BAC Information

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BAC

Clone NameB6Ng01-130M13
Chromosome2 (Build37)
Map Location 126,991,185 - 127,127,702
singlet/doubletdoublet
Overlap gene1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7
Upstream geneAtp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik
Downstream geneDusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130M13.bB6Ng01-130M13.g
ACCDH932010DH932011
length1,1051,080
definitionDH932010|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M13, 5' end.DH932011|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,126,580 - 127,127,702)(126,991,185 - 126,992,273)
sequence
gaattcactctaagccaccagtacgacttaccatggaagtgcacaatcta
gggagagctctgtgttcgcctttcaggacatgctgcacttgaagaccatg
ctacagtaaactcaccctgagatgctcatgcctgggctgggctaggggta
tctgctcaggctccaggagtttagaaaaattagcaggtgtagccaagttt
aaggtgatgttatattacaaagagtaggtggatgctctagatttaaaaaa
tggataaagctgggctggctagcttgtccaatgggtaaaagtgcttgcct
ccaagcctgacaaccgtagttcaatcctcagaacacacatgactgagaaa
ctggcttctggagttgtcctcagcatgcatgctatgggacatatgactcc
cccaccacaatgaatataaaaaaaaaattaatgagtaaaaagacaaatgt
aacacataatacttagatagagggcattgggaactgtaagtcatttgggg
gtcaaatagggaacttttaacatgagctgcattactaggtgagactactg
gggagagcaagatggttcagtagtggcttgctgtgcaagtctcctaggat
gaacctgatgttcatccctagaacccagagaaaggtggaaggagagatcc
aagtacagagttatcctctgtcttccatacttatgccatggaacacatgc
ctctcccactgtatctctctctatctcacacacacacacacacacacaca
cacacacacacacacacacacacacacactggcatctgtattactaaaag
gatgttctctgtggtcttatgtgggcgtggggagcatgcttgtcacttgt
tttcaacaatcttgaaaagcgtatgcagagaaagtactcccatcctccca
tcagcttctcagcctcggaggagtgatgcaaggttctgaggtctggtgta
gtttgaatgtgtcagtcccctcagcatgtctgaacacttgttccagttgt
ggtgctgttggaaagctgtggtatcttagggggcaaaacccattgaagaa
atgagtcttaaggagggcttgcaggtttaaaagccgcccccagttcccat
cactg
gaattccagagtgttcagggatataggaatacttcacagagcaggggctg
gtacttactgcaaagaaatagaatgagaaaggactgaaaactctaagcag
gccttgtactcattagggaaagctggaagtgacagtctttagcaggggcg
tttggaagcattagggatataattgctcctcccattttcataggacggct
tcagttgagacagctttcatttgtgatgatctcctggccaagcccagatt
ttctacacgtacacactgcatttacttttagtaaaaagattcgagaataa
tatgtaactttttgaggccttttaaatgacaaaacataagcagggtcaga
tattctgcattgtgatgaagaggaagtgacaaaaatgtcgaaagacagaa
tcccctgggatatgctgaggtcactgtgttctcttgcatgaatgttaact
cctttcttatcgtgctgtctctatttgaatgcctgctgtggctctgggtt
ttgaatatggcttccttttcagttgtgaaactaggttttctggaaatgtc
aaatctgttttgaaggtttttaagtactgagtgactgattggaacttgat
gattctgagaagtggagttttattgttgaagcaaatactgtctttggtca
tcatgagtcatttccatctattagtctagtctttatgtacccatgcatcc
ttgtggccttcaggccaaacatttacagtgtttggaggaagccacaaact
ccctctaacctaagccctgctggctgtaagacagcaataaaatctatagt
agatctctctactatattctgatgcttgcattgactctgaaatatttttt
tctgtgaccatgaatgttatatactaatgggggaactttagcttttttgg
agaaggctgaatctacattcctggcatggtcactcactttagcttcaata
cctgttccttctttcttgggggaagatctgtattttaacttaacaacttc
aaccactagatgtccggctgtcctggaaattgctctgtggccattttaat
gaaattaacgacaggcagctctaatcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_127126580_127127702
seq2: B6Ng01-130M13.b_45_1149 (reverse)

seq1  CAGTGAATGGGAACTGGGGCTGGCTTTTTAAACCTCAAGGCCCTCCCTCA  50
      ||||| |||||||||||||  ||| ||||||||||  | ||||||| |  
seq2  CAGTG-ATGGGAACTGGGGGCGGC-TTTTAAACCTGCAAGCCCTCCTT--  46

seq1  ATGACTCACTTCCTCCAATGGGTTTTTGCCCCCCTAAAGATACCACAGCC  100
      | |||||| || || ||||||| ||||||||||   ||||||||||||| 
seq2  AAGACTCA-TTTCTTCAATGGG-TTTTGCCCCC--TAAGATACCACAGCT  92

seq1  TTCCCAAACAGCACCACCAACTGGAACCAAGTGTTCAGACACTGCTGAGG  150
      ||||  |||||||||| ||||||||| |||||||||||||| |||||| |
seq2  TTCC--AACAGCACCA-CAACTGGAA-CAAGTGTTCAGACA-TGCTGA-G  136

seq1  GGGACTGACACATTCAAACTACACCAGACCTCAGAAACCTTGCATCACTC  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGACTGACACATTCAAACTACACCAGACCTCAG-AACCTTGCATCACTC  185

seq1  CTCCCGAGGCTGAGAAGCTGATGGGAGGATGGGAGTACTTTCTCTGCATA  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-CCGAGGCTGAGAAGCTGATGGGAGGATGGGAGTACTTTCTCTGCATA  234

seq1  CGCTTTTCCAAGATTGTTTGAAAACAAGTGACAAGCATGCTCCCCACGCC  300
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  CGCTTTT-CAAGATTG-TTGAAAACAAGTGACAAGCATGCTCCCCACGCC  282

seq1  CACATAAGACCACAGAGAACATCCTTTTAGTAATACAGATGCCAGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAGACCACAGAGAACATCCTTTTAGTAATACAGATGCCAGTGTGT  332

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGA  382

seq1  TAGAGAGAGATACAGTGGGAGAGGCATGTGTTCCATGGCATAAGTATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAGATACAGTGGGAGAGGCATGTGTTCCATGGCATAAGTATGGA  432

seq1  AGACAGAGGATAACTCTGTACTTGGATCTCTCCTTCCACCTTTCTCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGGATAACTCTGTACTTGGATCTCTCCTTCCACCTTTCTCTGGG  482

seq1  TTCTAGGGATGAACATCAGGTTCATCCTAGGAGACTTGCACAGCAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGGATGAACATCAGGTTCATCCTAGGAGACTTGCACAGCAAGCCA  532

seq1  CTACTGAACCATCTTGCTCTCCCCAGTAGTCTCACCTAGTAATGCAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAACCATCTTGCTCTCCCCAGTAGTCTCACCTAGTAATGCAGCTC  582

seq1  ATGTTAAAAGTTCCCTATTTGACCCCCAAATGACTTACAGTTCCCAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAAGTTCCCTATTTGACCCCCAAATGACTTACAGTTCCCAATGC  632

seq1  CCTCTATCTAAGTATTATGTGTTACATTTGTCTTTTTACTCATTAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATCTAAGTATTATGTGTTACATTTGTCTTTTTACTCATTAATTTT  682

seq1  TTTTTTATATTCATTGTGGTGGGGGAGTCATATGTCCCATAGCATGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATATTCATTGTGGTGGGGGAGTCATATGTCCCATAGCATGCATG  732

seq1  CTGAGGACAACTCCAGAAGCCAGTTTCTCAGTCATGTGTGTTCTGAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACAACTCCAGAAGCCAGTTTCTCAGTCATGTGTGTTCTGAGGAT  782

seq1  TGAACTACGGTTGTCAGGCTTGGAGGCAAGCACTTTTACCCATTGGACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACGGTTGTCAGGCTTGGAGGCAAGCACTTTTACCCATTGGACAA  832

seq1  GCTAGCCAGCCCAGCTTTATCCATTTTTTAAATCTAGAGCATCCACCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCAGCCCAGCTTTATCCATTTTTTAAATCTAGAGCATCCACCTAC  882

seq1  TCTTTGTAATATAACATCACCTTAAACTTGGCTACACCTGCTAATTTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAATATAACATCACCTTAAACTTGGCTACACCTGCTAATTTTTC  932

seq1  TAAACTCCTGGAGCCTGAGCAGATACCCCTAGCCCAGCCCAGGCATGAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCTGGAGCCTGAGCAGATACCCCTAGCCCAGCCCAGGCATGAGC  982

seq1  ATCTCAGGGTGAGTTTACTGTAGCATGGTCTTCAAGTGCAGCATGTCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGGTGAGTTTACTGTAGCATGGTCTTCAAGTGCAGCATGTCCTG  1032

seq1  AAAGGCGAACACAGAGCTCTCCCTAGATTGTGCACTTCCATGGTAAGTCG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGAACACAGAGCTCTCCCTAGATTGTGCACTTCCATGGTAAGTCG  1082

seq1  TACTGGTGGCTTAGAGTGAATTC  1123
      |||||||||||||||||||||||
seq2  TACTGGTGGCTTAGAGTGAATTC  1105

seq1: chr2_126991185_126992273
seq2: B6Ng01-130M13.g_68_1147

seq1  GAATTCCAGAGTGTTCAGGGATATAGGAATACTTCACAGAGCAGGGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTGTTCAGGGATATAGGAATACTTCACAGAGCAGGGGCTG  50

seq1  GTACTTACTGCAAAGAAATAGAATGAGAAAGGACTGAAAACTCTAAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTACTGCAAAGAAATAGAATGAGAAAGGACTGAAAACTCTAAGCAG  100

seq1  GCCTTGTACTCATTAGGGAAAGCTGGAAGTGACAGTCTTTAGCAGGGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTACTCATTAGGGAAAGCTGGAAGTGACAGTCTTTAGCAGGGGCG  150

seq1  TTTGGAAGCATTAGGGATATAATTGCTCCTCCCATTTTCATAGGACGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGCATTAGGGATATAATTGCTCCTCCCATTTTCATAGGACGGCT  200

seq1  TCAGTTGAGACAGCTTTCATTTGTGATGATCTCCTGGCCAAGCCCAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGAGACAGCTTTCATTTGTGATGATCTCCTGGCCAAGCCCAGATT  250

seq1  TTCTACACGTACACACTGCATTTACTTTTAGTAAAAAGATTCGAGAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACGTACACACTGCATTTACTTTTAGTAAAAAGATTCGAGAATAA  300

seq1  TATGTAACTTTTTGAGGCCTTTTAAATGACAAAACATAAGCAGGGTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACTTTTTGAGGCCTTTTAAATGACAAAACATAAGCAGGGTCAGA  350

seq1  TATTCTGCATTGTGATGAAGAGGAAGTGACAAAAATGTCGAAAGACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCATTGTGATGAAGAGGAAGTGACAAAAATGTCGAAAGACAGAA  400

seq1  TCCCCTGGGATATGCTGAGGTCACTGTGTTCTCTTGCATGAATGTTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGGGATATGCTGAGGTCACTGTGTTCTCTTGCATGAATGTTAACT  450

seq1  CCTTTCTTATCGTGCTGTCTCTATTTGAATGCCTGCTGTGGCTCTGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTATCGTGCTGTCTCTATTTGAATGCCTGCTGTGGCTCTGGGTT  500

seq1  TTGAATATGGCTTCCTTTTCAGTTGTGAAACTAGGTTTTCTGGAAATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATGGCTTCCTTTTCAGTTGTGAAACTAGGTTTTCTGGAAATGTC  550

seq1  AAATCTGTTTTGAAGG-TTTTAAGTACTGAGTGACTGATTGGAACTTGAT  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATCTGTTTTGAAGGTTTTTAAGTACTGAGTGACTGATTGGAACTTGAT  600

seq1  GATTCTGAGAAGTGGAGTTTTATTGTTGAAGCAAATACTGTCTTTGGTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGAGAAGTGGAGTTTTATTGTTGAAGCAAATACTGTCTTTGGTCA  650

seq1  TCATGAGTCATTTCCATCTATTAGTCTAGTCTTTATGTACCCATGCATCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTCATTTCCATCTATTAGTCTAGTCTTTATGTACCCATGCATCC  700

seq1  TTGTGGCCTTCAGGCCAAACATTTACAGTGTTTGGAGGAAGCCACAAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCTTCAGGCCAAACATTTACAGTGTTTGGAGGAAGCCACAAACT  750

seq1  CCCTCTAACCCTAAGCCCTGCTGGCTGTAAGACAGCAAATAAAATCTATA  799
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  CCCTCTAA-CCTAAGCCCTGCTGGCTGTAAGACAGC-AATAAAATCTATA  798

seq1  GTAGAGTCTCTCTACTATA-TCTGATGCTTGCATTGACTCTGAAATATTT  848
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTAGA-TCTCTCTACTATATTCTGATGCTTGCATTGACTCTGAAATATTT  847

seq1  TTTTCTGTGACCATGAATGTTATATACTAATGGGGGAACCTTAGC-TTTT  897
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TTTTCTGTGACCATGAATGTTATATACTAATGGGGGAACTTTAGCTTTTT  897

seq1  TGGAGAAGGCTGAATCTACATTCACTGGCATGGTCACTCACTTTTAGCTT  947
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TGGAGAAGGCTGAATCTACATTC-CTGGCATGGTCACTCAC-TTTAGCTT  945

seq1  CAAATAACCTGTTTCTTCCTATCTGTGGTGAAAGATCTGTATTTTAACTT  997
      |||   ||||||| ||| || ||| ||| | |||||||||||||||||||
seq2  CAA--TACCTGTTCCTT-CTTTCT-TGGGGGAAGATCTGTATTTTAACTT  991

seq1  AACAACATCAACCACTAGATGTCAGGCTTGTCCTGAAAATTGCTCTGTTG  1047
      |||||| |||||||||||||||| ||| ||||||| |||||||||||| |
seq2  AACAACTTCAACCACTAGATGTCCGGC-TGTCCTGGAAATTGCTCTGTGG  1040

seq1  CCACTTTTAAATGAAATTTACAGCAGGCAGCTCAGATCTTAA  1089
      |||  ||| ||||||||| ||  ||||||||||  |||||||
seq2  CCA--TTTTAATGAAATTAACGACAGGCAGCTCTAATCTTAA  1080