BAC Information

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BAC

Clone NameB6Ng01-130F07
Chromosome2 (Build37)
Map Location 145,232,098 - 145,342,269
singlet/doubletdoublet
Overlap geneSlc24a3, LOC627312
Upstream geneCsrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneOTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130F07.bB6Ng01-130F07.g
ACCDH931675DH931676
length1,123986
definitionDH931675|Mus musculus domesticus DNA, BAC clone: B6Ng01-130F07, 5' end.DH931676|Mus musculus domesticus DNA, BAC clone: B6Ng01-130F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,341,125 - 145,342,269)(145,232,098 - 145,233,089)
sequence
gaattcaaggccagcttgatctatacagtgaattccaggacagccagggc
tgcacacagagaccctgttttgaaaaaccaaaccaaaccaaccaaccaac
caactaaacaaacaaccctccacccccaaacccaaaacaaccacaataga
aagagttggatcggtttgatccaaggttgaatgcctggctgtggaaccta
tatggagaaggtggaatgttgtgggttactcagtggtttctaagcccaca
aatggccagagccgggctgtgcactccctagtttccttcccagcctttgg
caagcagcttagctgaggaagagcctagctcagtgtttacagtacttaga
gtgggcagtctctctcccccacagcccaggaggccccattactgctttca
tggcttcctgggtgtcctactcttgacatctgatatccttgtgcaagcaa
aaccttctgaccaacctcaggctgctatctcatgaccaagaacgccgcca
cggtcctccccttgctgagtcttcacttgttggctctttctgaaacatct
ttctgtctttgctttagtgtagcagagtctgagtctgtctatttactgtt
gacaaaggactctaacacctttgtgggttccctcatgcaacctcatgact
gtctaaaatttagtgactcacctggcctgttgctgccatattggctcctt
tctcttttctgcttaacgtttttttcctggtttgaacttgatccccctcc
aagctatgacttattgcacaatgtggatttctttctagaatcatttttca
ccaaagtctaaacagcatctccttgaacatctccgtttagcccaagttaa
tctgagagcaagctctgagcatacactatcacctctctgtaaagggatta
gggaaagaaagatggtatagagtcccatgctaggaaatcctgctaagctg
cagaggtggttctgtatcaccaccaccctcatcctgtgaaagaatggaac
ttcagagtggcacaggctcctcgaagacaacacgctctcaaggagataca
accttgctcagcagcatgagtcagcactagatggcttagtcatgggctgc
acttcagagaagcatggggcatg
gaattcagcatctgcatgatttcagatagccatgaaggtcttctattccc
ctgacgataagttgtggctactgtgtatcatgaggaactgcaaagcaaga
atattgaagacaagagtttgtcccaaagccatgtctcagaagcacagccc
catcactggcacaatcacttgtcatcagtgaattccagtgggttggataa
atgactagaggccttgctggccccacaccagttgtctttgggaagcaaaa
cactatccacgttctggctgataacttggtttcttctctaggaaggatta
aaaaaaaataataaaagcactcttagcatgtcttgggtttctagagtggt
gtagaatatgccaggtttctaacagactgacacaggcctggttcagtgac
tagtcgctcccaagtagaaagttgaaagcggtcagaggatcatcacgcct
gtcatcttaggcttgcactagaagtagccgcacatgcagcttcttttcct
tcatttagtcatgtgctgttattaggaacatccgaggttcaacacatcct
caggctggtcctttgctaccagcatcttccctttcatccattttgcacgt
ggctttacagcttgctttgtacttggcatgcatctgtactcctgggagga
ggcagcttatctaaaggttctcttggcatcgcctccagggcttcctagac
gttgcactctctcctcacagatctggaatgggaggaggtataagctgctc
ttcctgacactgccttcaactggtttccccaagaggcagagagttatgtg
gtagtggcttattcgggaagcgatccaggaaacttcaatgggtttctggc
aaggaaaggatgtggtacggtaacaagcagtttttgtcatggataattag
cactcagtccccctaaagagctcaagatgtggagtccatgaagtaggcta
tagtttttatctcagtcttagccattctgtcattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145341125_145342269
seq2: B6Ng01-130F07.b_48_1170 (reverse)

seq1  CATGCCCCATGCCTATCTCTG-AGTGCAGCTCCATGTACTTAAAGCCATC  49
      ||||||||||||   |||||| |||||||| ||||| |||  ||||||| 
seq2  CATGCCCCATGC--TTCTCTGAAGTGCAGC-CCATG-ACT--AAGCCAT-  43

seq1  CTAGTTGCTGGACTCATGGCATGCCTGGAGCAAAGTTTGTATCTCCTTTG  99
      |||| |||| ||||||||   |||   |||| ||| |||||||||| |||
seq2  CTAG-TGCT-GACTCATG--CTGC--TGAGC-AAGGTTGTATCTCC-TTG  85

seq1  AGAGCTGTGTTTGTCTTCTGAGAGCCTGTGGCCAACTCTGAAGTTCCATT  149
      ||||| ||| ||||||||   |||||||||  | ||||||||||||||||
seq2  AGAGC-GTG-TTGTCTTCGAGGAGCCTGTG--CCACTCTGAAGTTCCATT  131

seq1  CTTTCACAGGATGGAGGGTGGTGGTGATACAGGACCACCCTCTTGCAGCT  199
      |||||||||||| ||||||||||||||||||| |||| |||| |||||||
seq2  CTTTCACAGGAT-GAGGGTGGTGGTGATACAGAACCA-CCTC-TGCAGCT  178

seq1  TAGCAGGATTTCCTAGCCTGGGACTCTATACCATCTTTTCTTTCCCTAAT  249
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  TAGCAGGATTTCCTAGCATGGGACTCTATACCATC-TTTCTTTCCCTAAT  227

seq1  CCCTTTACAGAGAGGTGATAGTGTATGCTCAGAGCTTGCTCTCAGATTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACAGAGAGGTGATAGTGTATGCTCAGAGCTTGCTCTCAGATTAA  277

seq1  CTTGGGCTAAACGGAGATGTTCAAGGAGATGCTGTTTAGACTTTGGTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTAAACGGAGATGTTCAAGGAGATGCTGTTTAGACTTTGGTGAA  327

seq1  AAATGATTCTAGAAAGAAATCCACATTGTGCAATAAGTCATAGCTTGGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTCTAGAAAGAAATCCACATTGTGCAATAAGTCATAGCTTGGAG  377

seq1  GGGGATCAAGTTCAAACCAGGAAAAAAACGTTAAGCAGAAAAGAGAAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCAAGTTCAAACCAGGAAAAAAACGTTAAGCAGAAAAGAGAAAGG  427

seq1  AGCCAATATGGCAGCAACAGGCCAGGTGAGTCACTAAATTTTAGACAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATATGGCAGCAACAGGCCAGGTGAGTCACTAAATTTTAGACAGTC  477

seq1  ATGAGGTTGCATGAGGGAACCCACAAAGGTGTTAGAGTCCTTTGTCAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTTGCATGAGGGAACCCACAAAGGTGTTAGAGTCCTTTGTCAACA  527

seq1  GTAAATAGACAGACTCAGACTCTGCTACACTAAAGCAAAGACAGAAAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAGACAGACTCAGACTCTGCTACACTAAAGCAAAGACAGAAAGAT  577

seq1  GTTTCAGAAAGAGCCAACAAGTGAAGACTCAGCAAGGGGAGGACCGTGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAAAGAGCCAACAAGTGAAGACTCAGCAAGGGGAGGACCGTGGC  627

seq1  GGCGTTCTTGGTCATGAGATAGCAGCCTGAGGTTGGTCAGAAGGTTTTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTCTTGGTCATGAGATAGCAGCCTGAGGTTGGTCAGAAGGTTTTGC  677

seq1  TTGCACAAGGATATCAGATGTCAAGAGTAGGACACCCAGGAAGCCATGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAAGGATATCAGATGTCAAGAGTAGGACACCCAGGAAGCCATGAA  727

seq1  AGCAGTAATGGGGCCTCCTGGGCTGTGGGGGAGAGAGACTGCCCACTCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAATGGGGCCTCCTGGGCTGTGGGGGAGAGAGACTGCCCACTCTA  777

seq1  AGTACTGTAAACACTGAGCTAGGCTCTTCCTCAGCTAAGCTGCTTGCCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGTAAACACTGAGCTAGGCTCTTCCTCAGCTAAGCTGCTTGCCAA  827

seq1  AGGCTGGGAAGGAAACTAGGGAGTGCACAGCCCGGCTCTGGCCATTTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGAAGGAAACTAGGGAGTGCACAGCCCGGCTCTGGCCATTTGTG  877

seq1  GGCTTAGAAACCACTGAGTAACCCACAACATTCCACCTTCTCCATATAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGAAACCACTGAGTAACCCACAACATTCCACCTTCTCCATATAGG  927

seq1  TTCCACAGCCAGGCATTCAACCTTGGATCAAACCGATCCAACTCTTTCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGCCAGGCATTCAACCTTGGATCAAACCGATCCAACTCTTTCTA  977

seq1  TTGTGGTTGTTTTGGGTTTGGGGGTGGAGGGTTGTTTGTTTAGTTGGTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTGTTTTGGGTTTGGGGGTGGAGGGTTGTTTGTTTAGTTGGTTG  1027

seq1  GTTGGTTGGTTTGGTTTGGTTTTTCAAAACAGGGTCTCTGTGTGCAGCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGGTTTGGTTTGGTTTTTCAAAACAGGGTCTCTGTGTGCAGCCC  1077

seq1  TGGCTGTCCTGGAATTCACTGTATAGATCAAGCTGGCCTTGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAATTCACTGTATAGATCAAGCTGGCCTTGAATTC  1123

seq1: chr2_145232098_145233089
seq2: B6Ng01-130F07.g_68_1053

seq1  GAATTCAGCATCTGCATGATTTCAGATAGCCATGAAGGTCTTCTATTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATCTGCATGATTTCAGATAGCCATGAAGGTCTTCTATTCCC  50

seq1  CTGACGATAAGTTGTGGCTACTGTGTATCATGAGGAACTGCAAAGCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGATAAGTTGTGGCTACTGTGTATCATGAGGAACTGCAAAGCAAGA  100

seq1  ATATTGAAGACAAGAGTTTGTCCCAAAGCCATGTCTCAGAAGCACAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAAGACAAGAGTTTGTCCCAAAGCCATGTCTCAGAAGCACAGCCC  150

seq1  CATCACTGGCACAATCACTTGTCATCAGTGAATTCCAGTGGGTTGGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGGCACAATCACTTGTCATCAGTGAATTCCAGTGGGTTGGATAA  200

seq1  ATGACTAGAGGCCTTGCTGGCCCCACACCAGTTGTCTTTGGGAAGCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAGAGGCCTTGCTGGCCCCACACCAGTTGTCTTTGGGAAGCAAAA  250

seq1  CACTATCCACGTTCTGGCTGATAACTTGGTTTCTTCTCTAGGAAGGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCCACGTTCTGGCTGATAACTTGGTTTCTTCTCTAGGAAGGATTA  300

seq1  AAAAAAAATAATAAAAGCACTCTTAGCATGTCTTGGGTTTCTAGAGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATAATAAAAGCACTCTTAGCATGTCTTGGGTTTCTAGAGTGGT  350

seq1  GTAGAATATGCCAGGTTTCTAACAGACTGACACAGGCCTGGTTCAGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATATGCCAGGTTTCTAACAGACTGACACAGGCCTGGTTCAGTGAC  400

seq1  TAGTCGCTCCCAAGTAGAAAGTTGAAAGCGGTCAGAGGATCATCACGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGCTCCCAAGTAGAAAGTTGAAAGCGGTCAGAGGATCATCACGCCT  450

seq1  GTCATCTTAGGCTTGCACTAGAAGTAGCCGCACATGCAGCTTCTTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTAGGCTTGCACTAGAAGTAGCCGCACATGCAGCTTCTTTTCCT  500

seq1  TCATTTAGTCATGTGCTGTTATTAGGAACATCCGAGGTTCAACACATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGTCATGTGCTGTTATTAGGAACATCCGAGGTTCAACACATCCT  550

seq1  CAGGCTGGTCCTTTGCTACCAGCATCTTCCCTTTCATCCATTTTGCACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGTCCTTTGCTACCAGCATCTTCCCTTTCATCCATTTTGCACGT  600

seq1  GGCTTTACAGCTTGCTTTGTACTTGGCATGCATCTGTACTCCTGGGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTACAGCTTGCTTTGTACTTGGCATGCATCTGTACTCCTGGGAGGA  650

seq1  GGCAGCTTATCTAAAGGTTCTCTTGGCATCGCCTCCAGGGCTTCCTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTTATCTAAAGGTTCTCTTGGCATCGCCTCCAGGGCTTCCTAGAC  700

seq1  GTTGCACTCTCTCCTCACAGATCTGGAATGGGAGGAGGTATAAGCTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACTCTCTCCTCACAGATCTGGAATGGGAGGAGGTATAAGCTGCTC  750

seq1  TTCCTGACACTGCCTTCAACTGGTTTCCCCAAGAGGCAGAGAGTTATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACACTGCCTTCAACTGGTTTCCCCAAGAGGCAGAGAGTTATGTG  800

seq1  GTAGTGGCTTATTCGGGAAGCGATCCAGGAAACTTCAATGGGTTTCTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGCTTATTCGGGAAGCGATCCAGGAAACTTCAATGGGTTTCTGGC  850

seq1  AAGGAAAGGATGTGGTACGGTAACAAGCAGGTTTTTGTCATGGATAATTA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGGAAAGGATGTGGTACGGTAACAAGCA-GTTTTTGTCATGGATAATTA  899

seq1  GCACTCAGTCCCCCTAAAGAGCTCAAGGATGTGGAGTCCATGAAGTAGGC  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCACTCAGTCCCCCTAAAGAGCTCAA-GATGTGGAGTCCATGAAGTAGGC  948

seq1  TATAGGTTTTTATCCTCAAGTTCTTAGCCCATCTGTCATTGG  992
      |||| |||||||| ||||   ||||||||  |||||||||||
seq2  TATA-GTTTTTAT-CTCA--GTCTTAGCCATTCTGTCATTGG  986