BAC Information

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BAC

Clone NameB6Ng01-132O12
Chromosome2 (Build37)
Map Location 18,036,085 - 18,141,800
singlet/doubletdoublet
Overlap geneMllt10, LOC641254, Dnajc1
Upstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik
Downstream geneLOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132O12.bB6Ng01-132O12.g
ACCDH933593DH933594
length1,0271,081
definitionDH933593|Mus musculus domesticus DNA, BAC clone: B6Ng01-132O12, 5' end.DH933594|Mus musculus domesticus DNA, BAC clone: B6Ng01-132O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,036,085 - 18,037,041)(18,140,706 - 18,141,800)
sequence
gaattcatcaattcagtgactttatcaattgtaaattcatcttctgtatg
tgagatctttgttgcttatttcattgtaacttccctcaggtcccacttgc
ttcttgtcctccatggcagtcccttctccccctcttcaggatgtggcagc
ctcactctgccacagctgatttcccttctgtggtttgcctttgttctcac
ctttatccccccattcttaggggaacaatacctaggcacattgtgacact
tgtgttggactgtccctgactccctagtatggagactttccttgcttggt
ccttcatggttttaagaataaaatatttgaagaggcaggttgaaagggtg
gaaggaaaaatgaattactgagttttaaattttcaatctcctctaaatta
attttacaatgtgacaaaatatgtgttctttttctctctgagttgattag
taagttatttttctttggagacagtttgtatgtgtagcccaggctagctc
caaacacagatccacctgcctctgccccacaagtgctaggactaagggca
tgtgcttaccactgctttcctttatttttttatatatttttagtttgaga
atttcatatttatctatgtattttggttatgtatacccccatattctttc
tctagctcacaacacccatcccctctccccccatatctcactcctagctt
cttgtcatcttttttataaagaaaagaaactcaagttcaaaattaatact
actcagatgcaaatgagtgtgatgccatttcttggagcgtggtcaagcta
ctgggaaccacattcacaaagaagaccctcctgcccctagcagccaccaa
tgccgatagctgctcagctaaaggctgtatgcatggaatggtgacaagtt
tgtcttagacagcctttaggtaggcttcacagctgccgtgagtttgtgag
tgcaacagcccttcatgtcccgaagacactgctttgcagcagtgctcaca
gacttctgagtctcacatctatcagcc
gaattccttggcttgtccagtaagtgttaggtttccttcctaaaggaccc
ctgctctttgatcgaagtctggccatgtatacccagtattcctcagagca
gtggcaaggacaaagctccaacccccatgtctagcgcgttcagagaatgc
cttcccttgtgggtaagactggggtgttcctagtgaagaaggtaaagtag
acagtgcatgtcagatgcccagcacactgtccaggttcaccatgcccttt
ctcgtgtactgtgtcctttcctaggaatgaccaggctctctgaacttaag
tcaaatggtcagaattccaggccaatcaagatagccacagccttgccaga
tgacatcatcacgcagcgggaggactcagcaggggccatggaggatgagg
agcacgaggctgctgagggtgagcaggagtcagcgaccacagaagcccga
cctcggaggcggaagtcagccagggcggctgaggctgtaaccagagtgga
gccagaggagaagctgagaggaaagaggcaaaaagactttgatatatcag
aacaaaacgattccagtgacgaagagaaacaacgaaaagaaagaactcgt
gctgcagaggaggcgtggactcagagtcagcagaaacttctggaattggc
attacagcaataccctaaaggagcttctgaccgctgggacaaaatagcca
aatgtgtcccgtctaagagtaaggtatgtaacactgcaggggagtgggtg
gacccatgcttccttccccggcttacagccctttcttccatgccccactg
gctacaggaccttgtgtttcacagttgtcttcgtctctcctcagctcgtg
aatctgcacacttgccaaggtagagatgaggtcaggatgctaagaatagc
cattatgcagaatagcttcgctcttctcgagaaaatgagagctatgaaac
agactcagtcagtgggcaggtgctggccttcaacttgctgacggctcatc
tctgcaatcacatggtggaaagaagaacactccctcaatttcccaggatg
tgtctggcacacgggtaacatgcattcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_18036085_18037041
seq2: B6Ng01-132O12.b_47_1003

seq1  GAATTCATCAATTCAGTGACTTTATCAATTGTAAATTCATCTTCTGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAATTCAGTGACTTTATCAATTGTAAATTCATCTTCTGTATG  50

seq1  TGAGATCTTTGTTGCTTATTTCATTGTAACTTCCCTCAGGTCCCACTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTTTGTTGCTTATTTCATTGTAACTTCCCTCAGGTCCCACTTGC  100

seq1  TTCTTGTCCTCCATGGCAGTCCCTTCTCCCCCTCTTCAGGATGTGGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCCTCCATGGCAGTCCCTTCTCCCCCTCTTCAGGATGTGGCAGC  150

seq1  CTCACTCTGCCACAGCTGATTTCCCTTCTGTGGTTTGCCTTTGTTCTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGCCACAGCTGATTTCCCTTCTGTGGTTTGCCTTTGTTCTCAC  200

seq1  CTTTATCCCCCCATTCTTAGGGGAACAATACCTAGGCACATTGTGACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCCCCCATTCTTAGGGGAACAATACCTAGGCACATTGTGACACT  250

seq1  TGTGTTGGACTGTCCCTGACTCCCTAGTATGGAGACTTTCCTTGCTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGACTGTCCCTGACTCCCTAGTATGGAGACTTTCCTTGCTTGGT  300

seq1  CCTTCATGGTTTTAAGAATAAAATATTTGAAGAGGCAGGTTGAAAGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGGTTTTAAGAATAAAATATTTGAAGAGGCAGGTTGAAAGGGTG  350

seq1  GAAGGAAAAATGAATTACTGAGTTTTAAATTTTCAATCTCCTCTAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAATGAATTACTGAGTTTTAAATTTTCAATCTCCTCTAAATTA  400

seq1  ATTTTACAATGTGACAAAATATGTGTTCTTTTTCTCTCTGAGTTGATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAATGTGACAAAATATGTGTTCTTTTTCTCTCTGAGTTGATTAG  450

seq1  TAAGTTATTTTTCTTTGGAGACAGTTTGTATGTGTAGCCCAGGCTAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATTTTTCTTTGGAGACAGTTTGTATGTGTAGCCCAGGCTAGCTC  500

seq1  CAAACACAGATCCACCTGCCTCTGCCCCACAAGTGCTAGGACTAAGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAGATCCACCTGCCTCTGCCCCACAAGTGCTAGGACTAAGGGCA  550

seq1  TGTGCTTACCACTGCTTTCCTTTATTTTTTTATATATTTTTAGTTTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTACCACTGCTTTCCTTTATTTTTTTATATATTTTTAGTTTGAGA  600

seq1  ATTTCATATTTATCTATGTATTTTGGTTATGTATACCCCCATATTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATATTTATCTATGTATTTTGGTTATGTATACCCCCATATTCTTTC  650

seq1  TCTAGCTCACAACACCCATCCCCTCTCCCCCCATATCTCACTCCTAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCACAACACCCATCCCCTCTCCCCCCATATCTCACTCCTAGCTT  700

seq1  CTTGTCATCTTTTTTATAAAGAAAAGAAACTCAAGTTCAAAATTAATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCATCTTTTTTATAAAGAAAAGAAACTCAAGTTCAAAATTAATACT  750

seq1  ACTCAGATGCAAATGAGTGTGATGCCATTTCTTGGAGCGTGGTCAAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGATGCAAATGAGTGTGATGCCATTTCTTGGAGCGTGGTCAAGCTA  800

seq1  CTGGGAACCACATTCACAAAGAAGACCCTCCTGCCCCTAGCAGCCACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACCACATTCACAAAGAAGACCCTCCTGCCCCTAGCAGCCACCAA  850

seq1  TGCCGATAGCTGCTCAGCTAAGGGCTGTATGCATGGAATGGTGACAAGTT  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCCGATAGCTGCTCAGCTAAAGGCTGTATGCATGGAATGGTGACAAGTT  900

seq1  TGTCTTAGACAGCCTTTAGGTAGGCTTCACAGCTGCCGTGAGTTTGTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGACAGCCTTTAGGTAGGCTTCACAGCTGCCGTGAGTTTGTGAG  950

seq1  TGCAACA  957
      |||||||
seq2  TGCAACA  957

seq1: chr2_18140706_18141800
seq2: B6Ng01-132O12.g_70_1150 (reverse)

seq1  ACATGAATGCATGTTTACACGTGTGGCCAGACACATCCTGGGACAATTTG  50
      ||||||||||||| |||| ||||| |||||||||||||||||  || |||
seq2  ACATGAATGCATG-TTACCCGTGT-GCCAGACACATCCTGGG--AAATTG  46

seq1  AGGGAGTTGGTTCTTTCTTTCCACCATGTGAATTGCAGAGATTGAGCCGT  100
      |||||||  |||| |||||||||||||||| |||||||||| ||||||||
seq2  AGGGAGT--GTTC-TTCTTTCCACCATGTG-ATTGCAGAGA-TGAGCCGT  91

seq1  CAAGCAAGTTTGAAGGCCAGCACCCTTGCCCACTGACTGAGTTCTGTTTC  150
      | |||||| |||||||||||||||  ||||||||||||||| ||||||||
seq2  C-AGCAAG-TTGAAGGCCAGCACC--TGCCCACTGACTGAG-TCTGTTTC  136

seq1  ATAGCTCTCATTTTCTTCGAGAAGAGCG-AGCTATTCTGCATAATGGCTA  199
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  ATAGCTCTCATTTTC-TCGAGAAGAGCGAAGCTATTCTGCATAATGGCTA  185

seq1  TTCTTAGCATCCTGACCTCATCTCTACCTTGGCAAGTGTGCAGATTCACG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCATCCTGACCTCATCTCTACCTTGGCAAGTGTGCAGATTCACG  235

seq1  AGCTGAGGAGAGACGAAGACAACTGTGAAACACAAGGTCCTGTAGCCAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGAGAGACGAAGACAACTGTGAAACACAAGGTCCTGTAGCCAGT  285

seq1  GGGGCATGGAAGAAAGGGCTGTAAGCCGGGGAAGGAAGCATGGGTCCACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATGGAAGAAAGGGCTGTAAGCCGGGGAAGGAAGCATGGGTCCACC  335

seq1  CACTCCCCTGCAGTGTTACATACCTTACTCTTAGACGGGACACATTTGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCTGCAGTGTTACATACCTTACTCTTAGACGGGACACATTTGGC  385

seq1  TATTTTGTCCCAGCGGTCAGAAGCTCCTTTAGGGTATTGCTGTAATGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTCCCAGCGGTCAGAAGCTCCTTTAGGGTATTGCTGTAATGCCA  435

seq1  ATTCCAGAAGTTTCTGCTGACTCTGAGTCCACGCCTCCTCTGCAGCACGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGAAGTTTCTGCTGACTCTGAGTCCACGCCTCCTCTGCAGCACGA  485

seq1  GTTCTTTCTTTTCGTTGTTTCTCTTCGTCACTGGAATCGTTTTGTTCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCTTTTCGTTGTTTCTCTTCGTCACTGGAATCGTTTTGTTCTGA  535

seq1  TATATCAAAGTCTTTTTGCCTCTTTCCTCTCAGCTTCTCCTCTGGCTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAAGTCTTTTTGCCTCTTTCCTCTCAGCTTCTCCTCTGGCTCCA  585

seq1  CTCTGGTTACAGCCTCAGCCGCCCTGGCTGACTTCCGCCTCCGAGGTCGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTACAGCCTCAGCCGCCCTGGCTGACTTCCGCCTCCGAGGTCGG  635

seq1  GCTTCTGTGGTCGCTGACTCCTGCTCACCCTCAGCAGCCTCGTGCTCCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTGGTCGCTGACTCCTGCTCACCCTCAGCAGCCTCGTGCTCCTC  685

seq1  ATCCTCCATGGCCCCTGCTGAGTCCTCCCGCTGCGTGATGATGTCATCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCATGGCCCCTGCTGAGTCCTCCCGCTGCGTGATGATGTCATCTG  735

seq1  GCAAGGCTGTGGCTATCTTGATTGGCCTGGAATTCTGACCATTTGACTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCTGTGGCTATCTTGATTGGCCTGGAATTCTGACCATTTGACTTA  785

seq1  AGTTCAGAGAGCCTGGTCATTCCTAGGAAAGGACACAGTACACGAGAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAGAGCCTGGTCATTCCTAGGAAAGGACACAGTACACGAGAAAG  835

seq1  GGCATGGTGAACCTGGACAGTGTGCTGGGCATCTGACATGCACTGTCTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTGAACCTGGACAGTGTGCTGGGCATCTGACATGCACTGTCTAC  885

seq1  TTTACCTTCTTCACTAGGAACACCCCAGTCTTACCCACAAGGGAAGGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTCTTCACTAGGAACACCCCAGTCTTACCCACAAGGGAAGGCAT  935

seq1  TCTCTGAACGCGCTAGACATGGGGGTTGGAGCTTTGTCCTTGCCACTGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAACGCGCTAGACATGGGGGTTGGAGCTTTGTCCTTGCCACTGCT  985

seq1  CTGAGGAATACTGGGTATACATGGCCAGACTTCGATCAAAGAGCAGGGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAATACTGGGTATACATGGCCAGACTTCGATCAAAGAGCAGGGGT  1035

seq1  CCTTTAGGAAGGAAACCTAACACTTACTGGACAAGCCAAGGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGGAAGGAAACCTAACACTTACTGGACAAGCCAAGGAATTC  1081