BAC Information

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BAC

Clone NameB6Ng01-131N16
Chromosome2 (Build37)X (Build37)
Map Location 142,776,691 - 142,777,698100,283,713 - 100,284,821
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131N16.bB6Ng01-131N16.g
ACCDH932806DH932807
length9951,101
definitionDH932806|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N16, 5' end.DH932807|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,691 - 142,777,698)(100,283,713 - 100,284,821)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttgtagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcaaagcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctactggtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagaattgaagtttttatcata
tagatctttcacttccttagtagagtcacaccaagctattttatattatt
ttgtgactactgacaggtgttgtttccctatttctttctcagcct
gaattctcttttatgcacgctgtttgtggttgaaccaagtgtccctttcc
aaccataagaatctcttgcaaagcaatctggctgtgccataatagtcgga
gttgaacaattatttcactaaaactagtccatggagcaccaaaggctgtt
acaaaataaaattaagtagcatttatggctagagaagtgactgagtagtt
tcttagctccacatccttgccagcgtgagctgtcacttgtgttattgatc
ttagccattctgaaaggtgaaggagtctcagggcccttttgatatgcatt
tccctcatggttaaatatgttgggcatttctttaagtgttgctaggccat
ttgagattcttctattaagattttcctgtttagatctgtatcccatttta
aaattgaattatttggtttgatgatgtctagtttcttgagttctttctat
attttagatatttgccttctattggttgtcgagttactggaaatcttttt
ttatcctgtaagctgatgttttgtcctattgatggtgtcctttgctttgc
agaagcttttgagtttcataaggttccattgattgattgttgatcttagt
acctgtgtgatttgttttctgctcaagaagctgtctgctgtgccaatgag
ttcaaggctattcccccactttcttttctattagatttagtgtatctcgt
tttatgttcaggagtttgattcacttgtacttgagttttgtgcaggacga
tagatatatatctacttgcattctcctatatgtcaacatccggttagatc
agcaccatttgtttgagatgttttcttttgtccattgtgtatttctggct
tctttgtcaaaaatcaagtgtccgtaagtgtgtaaatctacttcagagtt
ttcagtttgattccattgattaactttatacttactggttgtatgtctgt
tgtgagacacagatttgtctgtgcacagaatgcatttctagtcacaagtc
tagaggttgaaaagcaggacaaggctcctcgatgggctaaataactgggc
atggaactcagcttctgtctgagtgtagaagttattggtaaaagtctggt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776691_142777698
seq2: B6Ng01-131N16.b_52_599 (reverse)

seq1  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCAT  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCAT  100

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  150

seq1  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250

seq1  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAA  300
      |||||||||| |||||||||||||||||||||| ||||||||||| ||||
seq2  GGGGAAAAGCTTTGAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAA  300

seq1  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  350

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400

seq1  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGA  550
      |||||||||||||||||||||||||||||| ||            ||| |
seq2  TCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CTGAACA  540

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  600
      ||||    |||                                       
seq2  AAGA----ATTC--------------------------------------  548

seq1  AGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  650
                                                        
seq2  --------------------------------------------------  548

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  700
                                                        
seq2  --------------------------------------------------  548

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTC  750
                                                        
seq2  --------------------------------------------------  548

seq1  CTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  800
                                                        
seq2  --------------------------------------------------  548

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATA  850
                                                        
seq2  --------------------------------------------------  548

seq1  AGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAA  900
                                                        
seq2  --------------------------------------------------  548

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  950
                                                        
seq2  --------------------------------------------------  548

seq1  CCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACA  1000
                                                        
seq2  --------------------------------------------------  548

seq1  AAGAATTC  1008
              
seq2  --------  548

seq1: chrX_100283713_100284821
seq2: B6Ng01-131N16.g_68_1168

seq1  GAATTCTCTTTTATGCACGCTGTTTGTGGTTGAACCAAGTGTCCCTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTATGCACGCTGTTTGTGGTTGAACCAAGTGTCCCTTTCC  50

seq1  AACCATAAGAATCTCTTGCAAAGCAATCTGGCTGTGCCATAATAGTCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAGAATCTCTTGCAAAGCAATCTGGCTGTGCCATAATAGTCGGA  100

seq1  GTTGAACAATTATTTCACTAAAACTAGTCCATGGAGCACCAAAGGCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACAATTATTTCACTAAAACTAGTCCATGGAGCACCAAAGGCTGTT  150

seq1  ACAAAATAAAATTAAGTAGCATTTATGGCTAGAGAAGTGACTGAGTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAAATTAAGTAGCATTTATGGCTAGAGAAGTGACTGAGTAGTT  200

seq1  TCTTAGCTCCACATCCTTGCCAGCGTGAGCTGTCACTTGTGTTATTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTCCACATCCTTGCCAGCGTGAGCTGTCACTTGTGTTATTGATC  250

seq1  TTAGCCATTCTGAAAGGTGAAGGAGTCTCAGGGCCCTTTTGATATGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCATTCTGAAAGGTGAAGGAGTCTCAGGGCCCTTTTGATATGCATT  300

seq1  TCCCTCATGGTTAAATATGTTGGGCATTTCTTTAAGTGTTGCTAGGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATGGTTAAATATGTTGGGCATTTCTTTAAGTGTTGCTAGGCCAT  350

seq1  TTGAGATTCTTCTATTAAGATTTTCCTGTTTAGATCTGTATCCCATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTCTTCTATTAAGATTTTCCTGTTTAGATCTGTATCCCATTTTA  400

seq1  AAATTGAATTATTTGGTTTGATGATGTCTAGTTTCTTGAGTTCTTTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAATTATTTGGTTTGATGATGTCTAGTTTCTTGAGTTCTTTCTAT  450

seq1  ATTTTAGATATTTGCCTTCTATTGGTTGTCGAGTTACTGGAAATCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGATATTTGCCTTCTATTGGTTGTCGAGTTACTGGAAATCTTTTT  500

seq1  TTATCCTGTAAGCTGATGTTTTGTCCTATTGATGGTGTCCTTTGCTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGTAAGCTGATGTTTTGTCCTATTGATGGTGTCCTTTGCTTTGC  550

seq1  AGAAGCTTTTGAGTTTCATAAGGTTCCATTGATTGATTGTTGATCTTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTTTGAGTTTCATAAGGTTCCATTGATTGATTGTTGATCTTAGT  600

seq1  ACCTGTGTGATTTGTTTTCTGCTCAAGAAGCTGTCTGCTGTGCCAATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTGATTTGTTTTCTGCTCAAGAAGCTGTCTGCTGTGCCAATGAG  650

seq1  TTCAAGGCTATTCCCCCACTTTCTTTTCTATTAGATTTAGTGTATCTCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCTATTCCCCCACTTTCTTTTCTATTAGATTTAGTGTATCTCGT  700

seq1  TTTATGTTCAGGAGTTTGATTCACTTGTACTTGAGTTTTGTGCAGGACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTCAGGAGTTTGATTCACTTGTACTTGAGTTTTGTGCAGGACGA  750

seq1  TAGATATATATCTACTTGCATTCTCCTATATGTCAACATCCGGTTAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATATCTACTTGCATTCTCCTATATGTCAACATCCGGTTAGATC  800

seq1  AGCACCATTTGTTTGAGATGTTTTCTTTTGTCCATTGTGTATTTCTGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATTTGTTTGAGATGTTTTCTTTTGTCCATTGTGTATTTCTGGCT  850

seq1  TCTTTGTCAAAAATCAAGTGTCCGTAAGTGTGTAAATCTACTTCAGAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCAAAAATCAAGTGTCCGTAAGTGTGTAAATCTACTTCAGAGTT  900

seq1  TTCAGTTTGATTCCATTGATTAACTTTATACTTACTGGTTGTATGTCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTGATTCCATTGATTAACTTTATACTTACTGGTTGTATGTCTGT  950

seq1  TGTGGAGACAACAGATTTGTCTGTGCACAGAATGCATTTCTAGTCACAAG  1000
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGT-GAGAC-ACAGATTTGTCTGTGCACAGAATGCATTTCTAGTCACAAG  998

seq1  TCTAGAGGTTGAAAAGGCAGGGACAAGGCTCCTCAGATGGGCTAAATTAC  1050
      ||||||||||||||| ||| |||||||||||||| |||||||||||| ||
seq2  TCTAGAGGTTGAAAA-GCA-GGACAAGGCTCCTC-GATGGGCTAAATAAC  1045

seq1  TGGGCATGGGACTCAAGCTCTGTCTGAGGGTAGGAGGTTTATAGGTAAGA  1100
      ||||||||| |||||   |||||||||| |||| ||  |||| ||||| |
seq2  TGGGCATGGAACTCAGCTTCTGTCTGAGTGTAGAAG--TTATTGGTAA-A  1092

seq1  AGTCTGGTA  1109
      |||||||||
seq2  AGTCTGGTA  1101