BAC Information

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BAC

Clone NameB6Ng01-130M22
Chromosome2 (Build37)
Map Location 118,938,938 - 119,087,867
singlet/doubletdoublet
Overlap geneRad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5
Downstream geneRhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130M22.bB6Ng01-130M22.g
ACCDH932027DH932028
length1,1651,116
definitionDH932027|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M22, 5' end.DH932028|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,086,703 - 119,087,867)(118,938,938 - 118,940,045)
sequence
gaattccctggggccttttggaacgagaaagcaggtagccagaccccacc
cagggacacctgtccgttattgcttcctccttcaggcctgtgctgtgtgt
gattagattccattgcttctgcctgccttcctcttcagctctgatcctgc
taacacagctgttcacagtcgctgtccctccgagagaggtaagattgttg
ttctccttgcaaatcaggagaccctttattctggagactgtacaacccac
ccactccctatgccaggcaataggatgtgttcattgaagatccttaccct
caccaatcacacacagacacacacacacagacacacacacacagacacac
acagacacacacagacacacacacacacacagattcagcctctagttcca
gcctcatcatgacttgctgggtgactttgggcaaattactgccttccctc
ttgtctgagtttctagcagttatgaagtggggctaatactctctgcccct
ccctggctcccaggggaccagtagggataagcaagataatagccgagaac
tgatttggaggaagctattccgtgccaactaagaggcatcagagctggtc
tgtgtttacatgggtgtggaactgtagttcccagcctcctggggcttgag
accagccctgacagcttcttggctcttgacttctttgtcccacttccaga
gagaggacagaaaccaaagctgaacagttgtctacagatgagactaccac
agcacagactttgggtctttggaacactggttccccagcctggctataat
tccagatactggctgtgtgattcaaggcctgtcactgcccctctctgggg
ctttagctcctcaacaatgacagccctcataattctgggactgagagagg
agaggaccctaaagcctgtaattgaatgctaatgtcactaaggtggacag
gaaaaatcctgccacctaactctaccttctttattatcctgaaaattttt
ccctgtggggccatagacaaaccacatgatcaactcaaaccataaattat
gcgcagagtggggcatcttgtaagacgtaatgtcgaagagaagtcctcga
gaagaactaccgatggaggatgactaaccatgtgagcctctctggtcagt
gctctacacccgaga
ttgtggagaaaaccgacctgtacttcaagcatttgttttgagacccgagg
tcacgacctaggctgggcagggctcgaactgctacccttagtctcccaat
gctgggatttacaaactttcaggttcacttctgtggtccggacgcaggaa
gctgagatcagagaaaagtgctcacagctgttacgtagtagggccagggc
taacagattcttggttactttaaaatgagggtagtggctggtctctctgg
agactgaagtagaaggccccagagttcaaagattgcgtaagcaaaagagt
agcaaagaccgagaaataaaacaaatttctaaagagaatcttggctagat
gactcacctatataatcgtagcacttgggagaggcaggaggatgacagtt
tcaagaccatcctgagccacaaatggaagagctgtctcagaaaaggaaaa
gtgaagaacaggggctggaaggtggctctgctgttaagagcacttgctgc
tcttcccaaggaactgagttcagctcctgtacccacatggtggcttacaa
ccaaccataactccagttccaggggatccagtgccgccttctgacctcag
ataccaggcatgcttgtggtacgcacacatgtatgcaggcaaaattctca
tgaacaaaaaagaaatctaaaaggaacttccaagaaataaaaataaaatg
aagtataaaatacaaagatgtataaaatacaagtgtatacgtgagtgaat
acaaagtgaatatattgggggctagagagagggctcagtggttaagagca
ctgactgctcttttgaaggtcccaagttcaaatcccagcaaccacatggt
ggctcacagccatcagtacaactgcagtgtactcatatacataaaataaa
atctttcaaaaacaagacaacaaaaaaagaattgtatctatgtaatcact
aatagactgctgttaccatgctataaacctcttgttatccttcctggttt
agtatttccccctcaccctgaatggctgaacagtggatttctaaaactgt
tcactaagggtggccttacctttaaagggcattattttaggcacggaatc
tgaattttgtaaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119086703_119087867
seq2: B6Ng01-130M22.b_46_1210 (reverse)

seq1  TCTCGGGTAGA-AGCACTGA-CAGAGAAGGCT-ACATGGTTAGTTCATCC  47
      ||||||||  | |||||||| ||||| ||||| |||||||||| ||||||
seq2  TCTCGGGTGTAGAGCACTGACCAGAG-AGGCTCACATGGTTAG-TCATCC  48

seq1  TCACTCGGCTAG-TCTTCTCTGAGACTTCTCTCTGACCATACACGTCCTT  96
      ||  |||| ||| |||||||   |||||||||  |||  |  |||| |||
seq2  TCCATCGG-TAGTTCTTCTCGAGGACTTCTCTTCGACATT--ACGT-CTT  94

seq1  AC-AGATGCCCCACTCTGCGCATAATTTATGGTTTTGGGTTGATCATGTG  145
      || ||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  ACAAGATGCCCCACTCTGCGCATAATTTATGG-TTTGAGTTGATCATGTG  143

seq1  GTTTGTCTATGGCCCCAACAGGGAAAAATTTTCAGGAT-ATAAAGAAGGT  194
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  GTTTGTCTATGGCCCC-ACAGGGAAAAATTTTCAGGATAATAAAGAAGGT  192

seq1  AGAGTTAGGTGGCAGGATTTTTCCTGTCCCACCTTAGTGACATTAGCATT  244
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAGTTAGGTGGCAGGATTTTTCCTGT-CCACCTTAGTGACATTAGCATT  241

seq1  CAATTACAGGCTTTAGGGTCCTCTCCTCTCTCAGT-CCAGAATTATGA-G  292
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  CAATTACAGGCTTTAGGGTCCTCTCCTCTCTCAGTCCCAGAATTATGAGG  291

seq1  GCTGTCATTGTTGAGGAGCTAAAG-CCCAGAGAGGGGCAGTGACAGGCCT  341
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTGTCATTGTTGAGGAGCTAAAGCCCCAGAGAGGGGCAGTGACAGGCCT  341

seq1  TGAATCACACAGCCAGTATCTGGAATTATAGCCAGGCTGGGGAACCAGTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCACACAGCCAGTATCTGGAATTATAGCCAGGCTGGGGAACCAGTG  391

seq1  TTCCAAAGACCCAAAGTCTGTGCTGTGGTAGTCTCATCTGTAGACAACTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGACCCAAAGTCTGTGCTGTGGTAGTCTCATCTGTAGACAACTG  441

seq1  TTCAGCTTTGGTTTCTGTCCTCTCTCTGGAAGTGGGACAAAGAAGTCAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTTGGTTTCTGTCCTCTCTCTGGAAGTGGGACAAAGAAGTCAAG  491

seq1  AGCCAAGAAGCTGTCAGGGCTGGTCTCAAGCCCCAGGAGGCTGGGAACTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAAGCTGTCAGGGCTGGTCTCAAGCCCCAGGAGGCTGGGAACTA  541

seq1  CAGTTCCACACCCATGTAAACACAGACCAGCTCTGATGCCTCTTAGTTGG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCACACCCATGTAAACACAGACCAGCTCTGATGCCTCTTAGTTGG  591

seq1  CACGGAATAGCTTCCTCCAAATCAGTTCTCGGCTATTATCTTGCTTATCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAATAGCTTCCTCCAAATCAGTTCTCGGCTATTATCTTGCTTATCC  641

seq1  CTACTGGTCCCCTGGGAGCCAGGGAGGGGCAGAGAGTATTAGCCCCACTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGTCCCCTGGGAGCCAGGGAGGGGCAGAGAGTATTAGCCCCACTT  691

seq1  CATAACTGCTAGAAACTCAGACAAGAGGGAAGGCAGTAATTTGCCCAAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGCTAGAAACTCAGACAAGAGGGAAGGCAGTAATTTGCCCAAAG  741

seq1  TCACCCAGCAAGTCATGATGAGGCTGGAACTAGAGGCTGAATCTGTGTGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGCAAGTCATGATGAGGCTGGAACTAGAGGCTGAATCTGTGTGT  791

seq1  GTGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGTCTGTGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGTCTGTGT  841

seq1  GTGTGTGTCTGTGTGTGATTGGTGAGGGTAAGGATCTTCAATGAACACAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCTGTGTGTGATTGGTGAGGGTAAGGATCTTCAATGAACACAT  891

seq1  CCTATTGCCTGGCATAGGGAGTGGGTGGGTTGTACAGTCTCCAGAATAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGCCTGGCATAGGGAGTGGGTGGGTTGTACAGTCTCCAGAATAAA  941

seq1  GGGTCTCCTGATTTGCAAGGAGAACAACAATCTTACCTCTCTCGGAGGGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCCTGATTTGCAAGGAGAACAACAATCTTACCTCTCTCGGAGGGA  991

seq1  CAGCGACTGTGAACAGCTGTGTTAGCAGGATCAGAGCTGAAGAGGAAGGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGACTGTGAACAGCTGTGTTAGCAGGATCAGAGCTGAAGAGGAAGGC  1041

seq1  AGGCAGAAGCAATGGAATCTAATCACACACAGCACAGGCCTGAAGGAGGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAGCAATGGAATCTAATCACACACAGCACAGGCCTGAAGGAGGA  1091

seq1  AGCAATAACGGACAGGTGTCCCTGGGTGGGGTCTGGCTACCTGCTTTCTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAACGGACAGGTGTCCCTGGGTGGGGTCTGGCTACCTGCTTTCTC  1141

seq1  GTTCCAAAAGGCCCCAGGGAATTC  1165
      ||||||||||||||||||||||||
seq2  GTTCCAAAAGGCCCCAGGGAATTC  1165

seq1: chr2_118938938_118940045
seq2: B6Ng01-130M22.g_76_1191

seq1  TTGTGGAGAAAACCGACCTGTACTTCAAGCATTTGTTTTGAGACCCGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAGAAAACCGACCTGTACTTCAAGCATTTGTTTTGAGACCCGAGG  50

seq1  TCACGACCTAGGCTGGGCAGGGCTCGAACTGCTACCCTTAGTCTCCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGACCTAGGCTGGGCAGGGCTCGAACTGCTACCCTTAGTCTCCCAAT  100

seq1  GCTGGGATTTACAAACTTTCAGGTTCACTTCTGTGGTCCGGACGCAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTTACAAACTTTCAGGTTCACTTCTGTGGTCCGGACGCAGGAA  150

seq1  GCTGAGATCAGAGAAAAGTGCTCACAGCTGTTACGTAGTAGGGCCAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGATCAGAGAAAAGTGCTCACAGCTGTTACGTAGTAGGGCCAGGGC  200

seq1  TAACAGATTCTTGGTTACTTTAAAATGAGGGTAGTGGCTGGTCTCTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATTCTTGGTTACTTTAAAATGAGGGTAGTGGCTGGTCTCTCTGG  250

seq1  AGACTGAAGTAGAAGGCCCCAGAGTTCAAAGATTGCGTAAGCAAAAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAGTAGAAGGCCCCAGAGTTCAAAGATTGCGTAAGCAAAAGAGT  300

seq1  AGCAAAGACCGAGAAATAAAACAAATTTCTAAAGAGAATCTTGGCTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGACCGAGAAATAAAACAAATTTCTAAAGAGAATCTTGGCTAGAT  350

seq1  GACTCACCTATATAATCGTAGCACTTGGGAGAGGCAGGAGGATGACAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACCTATATAATCGTAGCACTTGGGAGAGGCAGGAGGATGACAGTT  400

seq1  TCAAGACCATCCTGAGCCACAAATGGAAGAGCTGTCTCAGAAAAGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCATCCTGAGCCACAAATGGAAGAGCTGTCTCAGAAAAGGAAAA  450

seq1  GTGAAGAACAGGGGCTGGAAGGTGGCTCTGCTGTTAAGAGCACTTGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAACAGGGGCTGGAAGGTGGCTCTGCTGTTAAGAGCACTTGCTGC  500

seq1  TCTTCCCAAGGAACTGAGTTCAGCTCCTGTACCCACATGGTGGCTTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAAGGAACTGAGTTCAGCTCCTGTACCCACATGGTGGCTTACAA  550

seq1  CCAACCATAACTCCAGTTCCAGGGGATCCAGTGCCGCCTTCTGACCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCATAACTCCAGTTCCAGGGGATCCAGTGCCGCCTTCTGACCTCAG  600

seq1  ATACCAGGCATGCTTGTGGTACGCACACATGTATGCAGGCAAAATTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGGCATGCTTGTGGTACGCACACATGTATGCAGGCAAAATTCTCA  650

seq1  TGAACAAAAAAGAAATCTAAAAGGAACTTCCAAGAAATAAAAATAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAAAAGAAATCTAAAAGGAACTTCCAAGAAATAAAAATAAAATG  700

seq1  AAGTATAAAATACAAAGATGTATAAAATACAAGTGTATACGTGAGTGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAAATACAAAGATGTATAAAATACAAGTGTATACGTGAGTGAAT  750

seq1  ACAAAGTGAATATATTGGGGGCTAGAGAGAGGGCTCAGTGGTTAAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAATATATTGGGGGCTAGAGAGAGGGCTCAGTGGTTAAGAGCA  800

seq1  CTGACTGCTCTTTTGAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCTCTTTTGAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGT  850

seq1  GGCTCACAGCCATCAGTACAACTGCAGTGTACTCATATACATAAAATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAGCCATCAGTACAACTGCAGTGTACTCATATACATAAAATAAA  900

seq1  ATCTTTCAAAAACAAGACAACAAAAAAAGAA-TGTATCTATGTAATCACT  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCTTTCAAAAACAAGACAACAAAAAAAGAATTGTATCTATGTAATCACT  950

seq1  AATAGACTGCTGTTACCATGCTATAAACCTCTTGTTATCCTTCCTGGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATAGACTGCTGTTACCATGCTATAAACCTCTTGTTATCCTTCCTGG-TT  999

seq1  TAGTATTTCCCCCTCACCCTG-ATGGCTGAACAGT-GATTTCTAAAACTG  1047
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  TAGTATTTCCCCCTCACCCTGAATGGCTGAACAGTGGATTTCTAAAACTG  1049

seq1  TTCACTAA-GGTGGCC-TACCTTTAAAAGGCATTA-TTTAGGCA--GGAT  1092
      |||||||| ||||||| |||||||||| ||||||| ||||||||  | ||
seq2  TTCACTAAGGGTGGCCTTACCTTTAAAGGGCATTATTTTAGGCACGGAAT  1099

seq1  CTG-ATTTTGTAACCCA  1108
      ||| |||||||||||||
seq2  CTGAATTTTGTAACCCA  1116