BAC Information

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BAC

Clone NameB6Ng01-131H03
Chromosome2 (Build37)
Map Location 84,897,513 - 84,898,700
singlet/doubletsinglet
Overlap geneTnks1bp1
Upstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1
Downstream geneAgtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131H03.bB6Ng01-131H03.g
ACCDH932500DH932501
length1,0581,164
definitionDH932500|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H03, 5' end.DH932501|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaacagttgagtagtactccattgtataaaagtacc
acattttctgtatctattactctgttgaagaacatctgagatctttcagg
cttctggctattataaataagactgctatgaacacagtggagcatgtgtc
cttgttatattttggagcatcttttggatatattcccaagagtgattgtt
ggatcctcaggtagtactatgttcaattttctgaagaacagccagactga
tttcagagtggttgtaccaggttgcaatcccactaacagtggaagagggt
tcctatttctctacatccttaacagcatctgctgtcacctgagtttttga
tcttagccattctaactggtgtgatgtggaatctcagggttgttttgatt
tgcatttccctgttgaacatttctttaagtgcttctcagccatttggtat
tcctcagttgagaattctttgtttagctctgtaccctatttttaataggg
ttatttggttctctggagtctaaattcttgagctctttgtatgtattgga
tattaaccagagactgatggatcccaccagcggatccatcccatatacag
ataccaaacccacacactactgaagttgccaagaagtacttgctgacagg
ggctgtctcctgagaggctatgccagagcctgacaaatacaggggtagat
gttcacagccaaccattgtactgagcacagggtccccaatggaggaatta
gagaaaggactgaagtagctgaaggggtttgcaacccacatgaggaacag
caagaccccctccccacccccagagctcccaggatttaaaccaccaacca
aagagtacatatggacagacctatggctccagccaaatgtgtagcagaga
tggccttgtcaggagaagaggctcttggacccgtgaaggcaggatgcctc
agcataagggaaagagcaaattttgctctttgcagagcaaagagacatga
gtgctggtgagtgtgagcaccttatagaagcaggggacggagatggatag
gggttcca
gaattcacttaatgtgtttgggagaaagcagagtggaacagtgcaggaga
accagaagcctggtgccacctctgtctccttcctttccctgatgtcatct
cctctctctgttcccagtaaccacagcagatttttctttttcttttatac
cgggggcccatatgcataaatcttatttaatctttatctaactctgacat
agacgttggtatcagtcctaaagtacaggtgtgaacccgaggaccgaaga
gatcccgtggaaatgagatgttcaacttataggagacagtccaaggattg
ctagaagccacgtgcctttcaggactccccttattctttgcttgaatcca
cagcctccgtgctcccttgggtagtactgagacctgtgctcagagcagag
gatggagatccattcctccacttggccatcctaggagatgctctgggctt
ggaatgaacttgtagtgttctgggggcaagccctctcccttcgtttcatg
tacatagtcaacatttcccccttcttctatttataaagtgtgggtcattt
gcccgagaactgtagcctctcagaggagaaccttaggtgagccttggggt
ttgagccactgaaacagtgagaatgttgccaagtgactagaatgtggcac
cttttctggggcgatgacctggtagaggagccttgcttgagttcacctcc
tgagcctttccctgtgtgagtttagactcagctgagaaccgagtgacaac
tcttgatctttctcttgcaggtttccaagacctgggtcacctcaagtgca
gaccctgtttcagagcatggcggctctaccagtgcatccgcctggctaac
atctctgtcccagcctcggagtctccccggctttcagccgcccgagttct
ccctgccattctcactttcagaaacccaagtcctgcagcttctgaggctt
cttccatctgcctccctgtgactcagcctcccccagtgcagtctgcctgc
tgagcctcccggccattctctagctagagttactgctgagcagcccagaa
accttagcccacagctcttcttgtgagacggttcaggcacccagcccaga
gcagctccagtctctggctacactcctggacttgaggggctgattcggac
attacagacgttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84897513_84898700
seq2: B6Ng01-131H03.g_69_1232

seq1  GAATTCACTTAATGTGTTTGGGAGAAAGCAGAGTGGAACAGTGCAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTAATGTGTTTGGGAGAAAGCAGAGTGGAACAGTGCAGGAGA  50

seq1  ACCAGAAGCCTGGTGCCACCTCTGTCTCCTTCCTTTCCCTGATGTCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGCCTGGTGCCACCTCTGTCTCCTTCCTTTCCCTGATGTCATCT  100

seq1  CCTCTCTCTGTTCCCAGTAACCACAGCAGATTTTTCTTTTTCTTTTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTGTTCCCAGTAACCACAGCAGATTTTTCTTTTTCTTTTATAC  150

seq1  CGGGGGCCCATATGCATAAATCTTATTTAATCTTTATCTAACTCTGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGCCCATATGCATAAATCTTATTTAATCTTTATCTAACTCTGACAT  200

seq1  AGACGTTGGTATCAGTCCTAAAGTACAGGTGTGAACCCGAGGACCGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTTGGTATCAGTCCTAAAGTACAGGTGTGAACCCGAGGACCGAAGA  250

seq1  GATCCCGTGGAAATGAGATGTTCAACTTATAGGAGACAGTCCAAGGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCGTGGAAATGAGATGTTCAACTTATAGGAGACAGTCCAAGGATTG  300

seq1  CTAGAAGCCACGTGCCTTTCAGGACTCCCCTTATTCTTTGCTTGAATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCCACGTGCCTTTCAGGACTCCCCTTATTCTTTGCTTGAATCCA  350

seq1  CAGCCTCCGTGCTCCCTTGGGTAGTACTGAGACCTGTGCTCAGAGCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCGTGCTCCCTTGGGTAGTACTGAGACCTGTGCTCAGAGCAGAG  400

seq1  GATGGAGATCCATTCCTCCACTTGGCCATCCTAGGAGATGCTCTGGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGATCCATTCCTCCACTTGGCCATCCTAGGAGATGCTCTGGGCTT  450

seq1  GGAATGAACTTGTAGTGTTCTGGGGGCAAGCCCTCTCCCTTCGTTTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAACTTGTAGTGTTCTGGGGGCAAGCCCTCTCCCTTCGTTTCATG  500

seq1  TACATAGTCAACATTTCCCCCTTCTTCTATTTATAAAGTGTGGGTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTCAACATTTCCCCCTTCTTCTATTTATAAAGTGTGGGTCATTT  550

seq1  GCCCGAGAACTGTAGCCTCTCAGAGGAGAACCTTAGGTGAGCCTTGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGAGAACTGTAGCCTCTCAGAGGAGAACCTTAGGTGAGCCTTGGGGT  600

seq1  TTGAGCCACTGAAACAGTGAGAATGTTGCCAAGTGACTAGAATGTGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCACTGAAACAGTGAGAATGTTGCCAAGTGACTAGAATGTGGCAC  650

seq1  CTTTTCTGGGGCGATGACCTGGTAGAGGAGCCTTGCTTGAGTTCACCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGGGGCGATGACCTGGTAGAGGAGCCTTGCTTGAGTTCACCTCC  700

seq1  TGAGCCTTTCCCTGTGTGAGTTTAGACTCAGCTGAGAACCGAGTGACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTTCCCTGTGTGAGTTTAGACTCAGCTGAGAACCGAGTGACAAC  750

seq1  TCTTGATCTTTCTCTTGCAGGTTTCCAAGACCTGGGTCACCTCAAGTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCTTTCTCTTGCAGGTTTCCAAGACCTGGGTCACCTCAAGTGCA  800

seq1  GACCCTGTTTCAGAGCATGGCGGCTCTACCAGTGCAGTCCGCCTGGCTAA  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACCCTGTTTCAGAGCATGGCGGCTCTACCAGTGCA-TCCGCCTGGCTAA  849

seq1  CATCTCTGTCCCAGCCTCGGAGTCTCCCCGGCTTTCAAGCCGCCCGAGTT  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATCTCTGTCCCAGCCTCGGAGTCTCCCCGGCTTTC-AGCCGCCCGAGTT  898

seq1  CTCCCTGCCATTCTCAACTTTCAGAAACCCAAAGTCCTGCAGCTTCTGAG  950
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  CTCCCTGCCATTCTC-ACTTTCAGAAACCC-AAGTCCTGCAGCTTCTGAG  946

seq1  GCTTCTTCCATCTGCCTCCCTGTGACTCCAGCCTCCCCCAGTGCAGTCTT  1000
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  GCTTCTTCCATCTGCCTCCCTGTGACT-CAGCCTCCCCCAGTGCAGTC-T  994

seq1  GCCTGCTGAGCCTCCCGGCCATTCTCCTAGCTCAGAGTTACCTGCTGAGG  1050
      ||||||||||||||||||||||||| |||||| ||||||| ||||||| |
seq2  GCCTGCTGAGCCTCCCGGCCATTCT-CTAGCT-AGAGTTA-CTGCTGA-G  1040

seq1  CAGCCCCAGAAACCCTCAGCCCCAACAGCTCTCCTGTGGAGACAGTCTCA  1100
      ||| |||||||| ||| |||||  |||||||| ||   ||||| || |||
seq2  CAG-CCCAGAAA-CCTTAGCCC--ACAGCTCTTCTTGTGAGACGGT-TCA  1085

seq1  GGGCACCACAGCCCAGAGCAGCCCCCAGTCCTCTTGCCTCAACTCCT-GA  1149
       |||||| ||||||||||||| | ||||| ||| || ||  |||||| ||
seq2  -GGCACC-CAGCCCAGAGCAG-CTCCAGT-CTC-TGGCTACACTCCTGGA  1130

seq1  CTGAGGGGGCTGAGTTGCCGGACATTACACGAACGTTCC  1188
      ||   |||||||| |   |||||||||||   |||||||
seq2  CTTGAGGGGCTGATT---CGGACATTACA--GACGTTCC  1164