BAC Information

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BAC

Clone NameB6Ng01-132L20
Chromosome2 (Build37)
Map Location 161,770,270 - 161,927,803
singlet/doubletdoublet
Overlap genePtprt
Upstream geneChd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132L20.bB6Ng01-132L20.g
ACCDH933465DH933466
length1,1551,169
definitionDH933465|Mus musculus domesticus DNA, BAC clone: B6Ng01-132L20, 5' end.DH933466|Mus musculus domesticus DNA, BAC clone: B6Ng01-132L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,926,642 - 161,927,803)(161,770,270 - 161,771,472)
sequence
gaattctccagcaagctactttgggcttgttctcacagtaggagcagggg
tccaagacagcaaggaaaagttcatacttctcttcctatctttcacttgt
ctgaagttttctgtttttacgttgtccaaaacaagtcatgtgatcatgcc
cagtgtcaaagtgggaggatggcacctggttatggaacaaaacagcagcg
ctacaaacaagcaactaaacgtggctataaatgtaatcggcagcactctg
gtctttctaataaacttcccaagggagggctagtcttggcaatgctcatt
tcaataattcatctctctcactagctaattgggctttttctcattgggag
ttactgatattaaaggacataacactattaccatccactaggctctttgt
tgatgccaattatttaatatttctagcttgagaggctgtggagagtatca
gtaaggtaatttgcataaatccttttgtttaactcagagcagacaagtta
tattaactctataaatgtgacattatttctgtggctgttctattgactga
tttatttgtttgttttatcgatactgtgtattaaacccagggccttctct
gtaaaagacaggtaatgtaccagtggactcttccctcagcccttactttt
tattttgagacagtgtcttgctaaattgcccaagcctgattagaactaat
tctgtgatccagccaagctggaacttatgaatttcctgtctcagcctccc
aagtggctgcgatgacatgcctgtgtcaccacacccagcttgatttgtgg
tttatttcctttgttttgatcatcctggggatgagtgtatgttatcttac
tctcaatgttggcatttccatcccatcttagcagatgaatctgacttagg
atgttaacagctctcccagtgtcacatagctagtgaggggggagaacctt
tcttaaattaaaatctgggatagtctttttatggagtgtgatgtgaaaga
gagaacacaggcacggtagaaagtttgagccaaaccttagtcatctcatt
tcggtcgaagaattaagttctgctggcagatcttaagagatgcagaatgc
cctctgagtgcagacactttaaggcactctagtcactcttgctctccgaa
ctgac
gaattcattttgtaagtttcttacatatccttgaattgtgcatactgggc
tcagcttggtttgaggctttgaactgttttcagttttgctctattcatgc
tggatcctgggctgaaggaatagcataccccaggccctgttctttctttg
attgatttgccagaattaagtcaacctgtgcacaggtttctaaagcttct
tcatgcctgtgaatactgactgtagcaggcaaggcacatcacgtgggcaa
acccaacaggagtcggctgttatccagacaggatgtaatgacaaagcagt
atgagtcaacatttgctgaatgatcgctcagaccacccagatcaatacat
gtctatgctgcaattacagggctaggaagcacaccatacagtccaggatt
ggaaggacagtctggttttgcatcaggtgtctgaaagttcagaagtttct
gctgcaatcaggagatgcaagacagtggcatctcgtgcctatgtggacta
gggtgttatgcttctctgggacagagagacacagcttgggaagttattct
tgccttctgaatgccaaactgaactagttgagccaacagacaaactggcc
aggtgagtcactaatgcccccaccactcaagtgcctgtgcagaccacata
cactcacagatactaatatcctttgccttgatgccaagtctcctgtgatc
agaagtaaatagtactttttgtgtcatctggaacctgctaccttccatgg
tgaaaaaaatatgtgattaggtagagcaatttgaagtggaaggttacccc
ggaacaggtagttggtctcattacttcaaaaggtccttaaaaatcagaaa
agagtcgagaagagaggaactgccttgctactggcattgagacagaaagc
agcaccagaaaccataggcagcctccttgaaaaaaggcaggaaactgatt
ctcactaaagtcagcaaaggaatagctctaggactattttgatttctgac
cataaaatagacgtattgtgtagtactactttatacttcaaagagccgta
cattccacccgttctgtctattcttttactttagctttctcacctcgtgc
cttttcttctacgaatgccatttccatttgttctctcattggaatgaatt
ggacatgcatgcaatggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_161926642_161927803
seq2: B6Ng01-132L20.b_48_1202 (reverse)

seq1  GTCAGTCTGGGAGA-CAAGAGTGTGCTGAGTGGC-TAAAGTGTCTGCCAC  48
      |||||| | ||||| ||||||||    ||||| | ||||||||||| |||
seq2  GTCAGT-TCGGAGAGCAAGAGTGACTAGAGTGCCTTAAAGTGTCTG-CAC  48

seq1  TCAGAAGAGCA-TCTGCATACTCTGTAAGATCCTGCCCAGCAGAACTAAA  97
      |||| || ||| ||||||| |||| |||||| ||| |||||||||||  |
seq2  TCAG-AGGGCATTCTGCAT-CTCT-TAAGAT-CTG-CCAGCAGAACT-TA  92

seq1  ATCCTTCGACCCAAAATGAGATGACCTTAGGTTTGGCTCAAACTTTCTAC  147
      || |||||| || ||||||||||| || ||||||||||||||||||||||
seq2  ATTCTTCGA-CCGAAATGAGATGA-CTAAGGTTTGGCTCAAACTTTCTAC  140

seq1  CGTTGCCTGTGTTCTCTCTTTCACATCACACTCCATAAAAAGACTATTCC  197
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CG-TGCCTGTGTTCTCTCTTTCACATCACACTCCATAAAAAGACTATCCC  189

seq1  AGATTTTAATTTAAGAAAGG-TCTCCCCCCTCACTAGCTATGTGACACTG  246
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGATTTTAATTTAAGAAAGGTTCTCCCCCCTCACTAGCTATGTGACACTG  239

seq1  GGAGAGCTGTTAACATCCTAAGTCAGATTCATCTGCTAAGATGGGATGGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCTGTTAACATCCTAAGTCAGATTCATCTGCTAAGATGGGATGGA  289

seq1  AATGCCAACATTGAGAGTAAGATAACATACACTCATCCCCAGGATGATCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAACATTGAGAGTAAGATAACATACACTCATCCCCAGGATGATCA  339

seq1  AAACAAAGGAAATAAACCACAAATCAAGCTGGGTGTGGTGACACAGGCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGGAAATAAACCACAAATCAAGCTGGGTGTGGTGACACAGGCAT  389

seq1  GTCATCGCAGCCACTTGGGAGGCTGAGACAGGAAATTCATAAGTTCCAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCGCAGCCACTTGGGAGGCTGAGACAGGAAATTCATAAGTTCCAGC  439

seq1  TTGGCTGGATCACAGAATTAGTTCTAATCAGGCTTGGGCAATTTAGCAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGATCACAGAATTAGTTCTAATCAGGCTTGGGCAATTTAGCAAG  489

seq1  ACACTGTCTCAAAATAAAAAGTAAGGGCTGAGGGAAGAGTCCACTGGTAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCTCAAAATAAAAAGTAAGGGCTGAGGGAAGAGTCCACTGGTAC  539

seq1  ATTACCTGTCTTTTACAGAGAAGGCCCTGGGTTTAATACACAGTATCGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGTCTTTTACAGAGAAGGCCCTGGGTTTAATACACAGTATCGAT  589

seq1  AAAACAAACAAATAAATCAGTCAATAGAACAGCCACAGAAATAATGTCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAATAAATCAGTCAATAGAACAGCCACAGAAATAATGTCAC  639

seq1  ATTTATAGAGTTAATATAACTTGTCTGCTCTGAGTTAAACAAAAGGATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGAGTTAATATAACTTGTCTGCTCTGAGTTAAACAAAAGGATTT  689

seq1  ATGCAAATTACCTTACTGATACTCTCCACAGCCTCTCAAGCTAGAAATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATTACCTTACTGATACTCTCCACAGCCTCTCAAGCTAGAAATAT  739

seq1  TAAATAATTGGCATCAACAAAGAGCCTAGTGGATGGTAATAGTGTTATGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTGGCATCAACAAAGAGCCTAGTGGATGGTAATAGTGTTATGT  789

seq1  CCTTTAATATCAGTAACTCCCAATGAGAAAAAGCCCAATTAGCTAGTGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATATCAGTAACTCCCAATGAGAAAAAGCCCAATTAGCTAGTGAG  839

seq1  AGAGATGAATTATTGAAATGAGCATTGCCAAGACTAGCCCTCCCTTGGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGAATTATTGAAATGAGCATTGCCAAGACTAGCCCTCCCTTGGGA  889

seq1  AGTTTATTAGAAAGACCAGAGTGCTGCCGATTACATTTATAGCCACGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTAGAAAGACCAGAGTGCTGCCGATTACATTTATAGCCACGTTT  939

seq1  AGTTGCTTGTTTGTAGCGCTGCTGTTTTGTTCCATAACCAGGTGCCATCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTGTTTGTAGCGCTGCTGTTTTGTTCCATAACCAGGTGCCATCC  989

seq1  TCCCACTTTGACACTGGGCATGATCACATGACTTGTTTTGGACAACGTAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTTGACACTGGGCATGATCACATGACTTGTTTTGGACAACGTAA  1039

seq1  AAACAGAAAACTTCAGACAAGTGAAAGATAGGAAGAGAAGTATGAACTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAACTTCAGACAAGTGAAAGATAGGAAGAGAAGTATGAACTTT  1089

seq1  TCCTTGCTGTCTTGGACCCCTGCTCCTACTGTGAGAACAAGCCCAAAGTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTGTCTTGGACCCCTGCTCCTACTGTGAGAACAAGCCCAAAGTA  1139

seq1  GCTTGCTGGAGAATTC  1162
      ||||||||||||||||
seq2  GCTTGCTGGAGAATTC  1155

seq1: chr2_161770270_161771472
seq2: B6Ng01-132L20.g_67_1235

seq1  GAATTCATTTTGTAAGTTTCTTACATATCCTTGAATTGTGCATACTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTAAGTTTCTTACATATCCTTGAATTGTGCATACTGGGC  50

seq1  TCAGCTTGGTTTGAGGCTTTGAACTGTTTTCAGTTTTGCTCTATTCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTGGTTTGAGGCTTTGAACTGTTTTCAGTTTTGCTCTATTCATGC  100

seq1  TGGATCCTGGGCTGAAGGAATAGCATACCCCAGGCCCTGTTCTTTCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTGGGCTGAAGGAATAGCATACCCCAGGCCCTGTTCTTTCTTTG  150

seq1  ATTGATTTGCCAGAATTAAGTCAACCTGTGCACAGGTTTCTAAAGCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTGCCAGAATTAAGTCAACCTGTGCACAGGTTTCTAAAGCTTCT  200

seq1  TCATGCCTGTGAATACTGACTGTAGCAGGCAAGGCACATCACGTGGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCTGTGAATACTGACTGTAGCAGGCAAGGCACATCACGTGGGCAA  250

seq1  ACCCAACAGGAGTCGGCTGTTATCCAGACAGGATGTAATGACAAAGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACAGGAGTCGGCTGTTATCCAGACAGGATGTAATGACAAAGCAGT  300

seq1  ATGAGTCAACATTTGCTGAATGATCGCTCAGACCACCCAGATCAATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCAACATTTGCTGAATGATCGCTCAGACCACCCAGATCAATACAT  350

seq1  GTCTATGCTGCAATTACAGGGCTAGGAAGCACACCATACAGTCCAGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGCTGCAATTACAGGGCTAGGAAGCACACCATACAGTCCAGGATT  400

seq1  GGAAGGACAGTCTGGTTTTGCATCAGGTGTCTGAAAGTTCAGAAGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACAGTCTGGTTTTGCATCAGGTGTCTGAAAGTTCAGAAGTTTCT  450

seq1  GCTGCAATCAGGAGATGCAAGACAGTGGCATCTCGTGCCTATGTGGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAATCAGGAGATGCAAGACAGTGGCATCTCGTGCCTATGTGGACTA  500

seq1  GGGTGTTATGCTTCTCTGGGACAGAGAGACACAGCTTGGGAAGTTATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTATGCTTCTCTGGGACAGAGAGACACAGCTTGGGAAGTTATTCT  550

seq1  TGCCTTCTGAATGCCAAACTGAACTAGTTGAGCCAACAGACAAACTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTGAATGCCAAACTGAACTAGTTGAGCCAACAGACAAACTGGCC  600

seq1  AGGTGAGTCACTAATGCCCCCACCACTCAAGTGCCTGTGCAGACCACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGTCACTAATGCCCCCACCACTCAAGTGCCTGTGCAGACCACATA  650

seq1  CACTCACAGATACTAATATCCTTTGCCTTGATGCCAAGTCTCCTGTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACAGATACTAATATCCTTTGCCTTGATGCCAAGTCTCCTGTGATC  700

seq1  AGAAGTAAATAGTACTTTTTGTGTCATCTGGAACCTGCTACCTTCCATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAATAGTACTTTTTGTGTCATCTGGAACCTGCTACCTTCCATGG  750

seq1  TGAAAAAAATATGTGATTAGGTAGAGCAATTTGAAGTGGAAGGTTACCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAATATGTGATTAGGTAGAGCAATTTGAAGTGGAAGGTTACCCC  800

seq1  GGAACAGGTAGTTGGTCTCATTACTTCAAAAGGTCCTTAAAAATCAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGTAGTTGGTCTCATTACTTCAAAAGGTCCTTAAAAATCAGAAA  850

seq1  AGAGTCGAGAAGAGAGGAACTGCCTTGCTACTGGCATTGAAGACAGAAAG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAGTCGAGAAGAGAGGAACTGCCTTGCTACTGGCATTG-AGACAGAAAG  899

seq1  CAGCACCAAGAAAACCATAGGCAGCCTCCTTGAAAAAAAGGCAAGGAAAC  950
      ||||||||   ||||||||||||||||||||| ||||||||| |||||||
seq2  CAGCACCA--GAAACCATAGGCAGCCTCCTTG-AAAAAAGGC-AGGAAAC  945

seq1  TGATTCTCACCTAAAGTCAGCAAAAGGAATAGCCCCAAGGAACTATTTTG  1000
      ||||||||| ||||||||||| ||||||||||| | |  | |||||||||
seq2  TGATTCTCA-CTAAAGTCAGC-AAAGGAATAGCTCTA--GGACTATTTTG  991

seq1  AATTTCTGACCATAAAAATAGACGTA-TGTGTAGTAACTACTTATAACTT  1049
       |||||||||||| |||||||||||| |||||||| |||||||   ||||
seq2  -ATTTCTGACCAT-AAAATAGACGTATTGTGTAGT-ACTACTTTATACTT  1038

seq1  CAACAGAGCCCGTACAATCCCCAAACACCGTTCTGTCTATTTCTGTACCT  1099
      ||| |||| ||||||| ||| |     |||||||||||| |||| |  ||
seq2  CAA-AGAG-CCGTACATTCCAC-----CCGTTCTGTCTA-TTCTTTTACT  1080

seq1  TTAGCTCTATCTCCACCTCCGTTGCTTTTCCTCTACAGAAATGGCATTTC  1149
      |||||| | |   ||||| |||  |||||| |||||   |||| ||||||
seq2  TTAGCTTTCT---CACCT-CGTGCCTTTTCTTCTAC--GAATGCCATTTC  1124

seq1  CACATATGTTCTCTCATTTGAATGAATTTTTAGGAAGCAATGCATGCAAT  1199
        ||| |||||||||||| |||||||||    |||    |||||||||||
seq2  --CATTTGTTCTCTCATTGGAATGAATT----GGA---CATGCATGCAAT  1165

seq1  GGAT  1203
      ||||
seq2  GGAT  1169