BAC Information

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BAC

Clone NameB6Ng01-130M02
Chromosome2 (Build37)
Map Location 34,024,159 - 34,195,000
singlet/doubletdoublet
Overlap genePbx3
Upstream geneRalgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
Downstream geneLOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130M02.bB6Ng01-130M02.g
ACCDH931988DH931989
length1,1461,062
definitionDH931988|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M02, 5' end.DH931989|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,024,159 - 34,025,306)(34,193,930 - 34,195,000)
sequence
gaattcacatagaagctaggcaggcacggcagcctacacagaagctttag
ggagagaccctgcctcaataaataaggtggaaagccatcaaaagaagacg
cttggtgtcaacttcagacctccacacatatacatacacaggtaggtgta
aatacacctgtgtacatatgaacacccacatgtatggaaacacacacaca
caccccacatacaaaaaataagaatttcaggttgtgctcagacacaccca
gacctaaaatttggccaagtgtttttcaacttttacagtcctcagccttg
gcggggtggcatcccttctttgagccttagattccctttatgaaaatgga
tggccatggtagctgctctagtaactgaggtgtgataaacacaataatgg
gggtgtgtggtgttgcctatgttaaagctcatgagagcaaagggcaagag
cctggagggctgtaggtagaactgacaagaattgggcagatcctgggacc
tgaagacaccgtgagggcacagagttcaggcacagaacctctgcagcaat
agaggtcccatagtggtcatgtcccagcgctgtgctcgctcactggctgc
cttaagaaagtgctctacctatcactagtcatggtgcccggcctgaccca
gccccagagcactgattctatcagtcatcgtttaacttggtgatgcagac
aagtgacatcacacaatgtgccctcatcacatatacctcagtacattcgg
atatgaatcacgattcttgtaaagtctaaggggacagggaaggatgctcc
tggcttctttatcccagaaaggaccttacacagaggcataatggctatca
ttcactggggactctgtttccttccaccagtggtagctggaaagttagta
atactgacttagatatgagagatgtttaattagcagaggccatgtgtcca
accaaggtggttccttcccaagtatggcacacatttacacacccccccat
ccccatatctaggaagccatcctgacatgactttccacaaagaaaagact
tttctagtacacagcctctccattcagagaaaagggacatgtttcttctg
tgaatgacacccctgcttgaaatggacagctgtctggggtgtggag
gaattctttctgccttcctccgtttttctttccatttggcactcttagga
tgaacacacatacgttcttgcaggctccttcctttttcttcttttcatat
tttccatgtgcagcctctttttgtagctttgtaagtgagtgtatgcttgc
acaggtgctctgccactgtactgcaccctcagccagtgtttccatagaga
tttccttgaattctataaacctaaataaaggaaaaaataaaaaaaagaga
aatagaataaaaaagaaataaagaattttgtctttatagattgtctctgc
ggttcttttattgcttagcttggctaagcgctctactctaatgttttgtt
tgcttctctgcctgtgcttagctccttatcagtcagaagtgagagcattc
ttgagtctttcaaagggctgatgtgcctttagcaagcatgatactttcta
agttctaaagtgcgggcagtgcttgagaagccctttttttcccgggcaag
gtattgcccagcctttgctgctttgtaagcttgtgcccagtcttcctttt
cttaaaaacatatttgggaggaatttcccatttttctgtttgagtgactt
ctgcattaggtgaaacaaacccgaaccattatttagtttttcagataggt
cccagaaggtcagaacaaacaagctcttctgttctgctctttcggtacta
ggggtcagcatcccacctaacactcagtaaggttggtagattgggaggga
gtgtatgcatgctaagaagctatcctcctgttttgtgtagccctagttgt
ttatatatatatttcattatttggttgctttaaagctttatcttccagag
ttctggatttgatttggccagtttaatttgacattttgaagttactgagg
aagtctgactcttggtgctgctctgtatttctgctgctgtctgaaactgg
gttcagttttaaataaaaaaaaaaaaaagatttattacttattttataat
atgtggagtacatgtcgctctcttcagatacacagagagggcatcaagat
ccaattcagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34024159_34025306
seq2: B6Ng01-130M02.b_48_1193

seq1  GAATTCACATAGAAGCTAGGCAGGCACGGCAGCCTACACAGAAGCTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAGAAGCTAGGCAGGCACGGCAGCCTACACAGAAGCTTTAG  50

seq1  GGAGAGACCCTGCCTCAATAAATAAGGTGGAAAGCCATCAAAAGAAGACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGACCCTGCCTCAATAAATAAGGTGGAAAGCCATCAAAAGAAGACG  100

seq1  CTTGGTGTCAACTTCAGACCTCCACACATATACATACACAGGTAGGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGTCAACTTCAGACCTCCACACATATACATACACAGGTAGGTGTA  150

seq1  AATACACCTGTGTACATATGAACACCCACATGTATGGAAACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACCTGTGTACATATGAACACCCACATGTATGGAAACACACACACA  200

seq1  CACCCCACATACAAAAAATAAGAATTTCAGGTTGTGCTCAGACACACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACATACAAAAAATAAGAATTTCAGGTTGTGCTCAGACACACCCA  250

seq1  GACCTAAAATTTGGCCAAGTGTTTTTCAACTTTTACAGTCCTCAGCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAAATTTGGCCAAGTGTTTTTCAACTTTTACAGTCCTCAGCCTTG  300

seq1  GCGGGGTGGCATCCCTTCTTTGAGCCTTAGATTCCCTTTATGAAAATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGTGGCATCCCTTCTTTGAGCCTTAGATTCCCTTTATGAAAATGGA  350

seq1  TGGCCATGGTAGCTGCTCTAGTAACTGAGGTGTGATAAACACAATAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATGGTAGCTGCTCTAGTAACTGAGGTGTGATAAACACAATAATGG  400

seq1  GGGTGTGTGGTGTTGCCTATGTTAAAGCTCATGAGAGCAAAGGGCAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGTGGTGTTGCCTATGTTAAAGCTCATGAGAGCAAAGGGCAAGAG  450

seq1  CCTGGAGGGCTGTAGGTAGAACTGACAAGAATTGGGCAGATCCTGGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGGCTGTAGGTAGAACTGACAAGAATTGGGCAGATCCTGGGACC  500

seq1  TGAAGACACCGTGAGGGCACAGAGTTCAGGCACAGAACCTCTGCAGCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACCGTGAGGGCACAGAGTTCAGGCACAGAACCTCTGCAGCAAT  550

seq1  AGAGGTCCCATAGTGGTCATGTCCCAGCGCTGTGCTCGCTCACTGGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCCATAGTGGTCATGTCCCAGCGCTGTGCTCGCTCACTGGCTGC  600

seq1  CTTAAGAAAGTGCTCTACCTATCACTAGTCATGGTGCCCGGCCTGACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAAGTGCTCTACCTATCACTAGTCATGGTGCCCGGCCTGACCCA  650

seq1  GCCCCAGAGCACTGATTCTATCAGTCATCGTTTAACTTGGTGATGCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAGCACTGATTCTATCAGTCATCGTTTAACTTGGTGATGCAGAC  700

seq1  AAGTGACATCACACAATGTGCCCTCATCACATATACCTCAGTACATTCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACATCACACAATGTGCCCTCATCACATATACCTCAGTACATTCGG  750

seq1  ATATGAATCACGATTCTTGTAAAGTCTAAGGGGACAGGGAAGGATGCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATCACGATTCTTGTAAAGTCTAAGGGGACAGGGAAGGATGCTCC  800

seq1  TGGCTTCTTTATCCCAGAAAGGACCTTACACAGAGGCATAATGGCTATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTTATCCCAGAAAGGACCTTACACAGAGGCATAATGGCTATCA  850

seq1  TTCACTGGGGACTCTGTTTCCTTCCACCAGTGGTAGCTGGAAAGTTAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGGGACTCTGTTTCCTTCCACCAGTGGTAGCTGGAAAGTTAGTA  900

seq1  ATACTGACTTAGATATGAGAGATGTTTAATTAGCAGAGGCCATGTGTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACTTAGATATGAGAGATGTTTAATTAGCAGAGGCCATGTGTCCA  950

seq1  ACCAAGGTGGTTCCTTCCCAAGGTATGGCACACATTTACACACCCCCCCA  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACCAAGGTGGTTCCTTCCCAA-GTATGGCACACATTTACACACCCCCCCA  999

seq1  TCCCCATATCTAGGAAGCCAATCCTGACATGACTTTCCACATAG-AAAGA  1049
      ||||||||||||||||||| ||||||||||||||||||||| || |||||
seq2  TCCCCATATCTAGGAAGCC-ATCCTGACATGACTTTCCACAAAGAAAAGA  1048

seq1  CTTTTCTAGTACACAGCCTCTCCAATTCAGAGAAAAGGGACATGGTGTCT  1099
      ||||||||||||||||||||||| ||||||||||||||||||| || |||
seq2  CTTTTCTAGTACACAGCCTCTCC-ATTCAGAGAAAAGGGACAT-GTTTCT  1096

seq1  TCGTGTGAATGACA-CCCTGCTAGAAATGAGCAGCTG-CTGGGGTGTGGA  1147
      || ||||||||||| ||||||| ||||||  |||||| ||||||||||||
seq2  TC-TGTGAATGACACCCCTGCTTGAAATGGACAGCTGTCTGGGGTGTGGA  1145

seq1  G  1148
      |
seq2  G  1146

seq1: chr2_34193930_34195000
seq2: B6Ng01-130M02.g_68_1129 (reverse)

seq1  CATCTGAAATGGGATC-TGATGCCCTCTTCTGGTGTATCTGAAGAGAGCG  49
      |||||| ||| ||||| |||||||||| ||| ||||||||||||||||||
seq2  CATCTG-AATTGGATCTTGATGCCCTC-TCT-GTGTATCTGAAGAGAGCG  47

seq1  ACAATGTACT-CACATA-TATAAAATAAGTAAATAAATCTTTTTTTTTTT  97
      || ||||||| |||||| |||||||||||| |||||||||||||||||||
seq2  AC-ATGTACTCCACATATTATAAAATAAGT-AATAAATCTTTTTTTTTTT  95

seq1  TTATTTAAAAACTGAACCCCAGTTTCCAGAACAGCAGCAAGAAATACAGG  147
      ||  || ||||||||| |||||||| ||| |||||||| |||||||||| 
seq2  TTTATTTAAAACTGAA-CCCAGTTT-CAG-ACAGCAGC-AGAAATACAG-  140

seq1  AAGCAGCACCAAGAGTCAGACCTTCCTCAGTAACTTCAAAATGTCAAATT  197
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  -AGCAGCACCAAGAGTCAGA-CTTCCTCAGTAACTTCAAAATGTCAAATT  188

seq1  AAACTGGCCAAATCAAATCCAGAACTCTGGAAGATAAAGCTTTAAAGCAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGCCAAATCAAATCCAGAACTCTGGAAGATAAAGCTTTAAAGCAA  238

seq1  CCAAATAATGAAATATATATATAAACAACTAGGGCTACACAAAACAGGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAATGAAATATATATATAAACAACTAGGGCTACACAAAACAGGAG  288

seq1  GATAGCTTCTTAGCATGCATACACTCCCTCCCAATCTACCAACCTTACTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTTCTTAGCATGCATACACTCCCTCCCAATCTACCAACCTTACTG  338

seq1  AGTGTTAGGTGGGATGCTGACCCCTAGTACCGAAAGAGCAGAACAGAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGGTGGGATGCTGACCCCTAGTACCGAAAGAGCAGAACAGAAGA  388

seq1  GCTTGTTTGTTCTGACCTTCTGGGACCTATCTGAAAAACTAAATAATGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTGTTCTGACCTTCTGGGACCTATCTGAAAAACTAAATAATGGT  438

seq1  TCGGGTTTGTTTCACCTAATGCAGAAGTCACTCAAACAGAAAAATGGGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTTTGTTTCACCTAATGCAGAAGTCACTCAAACAGAAAAATGGGAA  488

seq1  ATTCCTCCCAAATATGTTTTTAAGAAAAGGAAGACTGGGCACAAGCTTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCCCAAATATGTTTTTAAGAAAAGGAAGACTGGGCACAAGCTTAC  538

seq1  AAAGCAGCAAAGGCTGGGCAATACCTTGCCCGGGAAAAAAAGGGCTTCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCAAAGGCTGGGCAATACCTTGCCCGGGAAAAAAAGGGCTTCTC  588

seq1  AAGCACTGCCCGCACTTTAGAACTTAGAAAGTATCATGCTTGCTAAAGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGCCCGCACTTTAGAACTTAGAAAGTATCATGCTTGCTAAAGGC  638

seq1  ACATCAGCCCTTTGAAAGACTCAAGAATGCTCTCACTTCTGACTGATAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCCCTTTGAAAGACTCAAGAATGCTCTCACTTCTGACTGATAAG  688

seq1  GAGCTAAGCACAGGCAGAGAAGCAAACAAAACATTAGAGTAGAGCGCTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAGCACAGGCAGAGAAGCAAACAAAACATTAGAGTAGAGCGCTTA  738

seq1  GCCAAGCTAAGCAATAAAAGAACCGCAGAGACAATCTATAAAGACAAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTAAGCAATAAAAGAACCGCAGAGACAATCTATAAAGACAAAAT  788

seq1  TCTTTATTTCTTTTTTATTCTATTTCTCTTTTTTTTATTTTTTCCTTTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTCTTTTTTATTCTATTTCTCTTTTTTTTATTTTTTCCTTTAT  838

seq1  TTAGGTTTATAGAATTCAAGGAAATCTCTATGGAAACACTGGCTGAGGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTATAGAATTCAAGGAAATCTCTATGGAAACACTGGCTGAGGGT  888

seq1  GCAGTACAGTGGCAGAGCACCTGTGCAAGCATACACTCACTTACAAAGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACAGTGGCAGAGCACCTGTGCAAGCATACACTCACTTACAAAGCT  938

seq1  ACAAAAAGAGGCTGCACATGGAAAATATGAAAAGAAGAAAAAGGAAGGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGAGGCTGCACATGGAAAATATGAAAAGAAGAAAAAGGAAGGAG  988

seq1  CCTGCAAGAACGTATGTGTGTTCATCCTAAGAGTGCCAAATGGAAAGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGAACGTATGTGTGTTCATCCTAAGAGTGCCAAATGGAAAGAAA  1038

seq1  AACGGAGGAAGGCAGAAAGAATTC  1071
      ||||||||||||||||||||||||
seq2  AACGGAGGAAGGCAGAAAGAATTC  1062