BAC Information

Click to search

BAC

Clone NameB6Ng01-131P02
Chromosome2 (Build37)
Map Location 43,700,631 - 43,819,687
singlet/doubletdoublet
Overlap geneArhgap15
Upstream geneLOC100041228, LOC100041245, Kynu
Downstream geneGtdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131P02.bB6Ng01-131P02.g
ACCDH932874DH932875
length1,225409
definitionDH932874|Mus musculus domesticus DNA, BAC clone: B6Ng01-131P02, 5' end.DH932875|Mus musculus domesticus DNA, BAC clone: B6Ng01-131P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,700,631 - 43,701,878)(43,819,273 - 43,819,687)
sequence
gaattcatttgcagcatataaagatctctatgcaatagcctgggaagttt
atttgaaggatggaaaatttgaaccatatttgtagttcaaaataaaatca
tttagaaaaaaagaagaaaatcatgaacagagtatggtgcgggaaatttt
taaatgataagaaaaaaaaaaaaagctccctggggtgaggggcaggaaca
acagagatgttcaagaatatacaacaagttggtcattgggtcaagaaaga
tagtagctatgtttttatatgggggatttaaaatagtcatgtctgtttta
gaatttttgctaacacatcaaatatattctatatttagatttatagtatg
aatatgcaagtaattaaggtgcatggatgtactcaaagtaaaaaacattt
ccttgtgagtgtattactattataactaagtagaataaatattctaatta
gctacacaatcaaacaatacttaattgaattatacaatatgttactagaa
agatgttctggcttacattagagaataaaatatgctttggcttgatggct
atcatggacagtgtctatatttatttcaaagaaggcaaatggaagtgtcg
ctcataattccagtgcttacaaaagctattctaatattaaataggaaata
gagctggcatcttcccaaagactgtttcttgtcagtagcctggaagtcat
cctacctcaaaagtgccagagggtgagtaagatcaaacgcatagcacctt
ggtcttctctgtctccagagaatccccaggcaagctttaacagagcaaca
ggtgagaataattgactgagcagctcagcctccatgcccttctcttccat
agactacatcccctggtcatgacctcaggtgtgtggagggtgcagcagta
ccacagtcaagatgagtaaactaggatccttttcttacctgaccaaccac
atgagctctcacctctaaccccactcaagatattccagatgaatatgttc
ttcatggggtttgaggtggtcagaataagatagcattggccagtgtaccc
ttcagcttccagacatagaagtcatcaaacaaggtgacagcctcttacgg
tgctctctgacccctcatctgtattcattacaactagaaagggaggattg
gaagcatgctgaacagagtacccctcatgctatgttcgaccacgcagact
ctgtgcagttgttgtgtgcgcaaaa
ctaagaagtttgtctatgccatgtgttcatagggtaatagcaccacaaag
agtctgtgatgatgtttcaaactgcatcagcatcactggggaaagtattc
attaaagcttttcagaaaagtcaaattagaggtggggaaaatttctccta
aggagcaaccattaatcacattgggtttcttcctccccttgctttcccat
tattcacaaaggattgccaaagatgttgtatttttattttttaaactgct
cccttatttaattatacagaatatatttgttcaggttgccagtacaggcc
gtgagtattcatccctggatgatgttaactgcatctgcagcctcaatagt
ctctctctctctctctctctctctctctctctctctctctctctctctct
ctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_43700631_43701878
seq2: B6Ng01-131P02.b_48_1272

seq1  GAATTCATTTGCAGCATATAAAGATCTCTATGCAATAGCCTGGGAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCAGCATATAAAGATCTCTATGCAATAGCCTGGGAAGTTT  50

seq1  ATTTGAAGGATGGAAAATTTGAACCATATTTGTAGTTCAAAATAAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGGATGGAAAATTTGAACCATATTTGTAGTTCAAAATAAAATCA  100

seq1  TTTAGAAAAAAAGAAGAAAATCATGAACAGAGTATGGTGCGGGAAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAAAAGAAGAAAATCATGAACAGAGTATGGTGCGGGAAATTTT  150

seq1  TAAATGATAAGAAAAAAAAAAAAAGCTCCCTGGGGTGAGGGGCAGGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATAAGAAAAAAAAAAAAAGCTCCCTGGGGTGAGGGGCAGGAACA  200

seq1  ACAGAGATGTTCAAGAATATACAACAAGTTGGTCATTGGGTCAAGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATGTTCAAGAATATACAACAAGTTGGTCATTGGGTCAAGAAAGA  250

seq1  TAGTAGCTATGTTTTTATATGGGGGATTTAAAATAGTCATGTCTGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCTATGTTTTTATATGGGGGATTTAAAATAGTCATGTCTGTTTTA  300

seq1  GAATTTTTGCTAACACATCAAATATATTCTATATTTAGATTTATAGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTGCTAACACATCAAATATATTCTATATTTAGATTTATAGTATG  350

seq1  AATATGCAAGTAATTAAGGTGCATGGATGTACTCAAAGTAAAAAACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAAGTAATTAAGGTGCATGGATGTACTCAAAGTAAAAAACATTT  400

seq1  CCTTGTGAGTGTATTACTATTATAACTAAGTAGAATAAATATTCTAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGAGTGTATTACTATTATAACTAAGTAGAATAAATATTCTAATTA  450

seq1  GCTACACAATCAAACAATACTTAATTGAATTATACAATATGTTACTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAATCAAACAATACTTAATTGAATTATACAATATGTTACTAGAA  500

seq1  AGATGTTCTGGCTTACATTAGAGAATAAAATATGCTTTGGCTTGATGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCTGGCTTACATTAGAGAATAAAATATGCTTTGGCTTGATGGCT  550

seq1  ATCATGGACAGTGTCTATATTTATTTCAAAGAAGGCAAATGGAAGTGTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGACAGTGTCTATATTTATTTCAAAGAAGGCAAATGGAAGTGTCG  600

seq1  CTCATAATTCCAGTGCTTACAAAAGCTATTCTAATATTAAATAGGAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAATTCCAGTGCTTACAAAAGCTATTCTAATATTAAATAGGAAATA  650

seq1  GAGCTGGCATCTTCCCAAAGACTGTTTCTTGTCAGTAGCCTGGAAGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCATCTTCCCAAAGACTGTTTCTTGTCAGTAGCCTGGAAGTCAT  700

seq1  CCTACCTCAAAAGTGCCAGAGGGTGAGTAAGATCAAACGCATAGCACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCAAAAGTGCCAGAGGGTGAGTAAGATCAAACGCATAGCACCTT  750

seq1  GGTCTTCTCTGTCTCCAGAGAATCCCCAGGCAAGCTTTAACAGAGCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTCTGTCTCCAGAGAATCCCCAGGCAAGCTTTAACAGAGCAACA  800

seq1  GGTGAGAATAATTGACTGAGCAGCTCAGCCTCCATGCCCTTCTCTTCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAATAATTGACTGAGCAGCTCAGCCTCCATGCCCTTCTCTTCCAT  850

seq1  AGACTACATCCCCTGGTCATGACCTCAGGTGTGTGGAGGGTGCAGCAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACATCCCCTGGTCATGACCTCAGGTGTGTGGAGGGTGCAGCAGTA  900

seq1  CCACAGTCAAGATGAGTAAACTAGGATCC-TTTCTTACCTGACCAACCAC  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCACAGTCAAGATGAGTAAACTAGGATCCTTTTCTTACCTGACCAACCAC  950

seq1  ATGAGCTCTCACCTCTAACCCCACTCAAGATATTCCAGATGAATATGTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTCTCACCTCTAACCCCACTCAAGATATTCCAGATGAATATGTTC  1000

seq1  TTCATTGGGTTTGAGGTGGTCAG-ATAAGATAGCATTGGCCAGTGTTACC  1048
      ||||| ||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TTCATGGGGTTTGAGGTGGTCAGAATAAGATAGCATTGGCCAGTG-TACC  1049

seq1  CTTCAGCTTCACAGACAATAGGAAGGTCATCAAAACGAGGTGACAGCCTC  1098
      |||||||||| ||||| ||||  | |||||| |||| |||||||||||||
seq2  CTTCAGCTTC-CAGAC-ATAG--AAGTCATC-AAACAAGGTGACAGCCTC  1094

seq1  TTACGGTGGCTCTCTGACCCCCTCCATCTGTATTCCATTAACCAACCTAG  1148
      ||||||| |||||||||||||   |||||||||| |||||  ||| ||||
seq2  TTACGGT-GCTCTCTGACCCC--TCATCTGTATT-CATTA--CAA-CTAG  1137

seq1  -AAGGAAGGATCTGAAGCATGCTGAGACAGAGTAGCCCCTTTCATGCCTA  1197
       |||| |||||  |||||||||||| |||||||| |||   ||||| |||
seq2  AAAGGGAGGATTGGAAGCATGCTGA-ACAGAGTACCCC---TCATG-CTA  1182

seq1  TTGTCAGAAACACAACGCATGAACTACTGTGCAGTTTTTGTTTGCGTAAA  1247
      |  ||      || |||||   ||| |||||||||| |||| |||| |||
seq2  TGTTC-----GACCACGCA--GACT-CTGTGCAGTTGTTGTGTGCGCAAA  1224

seq1  A  1248
      |
seq2  A  1225

seq1: chr2_43819273_43819687
seq2: B6Ng01-131P02.g_69_483 (reverse)

seq1  GAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGACTATTGAGGCTGCAGATGCAGTTAACATCATCCAGGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGACTATTGAGGCTGCAGATGCAGTTAACATCATCCAGGGATG  100

seq1  AATACTCACGGCCTGTACTGGCAACCTGAACAAATATATTCTGTATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCACGGCCTGTACTGGCAACCTGAACAAATATATTCTGTATAATT  150

seq1  AAATAAGGGAGCAGTTTAAAAAATAAAAATACAACATCTTTGGCAATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGGAGCAGTTTAAAAAATAAAAATACAACATCTTTGGCAATCCT  200

seq1  TTGTGAATAATGGGAAAGCAAGGGGAGGAAGAAACCCAATGTGATTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATAATGGGAAAGCAAGGGGAGGAAGAAACCCAATGTGATTAATG  250

seq1  GTTGCTCCTTAGGAGAAATTTTCCCCACCTCTAATTTGACTTTTCTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCCTTAGGAGAAATTTTCCCCACCTCTAATTTGACTTTTCTGAAA  300

seq1  AGCTTTAATGAATACTTTCCCCAGTGATGCTGATGCAGTTTGAAACATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAATGAATACTTTCCCCAGTGATGCTGATGCAGTTTGAAACATCA  350

seq1  TCACAGACTCTTTGTGGTGCTATTACCCTATGAACACATGGCATAGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACTCTTTGTGGTGCTATTACCCTATGAACACATGGCATAGACAA  400

seq1  ACTTCTTAGGAATTC  415
      |||||||||||||||
seq2  ACTTCTTAGGAATTC  415