BAC Information

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BAC

Clone NameB6Ng01-132F13
Chromosome2 (Build37)
Map Location 25,745,249 - 25,912,427
singlet/doubletdoublet
Overlap geneKcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a
Upstream geneArrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1
Downstream geneC330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132F13.bB6Ng01-132F13.g
ACCDH933172DH933173
length287975
definitionDH933172|Mus musculus domesticus DNA, BAC clone: B6Ng01-132F13, 5' end.DH933173|Mus musculus domesticus DNA, BAC clone: B6Ng01-132F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,745,249 - 25,745,535)(25,911,446 - 25,912,427)
sequence
cttttttcatttgttgtccactttcaggaaaactagggttcccaggccaa
aaaccccctcacgtgctattgagaacaaacctctcatcactgtccgggtc
agaggagggaagagtctctgtagatgtttgaggagaagcagaggttataa
ctaactcagaacacttttctgggtctgtttcaccttttccacgtcccaaa
ggctcaggacttctgcttgcacctccctagaggatccaagtccttcacag
tcactagcagggatagtaggggaggggtaggtgatgg
gaattctgtattgttttctataccagttgcttcagctaacatctgatttg
gtgtcttactttgcccttggatgtagatgcagccagtgatgtatgaaagg
caattgaggagagactctgaggggtcctttgtggtgtgactgcaggtgtg
ggcctcgaagaaaactagatgtgtggtgtttgtttagaacctaaaggaag
gcagaaaggggctgtgagagctggcaagctgacagggccagtcccctcca
agggactgtggggtgcctgctgctacctgcttcaacagcaggaccttccc
aagcccagtgcatgttgtgctctgccccactgtcctctgcttgggttccc
taaagatggtgattcttagctgacttggggaagagcaggtggcctatcaa
ccagctgaaaactcgaaagaccctgttagaacctgcttgccgcagatccc
agatgggaatggcgacaagcacatgatctgtcagctttacgcacttcact
tcgtggaaaggtgctgctgctgggtggttctgcatgtcaggcagctcagc
ctatgctgctagaagaagggctcagtacaaagtgtttcaaaagtggcaaa
ggtgtttgctttgtttgttttgttttcctagaaaggaaaaggatgcagga
tctaaaaccttctgattgaatagcctctgcttgtgtcccattggtcccct
cactgcaagctcgattgtgatttttatgtcaaaggaagccaaaatttgca
atactatttttagcagacaaaaagataactcggtttaaaatgtataaata
tttttgacttgaacattttgggtgtctctgggttgcaagaagaacattaa
tcccttcagggggatgttggagacaggaccggaggaaggggtttgttttg
aggcactgtcaggggtaaagtagcatcttaattcatgactgttaggatta
agttaaaaagtcgttcttccctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_25745249_25745535
seq2: B6Ng01-132F13.b_51_337

seq1  CTTTTTTCATTTGTTGTCCACTTTCAGGAAAACTAGGGTTCCCAGGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCATTTGTTGTCCACTTTCAGGAAAACTAGGGTTCCCAGGCCAA  50

seq1  AAACCCCCTCACGTGCTATTGAGAACAAACCTCTCATCACTGTCCGGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCTCACGTGCTATTGAGAACAAACCTCTCATCACTGTCCGGGTC  100

seq1  AGAGGAGGGAAGAGTCTCTGTAGATGTTTGAGGAGAAGCAGAGGTTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGGAAGAGTCTCTGTAGATGTTTGAGGAGAAGCAGAGGTTATAA  150

seq1  CTAACTCAGAACACTTTTCTGGGTCTGTTTCACCTTTTCCACGTCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCAGAACACTTTTCTGGGTCTGTTTCACCTTTTCCACGTCCCAAA  200

seq1  GGCTCAGGACTTCTGCTTGCACCTCCCTAGAGGATCCAAGTCCTTCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGGACTTCTGCTTGCACCTCCCTAGAGGATCCAAGTCCTTCACAG  250

seq1  TCACTAGCAGGGATAGTAGGGGAGGGGTAGGTGATGG  287
      |||||||||||||||||||||||||||||||||||||
seq2  TCACTAGCAGGGATAGTAGGGGAGGGGTAGGTGATGG  287

seq1: chr2_25911446_25912427
seq2: B6Ng01-132F13.g_66_1040 (reverse)

seq1  GGTAGGGGAGCACTGACTTTATTAACTTAATTCCTAACAGTCATGAATTA  50
      ||||||| || || |||||| ||||||||| |||||||||||||||||||
seq2  GGTAGGGAAGAAC-GACTTT-TTAACTTAA-TCCTAACAGTCATGAATTA  47

seq1  TGATGCTACTTTAACCCCTGGACAGTGCCTTCAAAACAACCCCCTTCCTC  100
       ||||||||||| |||||| ||||||||| ||||||||| ||||||||||
seq2  AGATGCTACTTT-ACCCCT-GACAGTGCC-TCAAAACAAACCCCTTCCTC  94

seq1  CGGTCCTGTTCTCCAAACATCCCCCTGAAGGGATTAATGTTCTTCTTGC-  149
      |||||||| ||||| |||||||||||||||||||||||||||||||||| 
seq2  CGGTCCTG-TCTCC-AACATCCCCCTGAAGGGATTAATGTTCTTCTTGCA  142

seq1  ACCCAGAGACACCCAAAATGTTCAAGTCAAAAATATTTATACATTTTATA  199
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACCCAGAGACACCCAAAATGTTCAAGTCAAAAATATTTATACATTTTAAA  192

seq1  CCGAGTTATCTTTTTGTCTGCTAAAAATAGTATTGCAAATTTTGGCTTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTTATCTTTTTGTCTGCTAAAAATAGTATTGCAAATTTTGGCTTCC  242

seq1  TTTGACATAAAAATCACAATCGAGCTTGCAGTGAGGGGACCAATGGGACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATAAAAATCACAATCGAGCTTGCAGTGAGGGGACCAATGGGACA  292

seq1  CAAGCAGAGGCTATTCAATCAGAAGGTTTTAGATCCTGCATCCTTTTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAGGCTATTCAATCAGAAGGTTTTAGATCCTGCATCCTTTTCCT  342

seq1  TTCTAGGAAAACAAAACAAACAAAGCAAACACCTTTGCCACTTTTGAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAAAACAAAACAAACAAAGCAAACACCTTTGCCACTTTTGAAAC  392

seq1  ACTTTGTACTGAGCCCTTCTTCTAGCAGCATAGGCTGAGCTGCCTGACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTACTGAGCCCTTCTTCTAGCAGCATAGGCTGAGCTGCCTGACAT  442

seq1  GCAGAACCACCCAGCAGCAGCACCTTTCCACGAAGTGAAGTGCGTAAAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACCACCCAGCAGCAGCACCTTTCCACGAAGTGAAGTGCGTAAAGC  492

seq1  TGACAGATCATGTGCTTGTCGCCATTCCCATCTGGGATCTGCGGCAAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATCATGTGCTTGTCGCCATTCCCATCTGGGATCTGCGGCAAGCA  542

seq1  GGTTCTAACAGGGTCTTTCGAGTTTTCAGCTGGTTGATAGGCCACCTGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAACAGGGTCTTTCGAGTTTTCAGCTGGTTGATAGGCCACCTGCT  592

seq1  CTTCCCCAAGTCAGCTAAGAATCACCATCTTTAGGGAACCCAAGCAGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAAGTCAGCTAAGAATCACCATCTTTAGGGAACCCAAGCAGAGG  642

seq1  ACAGTGGGGCAGAGCACAACATGCACTGGGCTTGGGAAGGTCCTGCTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGGCAGAGCACAACATGCACTGGGCTTGGGAAGGTCCTGCTGTT  692

seq1  GAAGCAGGTAGCAGCAGGCACCCCACAGTCCCTTGGAGGGGACTGGCCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGTAGCAGCAGGCACCCCACAGTCCCTTGGAGGGGACTGGCCCT  742

seq1  GTCAGCTTGCCAGCTCTCACAGCCCCTTTCTGCCTTCCTTTAGGTTCTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTGCCAGCTCTCACAGCCCCTTTCTGCCTTCCTTTAGGTTCTAA  792

seq1  ACAAACACCACACATCTAGTTTTCTTCGAGGCCCACACCTGCAGTCACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACCACACATCTAGTTTTCTTCGAGGCCCACACCTGCAGTCACAC  842

seq1  CACAAAGGACCCCTCAGAGTCTCTCCTCAATTGCCTTTCATACATCACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGACCCCTCAGAGTCTCTCCTCAATTGCCTTTCATACATCACTG  892

seq1  GCTGCATCTACATCCAAGGGCAAAGTAAGACACCAAATCAGATGTTAGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCTACATCCAAGGGCAAAGTAAGACACCAAATCAGATGTTAGCT  942

seq1  GAAGCAACTGGTATAGAAAACAATACAGAATTC  982
      |||||||||||||||||||||||||||||||||
seq2  GAAGCAACTGGTATAGAAAACAATACAGAATTC  975