BAC Information

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BAC

Clone NameB6Ng01-131H15
Chromosome2 (Build37)
Map Location 181,079,509 - 181,200,914
singlet/doubletdoublet
Overlap geneRtel1, Arfrp1, Zgpat, Lime1, Btbd4
Upstream geneEG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3
Downstream geneBC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131H15.bB6Ng01-131H15.g
ACCDH932524DH932525
length925896
definitionDH932524|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H15, 5' end.DH932525|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,079,509 - 181,080,430)(181,200,014 - 181,200,914)
sequence
gaattcttattgattcattttccttctgtctcccacagacctgtctgatg
tttaagaccaggtgatgagtcacccaccctgagttttttttgttttgttt
gagacagggtttctctgtgtagccctggctgtcttggaactcccttggta
ggccagactgtcctcgaactcagaaatttgcctgcctctgcctcccaagt
gctgggattaaaggtgtgcgccaccacttcccggccctgagatttctttt
attctttaagtgtaaggttttttttttttttaagatttatttattttata
tatgtgagcatgctgtcactctcttcagacacaccaggagaggccattgg
atcctattacagatgtatatgagccaccatgtggttgctggagatgaact
cagtacccctggaagagcatcagtgctcttaatcactgagccatcgctcc
gggcaaattaaaaaaaattttttttgtgtgtattcttggagaaatacatg
actctcatgaaatcagggagccctgctcatccctcacatggccagtttag
gtcgtggtatgtgagggtgtttctaaacactcatgcaaggccaaggccca
gggaagagtggttcagacaacttctctttcctctcccaggttgtgtcagg
tggggatgagaacaatgaaggcagctcaggaggttcagggcagcagcaga
tgatgatgtcctaaagaccataagtctaggcagacacagaaaagtcctgc
gagaacacagtgtcatgctcacacaatccaagctggaacacagtgcctgg
aggctttcacacacgctgtgaggggacttctatcacagcagaacccttgg
aatgagagtttggggttatcagtttagtttgaaatgagcatgtaagcaca
gtaaagaaggatctgctctggtcag
gaattcaagtctttgtgctagcatggcaagcacttcaccaactgaactat
ttccccagccccaaatgggagcaccattaaggttgtgcccatgtagatag
aggccagcatggaaggtggcaggctctctaattcaacagtgttcaggtaa
atcttgtgtgtagcctaagggcagagagttcaccacacaacagcactcaa
aaatatcagagcagtatccctgagtgcggtttgtacccatgagagtgttt
tgggggtgggttgagtactgatcattctcaagtactaattcttaaaactg
gaaataaggacctgggctgagatatactgtgagtggccactcagagctca
aacctagaactgataggagctgttttgtttttgttaatggttggttttgc
ttctcttccccctttcagaaaaaaaagtaaacttttattttgtagtaaca
tttcagaaaagttgcatattgtacaccacagagaatttcttgtgtgacct
ctcaaggttccaagtttctctaaggtcatctgccatttccacacgccttt
gggagcaccaggaagcccgggttggcacagctctccactgacttgagact
ttctttggatattcccacccagtctccaatatcctcctctaccctcagtc
ccctccatggcaccagccaccagcatgcctagagatgtcacagctcacgt
ttgtgaaggctgagacaacttctcaggcttcctttgtttcctgtgagctt
caattttaaggcttgcttggccaggcattgagcagacagtactgcacgta
ggtctatggggtggactttctatcactaatgtaaggagtttttggataga
atctcaggacctgatttgccctctggtctgtcccttagaggtcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181079509_181080430
seq2: B6Ng01-131H15.b_41_965

seq1  GAATTCTTATTGATTCATTTTCCTTCTGTCTCCCACAGACCTGTCTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTGATTCATTTTCCTTCTGTCTCCCACAGACCTGTCTGATG  50

seq1  TTTAAGACCAGGTGATGAGTCACCCACCCTGAGTTTTTTTTGTTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGACCAGGTGATGAGTCACCCACCCTGAGTTTTTTTTGTTTTGTTT  100

seq1  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCCCTTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCCCTTGGTA  150

seq1  GGCCAGACTGTCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGACTGTCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGT  200

seq1  GCTGGGATTAAAGGTGTGCGCCACCACTTCCCGGCCCTGAGATTTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGTGTGCGCCACCACTTCCCGGCCCTGAGATTTCTTTT  250

seq1  ATTCTTTAAGTGTAAGGTTTTTTTTTTTTTTAAGATTTATTTATTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAAGTGTAAGGTTTTTTTTTTTTTTAAGATTTATTTATTTTATA  300

seq1  TATGTGAGCATGCTGTCACTCTCTTCAGACACACCAGGAGAGGCCATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGCATGCTGTCACTCTCTTCAGACACACCAGGAGAGGCCATTGG  350

seq1  ATCCTATTACAGATGTATATGAGCCACCATGTGGTTGCTGGAGATGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTACAGATGTATATGAGCCACCATGTGGTTGCTGGAGATGAACT  400

seq1  CAGTACCCCTGGAAGAGCATCAGTGCTCTTAATCACTGAGCCATCGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCCCTGGAAGAGCATCAGTGCTCTTAATCACTGAGCCATCGCTCC  450

seq1  GGGCAAATTAAAAAAAATTTTTTTTGTGTGTATTCTTGGAGAAATACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAATTAAAAAAAATTTTTTTTGTGTGTATTCTTGGAGAAATACATG  500

seq1  ACTCTCATGAAATCAGGGAGCCCTGCTCATCCCTCACATGGCCAGTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATGAAATCAGGGAGCCCTGCTCATCCCTCACATGGCCAGTTTAG  550

seq1  GTCGTGGTATGTGAGGGTGTTTCTAAACACTCATGCAAGGCCAAGGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGGTATGTGAGGGTGTTTCTAAACACTCATGCAAGGCCAAGGCCCA  600

seq1  GGGAAGAGTGGTTCAGACAACTTCTCTTTCCTCTCCCAGGTTGTGTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGTGGTTCAGACAACTTCTCTTTCCTCTCCCAGGTTGTGTCAGG  650

seq1  TGGGGATGAGAACAATGAAGGCAGCTCAGGAGGTTCAGGGCAGCAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGAGAACAATGAAGGCAGCTCAGGAGGTTCAGGGCAGCAGCAGA  700

seq1  TGATGATGTCCTAAAAGACCAGAAGTCTAGGCAGACACAGAAAAGTCCTG  750
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  TGATGATGTCCT-AAAGACCATAAGTCTAGGCAGACACAGAAAAGTCCTG  749

seq1  CGAGAACACAGTGCCATGCTCACACAA-CCCAGCTGGAACACAGTGCCTG  799
      ||||||||||||| ||||||||||||| || |||||||||||||||||||
seq2  CGAGAACACAGTGTCATGCTCACACAATCCAAGCTGGAACACAGTGCCTG  799

seq1  GAGGCTTTCACACACGCTGTGA-GGGACTTCTATCACAGCAGAACCC-TG  847
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  GAGGCTTTCACACACGCTGTGAGGGGACTTCTATCACAGCAGAACCCTTG  849

seq1  GAATGAGAGTTTGGGGTTATCAGTTTAGTTGGAGATGAGCAGGGAAGCAC  897
      |||||||||||||||||||||||||||||| || ||||||| | ||||||
seq2  GAATGAGAGTTTGGGGTTATCAGTTTAGTTTGAAATGAGCATGTAAGCAC  899

seq1  AGTTAAAGAGGATCTGC-CTGGTAAG  922
      ||| ||  ||||||||| ||||| ||
seq2  AGTAAAGAAGGATCTGCTCTGGTCAG  925

seq1: chr2_181200014_181200914
seq2: B6Ng01-131H15.g_70_965 (reverse)

seq1  CAGGTACCTCTAAGGTGACAGGACAAGAGGGCACCTCAGGTCCTTGAGAT  50
      |||| |||||||||| |||| ||| ||||||||  |||||||| ||||||
seq2  CAGG-ACCTCTAAGG-GACA-GACCAGAGGGCAAATCAGGTCC-TGAGAT  46

seq1  TCTTTCCTAAAACTCCTTACCTTAGTGATTAGAAAGTCCACCCCATAGAT  100
      ||| ||| |||||||||||| ||||||| |||||||||||||||||||| 
seq2  TCTATCCAAAAACTCCTTACATTAGTGA-TAGAAAGTCCACCCCATAGA-  94

seq1  CCTACGTGCAGTACTGTCTGCTCAATGCCTGGCC-AGCAAGCCTTAAAAT  149
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTACGTGCAGTACTGTCTGCTCAATGCCTGGCCAAGCAAGCCTTAAAAT  144

seq1  TGAAGCTCACAGGAAACAAAGGAAGCCTGAGAAGTTGTCTCAGCCTTCAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCACAGGAAACAAAGGAAGCCTGAGAAGTTGTCTCAGCCTTCAC  194

seq1  AAACGTGAGCTGTGACATCTCTAGGCATGCTGGTGGCTGGTGCCATGGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGAGCTGTGACATCTCTAGGCATGCTGGTGGCTGGTGCCATGGAG  244

seq1  GGGACTGAGGGTAGAGGAGGATATTGGAGACTGGGTGGGAATATCCAAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGAGGGTAGAGGAGGATATTGGAGACTGGGTGGGAATATCCAAAG  294

seq1  AAAGTCTCAAGTCAGTGGAGAGCTGTGCCAACCCGGGCTTCCTGGTGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCAAGTCAGTGGAGAGCTGTGCCAACCCGGGCTTCCTGGTGCTC  344

seq1  CCAAAGGCGTGTGGAAATGGCAGATGACCTTAGAGAAACTTGGAACCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGCGTGTGGAAATGGCAGATGACCTTAGAGAAACTTGGAACCTTG  394

seq1  AGAGGTCACACAAGAAATTCTCTGTGGTGTACAATATGCAACTTTTCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCACACAAGAAATTCTCTGTGGTGTACAATATGCAACTTTTCTGA  444

seq1  AATGTTACTACAAAATAAAAGTTTACTTTTTTTTCTGAAAGGGGGAAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTACTACAAAATAAAAGTTTACTTTTTTTTCTGAAAGGGGGAAGAG  494

seq1  AAGCAAAACCAACCATTAACAAAAACAAAACAGCTCCTATCAGTTCTAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACCAACCATTAACAAAAACAAAACAGCTCCTATCAGTTCTAGG  544

seq1  TTTGAGCTCTGAGTGGCCACTCACAGTATATCTCAGCCCAGGTCCTTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTCTGAGTGGCCACTCACAGTATATCTCAGCCCAGGTCCTTATT  594

seq1  TCCAGTTTTAAGAATTAGTACTTGAGAATGATCAGTACTCAACCCACCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTTAAGAATTAGTACTTGAGAATGATCAGTACTCAACCCACCCC  644

seq1  CAAAACACTCTCATGGGTACAAACCGCACTCAGGGATACTGCTCTGATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACTCTCATGGGTACAAACCGCACTCAGGGATACTGCTCTGATAT  694

seq1  TTTTGAGTGCTGTTGTGTGGTGAACTCTCTGCCCTTAGGCTACACACAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTGCTGTTGTGTGGTGAACTCTCTGCCCTTAGGCTACACACAAG  744

seq1  ATTTACCTGAACACTGTTGAATTAGAGAGCCTGCCACCTTCCATGCTGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTGAACACTGTTGAATTAGAGAGCCTGCCACCTTCCATGCTGGC  794

seq1  CTCTATCTACATGGGCACAACCTTAATGGTGCTCCCATTTGGGGCTGGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTACATGGGCACAACCTTAATGGTGCTCCCATTTGGGGCTGGGG  844

seq1  AAATAGTTCAGTTGGTGAAGTGCTTGCCATGCTAGCACAAAGACTTGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTCAGTTGGTGAAGTGCTTGCCATGCTAGCACAAAGACTTGAAT  894

seq1  TC  901
      ||
seq2  TC  896