BAC Information

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BAC

Clone NameB6Ng01-132I13
Chromosome2 (Build37)
Map Location 137,731,656 - 137,842,492
singlet/doubletdoublet
Overlap genenone
Upstream gene2210009G21Rik, Jag1
Downstream geneBtbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132I13.bB6Ng01-132I13.g
ACCDH933312DH933313
length1,1711,153
definitionDH933312|Mus musculus domesticus DNA, BAC clone: B6Ng01-132I13, 5' end.DH933313|Mus musculus domesticus DNA, BAC clone: B6Ng01-132I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,731,656 - 137,732,517)(137,841,330 - 137,842,492)
sequence
gaattcttaaataataaatgaaatgcaggcacatgtctatataaataaat
aatttgttctagtgttgctaatatgtatatttgtttagagtttgtgtctt
gtgtcttagtgtttcactgctgtgaagagacaccatgaccaaggcaactc
ttataaaggaaatcatttaattagtgttggcttacagttacagaggttta
gtccattgccattatggtaggaagaatggtggcatgcaggcagatatagt
gctggagaaatagctgaaagttcaatatctggttccacagacaggatgca
gagagctcccttgagcttctaagaccacaaagcctaccaactattgacac
agttcctccaacaaagccacacatactccaaaaaagccacacttcctaat
agtgtcattctttatggaccaagtattcaaagacatttgctgggggccat
tcctatttagaccaccacagctagccacctaggattggaatagctatcag
atgctttattcctagagaaaactgtttcttcctctgtcagcaacaattaa
ttgcctgtagctcttcatctaagggtaagattttgtgagattttctctat
ccctgttggcacattatatggtgctgtcattgttcagctctttgttcaga
tggccatattcttgagatttcatgggtatggcttctttgccatgaagaga
agaccctacctcatgccagacagtcaggtctaactttaaaaatcatctca
tccccatagtccatgatgtcccctgtgtctgagatacatagtgtcttgta
gatgaatgacctggaactattcctgttgtagcaataactgactagaccat
ctaaatgggagaagtctgtgggaccacagattcagagatttcagtatatc
atagttctagaaacagctctgtggtagggacagctctatccttggcagca
gaatgtgcagtgcaaacagggggctgttaccagaggagatgtttcctttg
aagtcctgcttctaagaaatactttcacagccaggattcatctaaagctg
tgcagtctttcagataagcacccaccaacttgtagtagcacctcacatgg
gcctgtgaggggcaatccggattccagccataagcttgaatctggcagaa
ctgatcttgtttccatcttct
gaattctatgctaactttaacaatgcatgtggtgacttcagcttcttcca
aacagataagttgtgacttctttcattatttccctgaaaggtcttttagt
ttttaatctttccctgaaaagtaaaactaacttcagtaattggatactat
cttactgcccacctggagtgagtttctagttgatggatggggcctagtct
tctctgatcctgcacaggaaggtgatctccagctaagccatgccacacca
ttaggtcctgttgcaacccatgcctttaaacaatgtgactggaaacaagg
cctctattacctccaataatgtcagtgaatacagcatcttcgcaacttta
tgtcctaattaaaagagtgtcatatttagaaaggaatttaagtgacagtg
tttatcaagctgtttgcttagtgatctctttagatgcactgttacacaaa
aactgtcttaattaaggttaattggaacataattaaaatcattgctgatg
gaaaagatcccatgagtggtaccactgtgaggatccttcatgttcatact
gttagactaagccactgcaggaaaccaaatgtcaaagcatgctttgttcc
caacacaggctatgcctttgcttcctcctagttggaggtgtgactattac
tcatgtacttggaaatctcccgaaggctctggacaaagcaattcattttt
aaaagcattgtatatatttaagagttacatcattatgttgtgaggtactt
taagaagttaaatgcagctatgccagataacctatcaatcattttacata
gttttcttttaatgtttcttgtaaaagcactatttataattttgcgaaga
gtccctgaagccaggtctgataatgaacagccatgatcctagcactttga
cagatggaaacagacaatcagagttcaagggcagcctcaattacaaagca
aaccaagagacataagccccgcttcacaatcagacacacaaaagaaacag
agcctcatagtatttctctaaggtggccttactcatattctacagcagtc
tggaaggaagcctcccttttttaccccctcacccacagttcaatactggt
caatctctgttcctatcctccccttttttattttagcccactaattcagg
cct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_137731656_137732517
seq2: B6Ng01-132I13.b_367_1218

seq1  TAAGACCACAAAGCCTACCAACTATTGACACAGTTCCTCCAACAAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCACAAAGCCTACCAACTATTGACACAGTTCCTCCAACAAAGCCA  50

seq1  CACATACTCCAAAAAAGCCACACTTCCTAATAGTGTCATTCTTTATGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACTCCAAAAAAGCCACACTTCCTAATAGTGTCATTCTTTATGGAC  100

seq1  CAAGTATTCAAAGACATTTGCTGGGGGCCATTCCTATTTAGACCACCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTCAAAGACATTTGCTGGGGGCCATTCCTATTTAGACCACCACA  150

seq1  GCTAGCCACCTAGGATTGGAATAGCTATCAGATGCTTTATTCCTAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCACCTAGGATTGGAATAGCTATCAGATGCTTTATTCCTAGAGAA  200

seq1  AACTGTTTCTTCCTCTGTCAGCAACAATTAATTGCCTGTAGCTCTTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTCTTCCTCTGTCAGCAACAATTAATTGCCTGTAGCTCTTCATC  250

seq1  TAAGGGTAAGATTTTGTGAGATTTTCTCTATCCCTGTTGGCACATTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTAAGATTTTGTGAGATTTTCTCTATCCCTGTTGGCACATTATAT  300

seq1  GGTGCTGTCATTGTTCAGCTCTTTGTTCAGATGGCCATATTCTTGAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTCATTGTTCAGCTCTTTGTTCAGATGGCCATATTCTTGAGATT  350

seq1  TCATGGGTATGGCTTCTTTGCCATGAAGAGAAGACCCTACCTCATGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGTATGGCTTCTTTGCCATGAAGAGAAGACCCTACCTCATGCCAG  400

seq1  ACAGTCAGGTCTAACTTTAAAAATCATCTCATCCCCATAGTCCATGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGGTCTAACTTTAAAAATCATCTCATCCCCATAGTCCATGATGT  450

seq1  CCCCTGTGTCTGAGATACATAGTGTCTTGTAGATGAATGACCTGGAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGTCTGAGATACATAGTGTCTTGTAGATGAATGACCTGGAACTA  500

seq1  TTCCTGTTGTAGCAATAACTGACTAGACCATCTAAATGGGAGAAGTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTGTAGCAATAACTGACTAGACCATCTAAATGGGAGAAGTCTGT  550

seq1  GGGACCACAGATTCAGAGATTTCAGTATATCATAGTTCTAGAAACAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCACAGATTCAGAGATTTCAGTATATCATAGTTCTAGAAACAGCTC  600

seq1  TGTGGTAGGGACAGCTCTATCCTTGGCAGCAGGAATGTGCAGTGGAAAAC  650
      ||||||||||||||||||||||||||||||| ||||||||||| | ||||
seq2  TGTGGTAGGGACAGCTCTATCCTTGGCAGCA-GAATGTGCAGT-GCAAAC  648

seq1  AGGGGGCTGTTACCAGAGGAAGATGTATCCTTTGAAGTCCTGCTTCTACA  700
      ||||||||||||||||||| |||||| ||||||||||||||||||||| |
seq2  AGGGGGCTGTTACCAGAGG-AGATGTTTCCTTTGAAGTCCTGCTTCTA-A  696

seq1  GAAATACTTCCACAGCCAGGATTCATCTAAAAGCTGTGCAGTCTTCAAGA  750
      ||||||||| |||||||||||||||||| ||||||||||||||||  |||
seq2  GAAATACTTTCACAGCCAGGATTCATCT-AAAGCTGTGCAGTCTTTCAGA  745

seq1  T-AGCA-CCACCAACTTGTAGTAAGCA-CTCACATGGGCCTGTGAGGGGC  797
      | |||| ||||||||||||||| |||| ||||||||||||||||||||||
seq2  TAAGCACCCACCAACTTGTAGT-AGCACCTCACATGGGCCTGTGAGGGGC  794

seq1  AATCCAGATTCCAGCCATAAAAGCTTGAGTCTGCCAGAACATGAGTCTTG  847
      ||||| ||||||||||||  |||||||| |||| |||||| ||| |||||
seq2  AATCCGGATTCCAGCCAT--AAGCTTGAATCTGGCAGAAC-TGA-TCTTG  840

seq1  TTTTTTCCATCTTCT  862
         ||||||||||||
seq2  ---TTTCCATCTTCT  852

seq1: chr2_137841330_137842492
seq2: B6Ng01-132I13.g_68_1220 (reverse)

seq1  AGGCCTGAA-TAGTAGGCTAAAATAAAGAGGGGGAGGATGAGAACAGAGA  49
      ||||||||| |||| |||||||||||| | |||||||||  |||||||||
seq2  AGGCCTGAATTAGTGGGCTAAAATAAAAAAGGGGAGGATAGGAACAGAGA  50

seq1  TGAACAAGTATTGAAACTGTGGGTGAGGGTGTGAAAAAGGGGAGC-TCCT  98
      |  || ||||||| ||||||||||||||| || ||||||||  || ||||
seq2  TTGACCAGTATTG-AACTGTGGGTGAGGGGGTAAAAAAGGGAGGCTTCCT  99

seq1  T-CAGACTGCTGGTAAGAATATGAGTGAAGGCACACTTTAGAGAAATACT  147
      | ||||||||||   ||||||||||| ||||| ||| |||||||||||||
seq2  TCCAGACTGCTG--TAGAATATGAGT-AAGGC-CACCTTAGAGAAATACT  145

seq1  ATGAGGGCTCTGTTTCTTTTGTTGTTGTTCTGATTGTTGAAGCGGGGCCT  197
      |||| |||||||||||||||| |||   |||||||| |||||||||| ||
seq2  ATGA-GGCTCTGTTTCTTTTG-TGT--GTCTGATTG-TGAAGCGGGG-CT  189

seq1  TATGTCTCCTTGGTTTGCTTTGTAATTGAGGCTGCCCTTGAACTCCTGAT  247
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  TATGTCT-CTTGGTTTGCTTTGTAATTGAGGCTGCCCTTGAACT-CTGAT  237

seq1  TGTCTTGTTTCCATCTGTC-AAGTGCTAGGATCATGGCTGTTCATTATCA  296
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTC-TGTTTCCATCTGTCAAAGTGCTAGGATCATGGCTGTTCATTATCA  286

seq1  GACCTGGCTTCAGGGACTCTTCGCAAAATTATAAATAGTGCTTTTACAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGCTTCAGGGACTCTTCGCAAAATTATAAATAGTGCTTTTACAAG  336

seq1  AAACATTAAAAGAAAACTATGTAAAATGATTGATAGGTTATCTGGCATAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTAAAAGAAAACTATGTAAAATGATTGATAGGTTATCTGGCATAG  386

seq1  CTGCATTTAACTTCTTAAAGTACCTCACAACATAATGATGTAACTCTTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTAACTTCTTAAAGTACCTCACAACATAATGATGTAACTCTTAA  436

seq1  ATATATACAATGCTTTTAAAAATGAATTGCTTTGTCCAGAGCCTTCGGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACAATGCTTTTAAAAATGAATTGCTTTGTCCAGAGCCTTCGGGA  486

seq1  GATTTCCAAGTACATGAGTAATAGTCACACCTCCAACTAGGAGGAAGCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAAGTACATGAGTAATAGTCACACCTCCAACTAGGAGGAAGCAA  536

seq1  AGGCATAGCCTGTGTTGGGAACAAAGCATGCTTTGACATTTGGTTTCCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGCCTGTGTTGGGAACAAAGCATGCTTTGACATTTGGTTTCCTG  586

seq1  CAGTGGCTTAGTCTAACAGTATGAACATGAAGGATCCTCACAGTGGTACC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTTAGTCTAACAGTATGAACATGAAGGATCCTCACAGTGGTACC  636

seq1  ACTCATGGGATCTTTTCCATCAGCAATGATTTTAATTATGTTCCAATTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGGGATCTTTTCCATCAGCAATGATTTTAATTATGTTCCAATTAA  686

seq1  CCTTAATTAAGACAGTTTTTGTGTAACAGTGCATCTAAAGAGATCACTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTAAGACAGTTTTTGTGTAACAGTGCATCTAAAGAGATCACTAA  736

seq1  GCAAACAGCTTGATAAACACTGTCACTTAAATTCCTTTCTAAATATGACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGCTTGATAAACACTGTCACTTAAATTCCTTTCTAAATATGACA  786

seq1  CTCTTTTAATTAGGACATAAAGTTGCGAAGATGCTGTATTCACTGACATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAATTAGGACATAAAGTTGCGAAGATGCTGTATTCACTGACATT  836

seq1  ATTGGAGGTAATAGAGGCCTTGTTTCCAGTCACATTGTTTAAAGGCATGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGGTAATAGAGGCCTTGTTTCCAGTCACATTGTTTAAAGGCATGG  886

seq1  GTTGCAACAGGACCTAATGGTGTGGCATGGCTTAGCTGGAGATCACCTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAACAGGACCTAATGGTGTGGCATGGCTTAGCTGGAGATCACCTTC  936

seq1  CTGTGCAGGATCAGAGAAGACTAGGCCCCATCCATCAACTAGAAACTCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGGATCAGAGAAGACTAGGCCCCATCCATCAACTAGAAACTCAC  986

seq1  TCCAGGTGGGCAGTAAGATAGTATCCAATTACTGAAGTTAGTTTTACTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGGGCAGTAAGATAGTATCCAATTACTGAAGTTAGTTTTACTTT  1036

seq1  TCAGGGAAAGATTAAAAACTAAAAGACCTTTCAGGGAAATAATGAAAGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAAAGATTAAAAACTAAAAGACCTTTCAGGGAAATAATGAAAGAA  1086

seq1  GTCACAACTTATCTGTTTGGAAGAAGCTGAAGTCACCACATGCATTGTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAACTTATCTGTTTGGAAGAAGCTGAAGTCACCACATGCATTGTTA  1136

seq1  AAGTTAGCATAGAATTC  1163
      |||||||||||||||||
seq2  AAGTTAGCATAGAATTC  1153