BAC Information

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BAC

Clone NameB6Ng01-131E16
Chromosome2 (Build37)
Map Location 56,149,496 - 56,269,554
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131E16.bB6Ng01-131E16.g
ACCDH932385DH932386
length1,112699
definitionDH932385|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E16, 5' end.DH932386|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,149,496 - 56,150,520)(56,268,621 - 56,269,554)
sequence
gaattctactttacccttaattatgaattaacaaattttaatattactgt
aatatttcataaaatacaataggaataaagtgtaccaaaaccaatcatta
ctttaataccaagaacaaatgtggacacaagaaataagaaaattttactg
caatttccctgctaaacaaaggcaaaaatttttctgaaaaaattattata
ctgcaaattgaacaacacattaagatatcataaactatgatccaaatgat
tataatcttagatgcacagatgttataacacacactgactaagggactgg
ggaaatggctccatggatggtggataaagtgctgaatgtgcaggtgtgaa
ggcctgagtacaatccccaggacccataccaccctgggtatggaactaca
gacctgtaatcccagctttgccacagcaagattggagttggaggcaggag
aatcctcataagctccctggcctgcaaggtgtgatatactgcactgaaca
agagaacctatctcaaatgttgaatgttgaaggttgacagttgtcattgc
ccctagacctgcactcacccacccaagcatgcacatagatatatacatac
aaatatcacacaatacacacatgcagaaatcacactagggctcaaaacct
tgactttcatgcctataaatcacacaaggttggatgtaaagaactgactc
cacaagttgtcctctgacttccacacacctgctatggtatacaagtgaac
acatgaatatgcacatatgtatatatgtgtactttatacacatatatata
catacacacacacacacacacacacacacacacacacacacacacacaca
cacacatatatatatatatcataataaagataatatgaacaacaagtttt
ggcaaagaagaaaaattgtttattcttttcttatacagctattccaacat
gggtaagctgatttagaatgggcatgtctcctttatgaatattcagaatc
acattactctgctagataggactcaattgctggcattttagcaggtgtag
ctaaaatactggtgtcaaataccgggaggtatcactgggttcattacgac
ttaggagaggca
gaattcctaatctgatggctttattaggagattatagatattgggagata
gggcatagttcatgaatgtaggtggggaaggactaattttggtaggatgt
agattatatttatctcacttcccctatctccatctctccctatttccctt
ctttcctccttttctcccttggctcctctccccttccttcctccctagct
ctctccctctttcatcctgccttccatgtggtgacctgctgtgaagtttt
aagtgctctgaacccaagagcaatggagctagccaagcatgaactgaaac
tgagcccaggtagatatttcctttactgtgttgcttttctcaggtatttt
gcacaacagagaatctgacacagttctcttctttctgattctttcacttt
gttttcaatcagttaagataaaaaaaaatgacatgaagaaaacattgaca
gcaactcagcaactttttaaaaaattttttgttaattctgtttgttagat
atcagatgtataacaaatacatattattatatagtcagtcttattcattg
tatattctgagaagcagagtagatcaaaacaaaacagccattagatactt
gttctggtgatgaacaccttgtgcttttaaatactaggtttaacatggaa
tatttttttttcttccttcctttccttccttcctttccttccttccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56149496_56150520
seq2: B6Ng01-131E16.b_134_1156

seq1  ACCAATCATTACTTTAATACCAAGAACAAATGTGGACACAAGAAATAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCATTACTTTAATACCAAGAACAAATGTGGACACAAGAAATAAGA  50

seq1  AAATTTTACTGCAATTTCCCTGCTAAACAAAGGCAAAAATTTTTCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTACTGCAATTTCCCTGCTAAACAAAGGCAAAAATTTTTCTGAAA  100

seq1  AAATTATTATACTGCAAATTGAACAACACATTAAGATATCATAAACTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTATACTGCAAATTGAACAACACATTAAGATATCATAAACTATG  150

seq1  ATCCAAATGATTATAATCTTAGATGCACAGATGTTATAACACACACTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATGATTATAATCTTAGATGCACAGATGTTATAACACACACTGAC  200

seq1  TAAGGGACTGGGGAAATGGCTCCATGGATGGTGGATAAAGTGCTGAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGACTGGGGAAATGGCTCCATGGATGGTGGATAAAGTGCTGAATGT  250

seq1  GCAGGTGTGAAGGCCTGAGTACAATCCCCAGGACCCATACCACCCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTGAAGGCCTGAGTACAATCCCCAGGACCCATACCACCCTGGGT  300

seq1  ATGGAACTACAGACCTGTAATCCCAGCTTTGCCACAGCAAGATTGGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTACAGACCTGTAATCCCAGCTTTGCCACAGCAAGATTGGAGTT  350

seq1  GGAGGCAGGAGAATCCTCATAAGCTCCCTGGCCTGCAAGGTGTGATATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGAGAATCCTCATAAGCTCCCTGGCCTGCAAGGTGTGATATAC  400

seq1  TGCACTGAACAAGAGAACCTATCTCAAATGTTGAATGTTGAAGGTTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGAACAAGAGAACCTATCTCAAATGTTGAATGTTGAAGGTTGACA  450

seq1  GTTGTCATTGCCCCTAGACCTGCACTCACCCACCCAAGCATGCACATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCATTGCCCCTAGACCTGCACTCACCCACCCAAGCATGCACATAGA  500

seq1  TATATACATACAAATATCACACAATACACACATGCAGAAATCACACTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATACAAATATCACACAATACACACATGCAGAAATCACACTAGG  550

seq1  GCTCAAAACCTTGACTTTCATGCCTATAAATCACACAAGGTTGGATGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAACCTTGACTTTCATGCCTATAAATCACACAAGGTTGGATGTAA  600

seq1  AGAACTGACTCCACAAGTTGTCCTCTGACTTCCACACACCTGCTATGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGACTCCACAAGTTGTCCTCTGACTTCCACACACCTGCTATGGTA  650

seq1  TACAAGTGAACACATGAATATGCACATATGTATATATGTGTAC-TTATAC  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACAAGTGAACACATGAATATGCACATATGTATATATGTGTACTTTATAC  700

seq1  ACATATATATACAT--ACACACACACACACACACACACACACACACACAC  747
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  ACATATATATACATACACACACACACACACACACACACACACACACACAC  750

seq1  ACACACACACACACACATATATATATATATCATAATAAAGATAATATGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACATATATATATATATCATAATAAAGATAATATGAA  800

seq1  CAACAAAGTTTTGGCAAAGAAGAAAAATTGTTTATTCTTTCCTTATACAG  847
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAC-AAGTTTTGGCAAAGAAGAAAAATTGTTTATTCTTTTCTTATACAG  849

seq1  CTATTCCAACATGGGTAAGCTGATTTAGAATGGGCATGTCTCCCTTATGA  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTATTCCAACATGGGTAAGCTGATTTAGAATGGGCATGTCTCCTTTATGA  899

seq1  ATATTCAGAATCACATTACTCTGCTAGATAAGGACTCAATTGCTGGCATT  947
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATATTCAGAATCACATTACTCTGCTAGAT-AGGACTCAATTGCTGGCATT  948

seq1  TTAGCAGGTGTAGCTAAAATACTGGTGTCAAATACAGGGAGGTATCACTG  997
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTAGCAGGTGTAGCTAAAATACTGGTGTCAAATACCGGGAGGTATCACTG  998

seq1  GGTACATTACAGACTTTAGGGAGAGGCA  1025
      ||| |||||| |||||   |||||||||
seq2  GGTTCATTAC-GACTT--AGGAGAGGCA  1023

seq1: chr2_56268621_56269554
seq2: B6Ng01-131E16.g_72_770 (reverse)

seq1  GAAGGAAGGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAGGGAGGGAGGGAGGGGGGAGGGAGGGGGGAGGGAGGGAGGGAGGGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAGGGAGGGAGGGAGGGAAGGAGGAAGGAAGGAAGGAAGGAAGGAAGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGAAGGAAGGAAGGAAGGAAGAAAAGAAGGAAGGAAACAAGAAAGCAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGAAGCAAGGAAGAAAGAAAGGAATGAAGAAAGGAAGGAAGGAAGGAAGG  250
                                       ||||||||||||||   
seq2  ---------------------------------GAAGGAAGGAAGGA---  14

seq1  AAGGAAGGAAGG-AAGGAAGGAAGGAAGAAAAAAATATTCCATGTTAAAC  299
      |||||||||||| |||||||||||  | ||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAAGGAAGGAAG--AAAAAAAAATATTCCATGTTAAAC  62

seq1  CTAGTATTTAAAAGCACAAGGTGTTCATCACCAGAAC-AGTATCTAATGG  348
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTAGTATTTAAAAGCACAAGGTGTTCATCACCAGAACAAGTATCTAATGG  112

seq1  CTGTTTTG-TTTGATCTACTCTGCTTCTCAGAATATACAATGAATAAGAC  397
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTTTTGATCTACTCTGCTTCTCAGAATATACAATGAATAAGAC  162

seq1  TGACTATATAATAATATGTATTTGTTATACATCTGATATCTAACAAACAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATATAATAATATGTATTTGTTATACATCTGATATCTAACAAACAG  212

seq1  AATTAACAAAAAATTTTTTAAAAAGTTGCTGAGTTGCTGTCAATGTTTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAAAAAATTTTTTAAAAAGTTGCTGAGTTGCTGTCAATGTTTTC  262

seq1  TTCATGTCATTTTTTTTTATCTTAACTGATTGAAAACAAAGTGAAAGAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCATTTTTTTTTATCTTAACTGATTGAAAACAAAGTGAAAGAAT  312

seq1  CAGAAAGAAGAGAACTGTGTCAGATTCTCTGTTGTGCAAAATACCTGAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAGAGAACTGTGTCAGATTCTCTGTTGTGCAAAATACCTGAGA  362

seq1  AAAGCAACACAGTAAAGGAAATATCTACCTGGGCTCAGTTTCAGTTCATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACACAGTAAAGGAAATATCTACCTGGGCTCAGTTTCAGTTCATG  412

seq1  CTTGGCTAGCTCCATTGCTCTTGGGTTCAGAGCACTTAAAACTTCACAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTAGCTCCATTGCTCTTGGGTTCAGAGCACTTAAAACTTCACAGC  462

seq1  AGGTCACCACATGGAAGGCAGGATGAAAGAGGGAGAGAGCTAGGGAGGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACCACATGGAAGGCAGGATGAAAGAGGGAGAGAGCTAGGGAGGAA  512

seq1  GGAAGGGGAGAGGAGCCAAGGGAGAAAAGGAGGAAAGAAGGGAAATAGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGAGAGGAGCCAAGGGAGAAAAGGAGGAAAGAAGGGAAATAGGG  562

seq1  AGAGATGGAGATAGGGGAAGTGAGATAAATATAATCTACATCCTACCAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGAGATAGGGGAAGTGAGATAAATATAATCTACATCCTACCAAA  612

seq1  ATTAGTCCTTCCCCACCTACATTCATGAACTATGCCCTATCTCCCAATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCCTTCCCCACCTACATTCATGAACTATGCCCTATCTCCCAATAT  662

seq1  CTATAATCTCCTAATAAAGCCATCAGATTAGGAATTC  934
      |||||||||||||||||||||||||||||||||||||
seq2  CTATAATCTCCTAATAAAGCCATCAGATTAGGAATTC  699