BAC Information

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BAC

Clone NameB6Ng01-131E20
Chromosome2 (Build37)
Map Location 45,865,989 - 46,012,297
singlet/doubletdoublet
Overlap genenone
Upstream geneZeb2, LOC100042661, LOC100041337, LOC666604
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131E20.bB6Ng01-131E20.g
ACCDH932393DH932394
length1,175287
definitionDH932393|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E20, 5' end.DH932394|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,865,989 - 45,867,187)(46,012,011 - 46,012,297)
sequence
gaattcttacagcagaatgggctcaaacaattgcccagctttaggaacgg
ctgcaataccatctccgaagaagatacagcagatttttagaaatacaaaa
tgataatgattttttttctcattataaccagatttcttggattaaattgc
tatttaagttgaatttgataaacataaaatttacaaatgcatagaaaata
tattcataatgatattgcaccttgtaggaaaagtagatgaagtagataat
atgatattttttattggaccaataaataaaaggtaattctcaagccccaa
agtctcaagtacattttcagtttaaatgaatgcactcaggaagcatttta
ttgcaacattttcttgagggaatatataggtaaatggtcacaaaatgtgc
atgtgtgttgtaagctataacactcttgttttgttctattatttctacca
cacaaatgacttctgttctgacttctgcattccaaaggattcacatctgt
ctgacagaatattaagaaaccagaaaagaaaatcttactaaaagtcatgt
aacagaaaataaacgaacattcagtggaaaaaaaatgtcgatttagcaag
tgttaataaatgcaattatgaacccatagcaacaattagggtaattgtta
tacagtaatattttcagtcatgcaatcataagagtaacagctagcattta
ttgaatatttactatatgccaataaggatcttgcatatactaactaattt
aatccttacataaaccaactataggagtttgaaattgcaaattgacgata
actatcctaaaatattcagtagcagaaatgcttcaaactatggagttttc
tgatcttgcacgattcctataatggccttcctatattatagaactcaaat
gcaaacatctaattcagttacttaatctccaacagacatgtatcctgaaa
gtaattgatgagggtaggaaggattcctgatgctgattttcagctcatgg
tggctgtggaactccctcatgggcagagctgatgcctgcagcttcagagt
cgagagtaacaaaatctggagttaaggcaggcacatgccccagattctga
agcccaagcctggttgacatttgcttaaccgatagctgaagggagggttc
attttcgactgctcttctggatgcc
ttttgggcttcccttggtaagaatttgaagggaatttttttgtgtctgat
gcgagtttctgttagatcatttgtggagataatggttttgagaaaagtgc
tatcacctcaagtgacataattttatttaaaccatacacatataataaaa
aatactgtaaaatatatatgacacataatacatatatatagctacattaa
tatagttatatatacatatttttttatttttcaaatgtttatttatgata
cttatgtatatgaggatgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45865989_45867187
seq2: B6Ng01-131E20.b_45_1219

seq1  GAATTCTTACAGCAGAATGGGCTCAAACAATTGCCCAGCTTTAGGAACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAGCAGAATGGGCTCAAACAATTGCCCAGCTTTAGGAACGG  50

seq1  CTGCAATACCATCTCCGAAGAAGATACAGCAGATTTTTAGAAATACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATACCATCTCCGAAGAAGATACAGCAGATTTTTAGAAATACAAAA  100

seq1  TGATAATGATTTTTTTTCTCATTATAACCAGATTTCTTGGATTAAATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGATTTTTTTTCTCATTATAACCAGATTTCTTGGATTAAATTGC  150

seq1  TATTTAAGTTGAATTTGATAAACATAAAATTTACAAATGCATAGAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGTTGAATTTGATAAACATAAAATTTACAAATGCATAGAAAATA  200

seq1  TATTCATAATGATATTGCACCTTGTAGGAAAAGTAGATGAAGTAGATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAATGATATTGCACCTTGTAGGAAAAGTAGATGAAGTAGATAAT  250

seq1  ATGATATTTTTTATTGGACCAATAAATAAAAGGTAATTCTCAAGCCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTTTTATTGGACCAATAAATAAAAGGTAATTCTCAAGCCCCAA  300

seq1  AGTCTCAAGTACATTTTCAGTTTAAATGAATGCACTCAGGAAGCATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAGTACATTTTCAGTTTAAATGAATGCACTCAGGAAGCATTTTA  350

seq1  TTGCAACATTTTCTTGAGGGAATATATAGGTAAATGGTCACAAAATGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACATTTTCTTGAGGGAATATATAGGTAAATGGTCACAAAATGTGC  400

seq1  ATGTGTGTTGTAAGCTATAACACTCTTGTTTTGTTCTATTATTTCTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTGTAAGCTATAACACTCTTGTTTTGTTCTATTATTTCTACCA  450

seq1  CACAAATGACTTCTGTTCTGACTTCTGCATTCCAAAGGATTCACATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGACTTCTGTTCTGACTTCTGCATTCCAAAGGATTCACATCTGT  500

seq1  CTGACAGAATATTAAGAAACCAGAAAAGAAAATCTTACTAAAAGTCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGAATATTAAGAAACCAGAAAAGAAAATCTTACTAAAAGTCATGT  550

seq1  AACAGAAAATAAACGAACATTCAGTGGAAAAAAAATGTCGATTTAGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAATAAACGAACATTCAGTGGAAAAAAAATGTCGATTTAGCAAG  600

seq1  TGTTAATAAATGCAATTATGAACCCATAGCAACAATTAGGGTAATTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATAAATGCAATTATGAACCCATAGCAACAATTAGGGTAATTGTTA  650

seq1  TACAGTAATATTTTCAGTCATGCAATCATAAGAGTAACAGCTAGCATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAATATTTTCAGTCATGCAATCATAAGAGTAACAGCTAGCATTTA  700

seq1  TTGAATATTTACTATATGCCAATAAGGATCTTGCATATACTAACTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATTTACTATATGCCAATAAGGATCTTGCATATACTAACTAATTT  750

seq1  AATCCTTACATAAACCAACTATAGGAGTTTGAAATTGCAAATTGACGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTACATAAACCAACTATAGGAGTTTGAAATTGCAAATTGACGATA  800

seq1  ACTATCCTAAAATATTCAGTAGCAGAAATGCTTCAAACTATGGAGTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCTAAAATATTCAGTAGCAGAAATGCTTCAAACTATGGAGTTTTC  850

seq1  TGATCTTGCACGATTCCTATAATGGCCTTCCTATATTATAGAACTCAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGCACGATTCCTATAATGGCCTTCCTATATTATAGAACTCAAAT  900

seq1  GCAAACATCTAATTCAGTTACTTAATCTCCAACAGACATGTATCCTGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACATCTAATTCAGTTACTTAATCTCCAACAGACATGTATCCTGAAA  950

seq1  GTAATTGATGAGGGTAGGAAGGATTCCTGATGCTGAATTTTCAGCTCATG  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTAATTGATGAGGGTAGGAAGGATTCCTGATGCTG-ATTTTCAGCTCATG  999

seq1  GTGGCTGTGGAACTCCCTCATGGGCAGGAGGCTGATGCCTGCAGGCTCCA  1050
      |||||||||||||||||||||||||||   ||||||||||||| ||| ||
seq2  GTGGCTGTGGAACTCCCTCATGGGCAG--AGCTGATGCCTGCA-GCTTCA  1046

seq1  GGAGTCGAGGAGTAACAAAATTCTGAGTGAAGGCA-GCACAATGCCCCCA  1099
       ||||||| ||||||||||||   |||| |||||| |||| ||| |||||
seq2  -GAGTCGA-GAGTAACAAAATCTGGAGTTAAGGCAGGCAC-ATG-CCCCA  1092

seq1  GATTCTGACAGCCAAAGCCTGTGTGAC-TATGCTCTAAACGCAGTAGGCT  1148
      |||||||| |||| |||||||  |||| | |||| ||| ||   || |||
seq2  GATTCTGA-AGCCCAAGCCTGGTTGACATTTGCT-TAACCG--ATA-GCT  1137

seq1  GAAAAGGGAGGG-TCATTTTTTCAGACTGCTCTTCCTGATTGCCTGGATG  1197
      |  ||||||||| |||||||    ||||||||||         |||||||
seq2  G--AAGGGAGGGTTCATTTT---CGACTGCTCTT---------CTGGATG  1173

seq1  CC  1199
      ||
seq2  CC  1175

seq1: chr2_46012011_46012297
seq2: B6Ng01-131E20.g_73_359 (reverse)

seq1  ACACACACACACACACACACATCCTCATATACATAAGTATCATAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACATCCTCATATACATAAGTATCATAAATAAA  50

seq1  CATTTGAAAAATAAAAAAATATGTATATATAACTATATTAATGTAGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAAAATAAAAAAATATGTATATATAACTATATTAATGTAGCTAT  100

seq1  ATATATGTATTATGTGTCATATATATTTTACAGTATTTTTTATTATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTATTATGTGTCATATATATTTTACAGTATTTTTTATTATATGT  150

seq1  GTATGGTTTAAATAAAATTATGTCACTTGAGGTGATAGCACTTTTCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTTTAAATAAAATTATGTCACTTGAGGTGATAGCACTTTTCTCAA  200

seq1  AACCATTATCTCCACAAATGATCTAACAGAAACTCGCATCAGACACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTATCTCCACAAATGATCTAACAGAAACTCGCATCAGACACAAAA  250

seq1  AAATTCCCTTCAAATTCTTACCAAGGGAAGCCCAAAA  287
      |||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCTTCAAATTCTTACCAAGGGAAGCCCAAAA  287