTGAACTTCCTTTAAAGTTC  415

seq1  TTCATCATGTCTGTGTTCCTAGCAAAAGGTTCTTTCTCCCCAAGTCTACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATGTCTGTGTTCCTAGCAAAAGGTTCTTTCTCCCCAAGTCTACT  465

seq1  AAAGAATTC  506
      |||||||||
seq2  AAAGAATTC  474


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