BAC Information

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BAC

Clone NameB6Ng01-131E04
Chromosome2 (Build37)
Map Location 46,756,470 - 46,851,367
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131E04.bB6Ng01-131E04.g
ACCDH932363DH932364
length1,162365
definitionDH932363|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E04, 5' end.DH932364|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,756,470 - 46,757,642)(46,850,893 - 46,851,367)
sequence
gaattcttttaaaaactaaacatttcttcaaagaagtgtctagcagttta
caatataaattaagttatttaattcagtattttaaaagcagccagcttta
tagatagaccttggagttatatgacacgttctctaatgctctttgtgtac
tttttaaaacaattcagacaagtttcttaattactttttatggacaagat
ataattatatgtttaggatatatatgtatataatatatctcacattttcc
tgctgttacatatattactcaaacactgctgaattagaatcctactcatt
taatataataatataatcttttcttcttatatatgaatgtgacaaggtag
ctataatttacatattcaaaatgtttcccctacatctcagtacctgagct
gaaccaaagctataaatattttaatttcaaatgctaaatactgaaactaa
tttattaattgacagggtcagacggttggtgttctgttaatgagatcaaa
ttctcagtggctgaaaacctttcccatagtaaccagtttcactctatgta
aaactgctctcttgtcagtcattcttccagtcttcaggaataagtcacta
tttcatggagctcctatgacttgattgtccctgtcacttcctcttaccca
aaagtaattcatcctggtgcaatgggcaaaacatttttatctgcctcaaa
acagcttttctaattatttgcattttcaatccactgtcccaatacattca
actatttccttggatgtttctaaagaaacatgcttaggggacaccttttc
cgaaccatcaatggtagtagtaaatgccttgctcctcagagaatttacaa
gatcaaaacctcatggtgtacatggaggtcttagatgataatttttctat
gttctttcatgtacatttatcaaaaatgaatttcatctgccactgggctt
cacaattctccggtatgattagagccatctggagcatctccaaacctcat
tagttttaactaccaaagtagcataatgtgtcagaatatttaccacctac
tcttgtgtatagtcacatcattagcagtacactgaaataccagtctcagg
acaaagagtcacatttcctctttcagctcccacactgaagagcactcttg
ttctcattccgc
aaaactgaggaatggctaagaagtgtctaaataaatgttcatagtccttg
ttgatcagagaaattcaaatcaaaacaatcatttcaaattctgacaggag
ccaccattttggttccattctactgtgatcctccctccctcccttcctcc
tccctcggcccctctgttcttctcttctttcctgtcttcctttcttcctc
cttttttttctccctcctttcatgtaagttttgttataatgttgttggag
gaagcatatatgcaggtccatgctgagggggcccatttatcctatctata
agacaggactagtataaatggaagtttattaggaaaaggtaaagggaagg
ggaaggggaaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_46756470_46757642
seq2: B6Ng01-131E04.b_43_1204

seq1  GAATTCTTTTAAAAACTAAACATTTCTTCAAAGAAGTGTCTAGCAGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAAAACTAAACATTTCTTCAAAGAAGTGTCTAGCAGTTTA  50

seq1  CAATATAAATTAAGTTATTTAATTCAGTATTTTAAAAGCAGCCAGCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAAATTAAGTTATTTAATTCAGTATTTTAAAAGCAGCCAGCTTTA  100

seq1  TAGATAGACCTTGGAGTTATATGACACGTTCTCTAATGCTCTTTGTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGACCTTGGAGTTATATGACACGTTCTCTAATGCTCTTTGTGTAC  150

seq1  TTTTTAAAACAATTCAGACAAGTTTCTTAATTACTTTTTATGGACAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAACAATTCAGACAAGTTTCTTAATTACTTTTTATGGACAAGAT  200

seq1  ATAATTATATGTTTAGGATATATATGTATATAATATATCTCACATTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATATGTTTAGGATATATATGTATATAATATATCTCACATTTTCC  250

seq1  TGCTGTTACATATATTACTCAAACACTGCTGAATTAGAATCCTACTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTACATATATTACTCAAACACTGCTGAATTAGAATCCTACTCATT  300

seq1  TAATATAATAATATAATCTTTTCTTCTTATATATGAATGTGACAAGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATAATATAATCTTTTCTTCTTATATATGAATGTGACAAGGTAG  350

seq1  CTATAATTTACATATTCAAAATGTTTCCCCTACATCTCAGTACCTGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTTACATATTCAAAATGTTTCCCCTACATCTCAGTACCTGAGCT  400

seq1  GAACCAAAGCTATAAATATTTTAATTTCAAATGCTAAATACTGAAACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAAGCTATAAATATTTTAATTTCAAATGCTAAATACTGAAACTAA  450

seq1  TTTATTAATTGACAGGGTCAGACGGTTGGTGTTCTGTTAATGAGATCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATTGACAGGGTCAGACGGTTGGTGTTCTGTTAATGAGATCAAA  500

seq1  TTCTCAGTGGCTGAAAACCTTTCCCATAGTAACCAGTTTCACTCTATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTGGCTGAAAACCTTTCCCATAGTAACCAGTTTCACTCTATGTA  550

seq1  AAACTGCTCTCTTGTCAGTCATTCTTCCAGTCTTCAGGAATAAGTCACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTCTCTTGTCAGTCATTCTTCCAGTCTTCAGGAATAAGTCACTA  600

seq1  TTTCATGGAGCTCCTATGACTTGATTGTCCCTGTCACTTCCTCTTACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGAGCTCCTATGACTTGATTGTCCCTGTCACTTCCTCTTACCCA  650

seq1  AAAGTAATTCATCCTGGTGCAATGGGCAAAACATTTTTATCTGCCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATTCATCCTGGTGCAATGGGCAAAACATTTTTATCTGCCTCAAA  700

seq1  ACAGCTTTTCTAATTATTTGCATTTTCAATCCACTGTCCCAATACATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTTCTAATTATTTGCATTTTCAATCCACTGTCCCAATACATTCA  750

seq1  ACTATTTCCTTGGATGTTTCTAAAGAAACATGCTTAGGGGACACCTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCCTTGGATGTTTCTAAAGAAACATGCTTAGGGGACACCTTTTC  800

seq1  CGAACCATCAATGGTAGTAGTAAATGCCTTGCTCCTCAGAGAATTTACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCATCAATGGTAGTAGTAAATGCCTTGCTCCTCAGAGAATTTACAA  850

seq1  GATCAAAACCTCATGGTGTACATGGAGGTCTTAGATGATAATTTTTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAACCTCATGGTGTACATGGAGGTCTTAGATGATAATTTTTCTAT  900

seq1  GTTCTTTCATGTACATTTATCAAAAATGAATTTCATCTGCCACTGGGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCATGTACATTTATCAAAAATGAATTTCATCTGCCACTGGGCTT  950

seq1  CACAATTCTCCGGTATGATTAGAGCCATCTGGAGCATCTCCCAAACCTCA  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACAATTCTCCGGTATGATTAGAGCCATCTGGAGCATCT-CCAAACCTCA  999

seq1  TTAGTTTTTAACTAACCAAAGTAGCATAATGTTGTCAGAATATTTTACCA  1050
      |||| |||||||| ||||||||||||||||| |||||||||| |||||||
seq2  TTAG-TTTTAACT-ACCAAAGTAGCATAATG-TGTCAGAATA-TTTACCA  1045

seq1  CCTACCTCTTTGTGTATAGTCCACATCATTAGCAAGTACACTGAAATACC  1100
      |||| ||| ||||||||||| |||||||||||| ||||||||||||||||
seq2  CCTA-CTC-TTGTGTATAGT-CACATCATTAGC-AGTACACTGAAATACC  1091

seq1  CAGGTCTTCAGGAC-AAGAGTCACAATCTCCTCTTTCAGCTTCCCACACT  1149
         ||| ||||||| ||||||||| || |||||||||||| |||||||||
seq2  --AGTC-TCAGGACAAAGAGTCAC-ATTTCCTCTTTCAGC-TCCCACACT  1136

seq1  GAAGAGCACTCTTG-TCTCA-TCCGC  1173
      |||||||||||||| ||||| |||||
seq2  GAAGAGCACTCTTGTTCTCATTCCGC  1162

seq1: chr2_46850893_46851367
seq2: B6Ng01-131E04.g_70_440 (reverse)

seq1  CCCCTTCTCTCTTTCTCTACCCCTTTCCAGGTCTCTTTTGCCCTTTCCCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCCTTTCCCTTTCCTTTTCCCTTTCCCTTTCCCTTTCCTTTCCCCTTC  100
                                                       |
seq2  -------------------------------------------------C  1

seq1  CCCTTCCCCTTCCCCTTCCCCTTCCCTTTACCTTTTCCTAATAAACTTCC  150
      ||||     |||||||||||||||||||||||||||||||||||||||||
seq2  CCCT-----TTCCCCTTCCCCTTCCCTTTACCTTTTCCTAATAAACTTCC  46

seq1  ATTTATACTAGTCCTGTCTTATAGATAGGATAAATGGGCCCCCTCAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACTAGTCCTGTCTTATAGATAGGATAAATGGGCCCCCTCAGCAT  96

seq1  GGACCTGCATATATGCTTCCTCCAACAACATTATAACAAAACTTACATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGCATATATGCTTCCTCCAACAACATTATAACAAAACTTACATGA  146

seq1  AAGGAGGGAGAAAAAAAAGGAGGAAGAAAGGAAGACAGGAAAGAAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGAGAAAAAAAAGGAGGAAGAAAGGAAGACAGGAAAGAAGAGAA  196

seq1  GAACAGAGGGGCCGAGGGAGGAGGAAGGGAGGGAGGGAGGATCACAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGGGGCCGAGGGAGGAGGAAGGGAGGGAGGGAGGATCACAGTAG  246

seq1  AATGGAACCAAAATGGTGGCTCCTGTCAGAATTTGAAATGATTGTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAACCAAAATGGTGGCTCCTGTCAGAATTTGAAATGATTGTTTTGA  296

seq1  TTTGAATTTCTCTGATCAACAAGGACTATGAACATTTATTTAGACACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTCTCTGATCAACAAGGACTATGAACATTTATTTAGACACTTC  346

seq1  TTAGCCATTCCTCAGTTTTGAATTC  475
      |||||||||||||||||||||||||
seq2  TTAGCCATTCCTCAGTTTTGAATTC  371