BAC Information

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BAC

Clone NameB6Ng01-133A15
Chromosome2 (Build37)
Map Location 106,576,186 - 106,692,420
singlet/doubletdoublet
Overlap geneC130023O10Rik
Upstream geneElp4, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
Downstream geneLOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133A15.bB6Ng01-133A15.g
ACCDH933695DH933696
length1,0531,041
definitionDH933695|Mus musculus domesticus DNA, BAC clone: B6Ng01-133A15, 5' end.DH933696|Mus musculus domesticus DNA, BAC clone: B6Ng01-133A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,691,287 - 106,692,420)(106,576,186 - 106,577,233)
sequence
gaattccagttaccttctttgtgtagtgcacacccagtggcttggaagcc
cagtgaagatggcttggtgaacccccagggcatccactgatccactgggt
cggtaccttttggtttggatgtctgttgtgagctatgttctagcaagcta
ggtgatagacaaagggaattcaaaacagctttcctgaagaacaacagcca
gttatttcatacataaaggtgatgttggaagaattctctgaactctggct
gtcctttctaggtaatctaaattcagagagcctccaggaaagtccgaatg
acctgaaaaaaataagctagtggtttctaaaatggataggttcccaaatg
agaagtgacccagggactgtttggtgggactgcagggaagtcacttttcc
cttcaaatactcctaacatgcaggtggatgtagcatcaggaaacacaaag
ccatctcccagaagagaccaagccaggaggcaccgtgagttccatgcctg
gctggtgctaaggatcagaatgagcaggacagagaaaagagttgggaaga
ctgccaaggacttgagcacagggcagagaacacctgcgctcccccgtccc
caccacccccgccctgcttacctgcagacattcgagagccaagcaagcag
agcctactttactcacgttttaaagagtaagagggcgagagcggtgagct
cagggtcagctggattgtgtcttgttacagagcaaaccctcagagattga
ttgtaatgaatacagaagaccaatgaagtctctgctccaaacagacgagc
tcatcgtacagtagaggagagagcaatgaagaacagtaccacgagggtag
tagagggagggtggtaccagagaggagagtataatggatgctgcaataga
gaatggaccaatagagggctgtatgatacaggatagtgtgatagcatgtt
gtaggtagaggttggcctcacagagaggatgtgatggaggactattgcag
tagggctggtatcgtagaagaacatagggtggtatagtagaggttggtta
tgt
gaattcacatcatgcgcagcgctctccgatttaaattgttgccacttaat
attcactgaacgtcggccctgcacttttgtcctcagaaaaaaacagaggc
ggcatgagctcgtgcagtgggctttgttcgctgtaattagttggtgatag
aacagtgtggatacagcggttcagcagggccagggaagcagtgccctagg
tgcaaacggggctctggcctgcgcactccttcagctccgtgacagttctg
gagtgtggtggccaagccaggaaaaagagaacagcttcgttctggaagca
ccttggttagcttagacatcctctctgttggttccctgtgatacctcgca
ccctggttcctttgttcctctttggagccgaccctcctggaagctctgcc
tggagactgaagttgccattttattgttcttctccagagcctcactggtt
tctagctgtgttttggtggatctggactgcagttaacctttcagggaagc
agaaatgtgaagttgaaacaagaaagatgctttaagagaccttagcactt
gcccacagtcctagcactaggaggaggaaggagagtcgagaacctacact
aaccttgcttacatgactaggtcagcctggctacattcgaccctgtttga
gagagagacaaaggacagagaagggcagagggagggaggaagaagatgat
gctaagttgctttctggaaccctgtggctgttggtgctggcctgttctct
atatacaaaaaaggagaaagtgacatacccaagttcttgaaggagacatg
tagtaagagcacacatccctggactccatggtcagggctcatgctaaggc
ttatcagtggaattcattcctcttcaggaacctgcatttaaaaatcacaa
gtttgtgcttgtgacaaagtcttttaggatgaaggccactgctgggcgta
gtggcgacacctttatcccagcactcgggagcagagcaggtgatttctga
gttcgaggccagcctggtctacaagtgagttccaggacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_106691287_106692420
seq2: B6Ng01-133A15.b_48_1100 (reverse)

seq1  ACATAAATGTCGGATACATACACACTCTGAACTAAACCAAGCACAGTAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTGGTATTCTGTCCTCTACTGTGCCATCCTTTACCATACCAACCTCTACT  100
                                      ||   |||||||||||||
seq2  --------------------------------ACATAACCAACCTCTACT  18

seq1  ATACCACCCTATGTTC-TCTACGATACCAGCCCTACCTGC-ATAGTCCTC  148
      |||||||||||||||| |||||||||||||||||| |||| |||||||||
seq2  ATACCACCCTATGTTCTTCTACGATACCAGCCCTA-CTGCAATAGTCCTC  67

seq1  CATCACATTCTCTCTGTGAGGCCAACCTCTACCTACAACATGCTATCACA  198
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATCCTCTCTGTGAGGCCAACCTCTACCTACAACATGCTATCACA  117

seq1  CTATCCTGTATCATACAGCCCTCTATTGGTCCATTCTCTATTGCAGCATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTGTATCATACAGCCCTCTATTGGTCCATTCTCTATTGCAGCATC  167

seq1  CATTATACTCTCCTCTCTGGTACCACCCTCCCTCTACTACCCTCGTGGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATACTCTCCTCTCTGGTACCACCCTCCCTCTACTACCCTCGTGGTA  217

seq1  CTGTTCTTCATTGCTCTCTCCTCTACTGTACGATGAGCTCGTCTGTTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCATTGCTCTCTCCTCTACTGTACGATGAGCTCGTCTGTTTGG  267

seq1  AGCAGAGACTTCATTGGTCTTCTGTATTCATTACAATCAATCTCTGAGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGACTTCATTGGTCTTCTGTATTCATTACAATCAATCTCTGAGGG  317

seq1  TTTGCTCTGTAACAAGACACAATCCAGCTGACCCTGAGCTCACCGCTCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTGTAACAAGACACAATCCAGCTGACCCTGAGCTCACCGCTCTC  367

seq1  GCCCTCTTACTCTTTAAAACGTGAGTAAAGTAGGCTCTGCTTGCTTGGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTACTCTTTAAAACGTGAGTAAAGTAGGCTCTGCTTGCTTGGCT  417

seq1  CTCGAATGTCTGCAGGTAAGCAGGGCGGGGGTGGTGGGGACGGGGGAGCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAATGTCTGCAGGTAAGCAGGGCGGGGGTGGTGGGGACGGGGGAGCG  467

seq1  CAGGTGTTCTCTGCCCTGTGCTCAAGTCCTTGGCAGTCTTCCCAACTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTTCTCTGCCCTGTGCTCAAGTCCTTGGCAGTCTTCCCAACTCTT  517

seq1  TTCTCTGTCCTGCTCATTCTGATCCTTAGCACCAGCCAGGCATGGAACTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTCCTGCTCATTCTGATCCTTAGCACCAGCCAGGCATGGAACTC  567

seq1  ACGGTGCCTCCTGGCTTGGTCTCTTCTGGGAGATGGCTTTGTGTTTCCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGCCTCCTGGCTTGGTCTCTTCTGGGAGATGGCTTTGTGTTTCCTG  617

seq1  ATGCTACATCCACCTGCATGTTAGGAGTATTTGAAGGGAAAAGTGACTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACATCCACCTGCATGTTAGGAGTATTTGAAGGGAAAAGTGACTTC  667

seq1  CCTGCAGTCCCACCAAACAGTCCCTGGGTCACTTCTCATTTGGGAACCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGTCCCACCAAACAGTCCCTGGGTCACTTCTCATTTGGGAACCTA  717

seq1  TCCATTTTAGAAACCACTAGCTTATTTTTTTCAGGTCATTCGGACTTTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTAGAAACCACTAGCTTATTTTTTTCAGGTCATTCGGACTTTCC  767

seq1  TGGAGGCTCTCTGAATTTAGATTACCTAGAAAGGACAGCCAGAGTTCAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTCTCTGAATTTAGATTACCTAGAAAGGACAGCCAGAGTTCAGA  817

seq1  GAATTCTTCCAACATCACCTTTATGTATGAAATAACTGGCTGTTGTTCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAACATCACCTTTATGTATGAAATAACTGGCTGTTGTTCTT  867

seq1  CAGGAAAGCTGTTTTGAATTCCCTTTGTCTATCACCTAGCTTGCTAGAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGCTGTTTTGAATTCCCTTTGTCTATCACCTAGCTTGCTAGAAC  917

seq1  ATAGCTCACAACAGACATCCAAACCAAAAGGTACCGACCCAGTGGATCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCACAACAGACATCCAAACCAAAAGGTACCGACCCAGTGGATCAG  967

seq1  TGGATGCCCTGGGGGTTCACCAAGCCATCTTCACTGGGCTTCCAAGCCAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCCCTGGGGGTTCACCAAGCCATCTTCACTGGGCTTCCAAGCCAC  1017

seq1  TGGGTGTGCACTACACAAAGAAGGTAACTGGAATTC  1134
      ||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGCACTACACAAAGAAGGTAACTGGAATTC  1053

seq1: chr2_106576186_106577233
seq2: B6Ng01-133A15.g_67_1107

seq1  GAATTCACATCATGCGCAGCGCTCTCCGATTTAAATTGTTGCCACTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCATGCGCAGCGCTCTCCGATTTAAATTGTTGCCACTTAAT  50

seq1  ATTCACTGAACGTCGGCCCTGCACTTTTGTCCTCAGAAAAAAACAGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGAACGTCGGCCCTGCACTTTTGTCCTCAGAAAAAAACAGAGGC  100

seq1  GGCATGAGCTCGTGCAGTGGGCTTTGTTCGCTGTAATTAGTTGGTGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGCTCGTGCAGTGGGCTTTGTTCGCTGTAATTAGTTGGTGATAG  150

seq1  AACAGTGTGGATACAGCGGTTCAGCAGGGCCAGGGAAGCAGTGCCCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTGGATACAGCGGTTCAGCAGGGCCAGGGAAGCAGTGCCCTAGG  200

seq1  TGCAAACGGGGCTCTGGCCTGCGCACTCCTTCAGCTCCGTGACAGTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACGGGGCTCTGGCCTGCGCACTCCTTCAGCTCCGTGACAGTTCTG  250

seq1  GAGTGTGGTGGCCAAGCCAGGAAAAAGAGAACAGCTTCGTTCTGGAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGTGGCCAAGCCAGGAAAAAGAGAACAGCTTCGTTCTGGAAGCA  300

seq1  CCTTGGTTAGCTTAGACATCCTCTCTGTTGGTTCCCTGTGATACCTCGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTAGCTTAGACATCCTCTCTGTTGGTTCCCTGTGATACCTCGCA  350

seq1  CCCTGGTTCCTTTGTTCCTCTTTGGAGCCGACCCTCCTGGAAGCTCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTCCTTTGTTCCTCTTTGGAGCCGACCCTCCTGGAAGCTCTGCC  400

seq1  TGGAGACTGAAGTTGCCATTTTATTGTTCTTCTCCAGAGCCTCACTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTGAAGTTGCCATTTTATTGTTCTTCTCCAGAGCCTCACTGGTT  450

seq1  TCTAGCTGTGTTTTGGTGGATCTGGACTGCAGTTAACCTTTCAGGGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGTGTTTTGGTGGATCTGGACTGCAGTTAACCTTTCAGGGAAGC  500

seq1  AGAAATGTGAAGTTGAAACAAGAAAGATGCTTTAAGAGACCTTAGCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTGAAGTTGAAACAAGAAAGATGCTTTAAGAGACCTTAGCACTT  550

seq1  GCCCACAGTCCTAGCACTAGGAGGAGGAAGGAGAGTCGAGAACCTACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGTCCTAGCACTAGGAGGAGGAAGGAGAGTCGAGAACCTACACT  600

seq1  AACCTTGCTTACATGACTAGGTCAGCCTGGCTACATTCGACCCTGTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGCTTACATGACTAGGTCAGCCTGGCTACATTCGACCCTGTTTGA  650

seq1  GAGAGAGACAAAGGACAGAGAAGGGCAGAGGGAGGGAGGAAGAAGATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACAAAGGACAGAGAAGGGCAGAGGGAGGGAGGAAGAAGATGAT  700

seq1  GCTAAGTTGCTTTCTGGAACCCTGTGGCTGTTGGTGCTGGCCTGTTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTTGCTTTCTGGAACCCTGTGGCTGTTGGTGCTGGCCTGTTCTCT  750

seq1  ATATACAAAAAAGGAGAAGGTGACATACCCAAGTTCTTGAAGGAGACATG  800
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATATACAAAAAAGGAGAAAGTGACATACCCAAGTTCTTGAAGGAGACATG  800

seq1  TAGTAAGAGCACACATCCCTGGACTCCATGGTCAGGGCTCATGCTAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGAGCACACATCCCTGGACTCCATGGTCAGGGCTCATGCTAAGGC  850

seq1  TTATCAGTGGAATTCATTCCTCTTCAGGAACCTGCATTTAAAAATCACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTGGAATTCATTCCTCTTCAGGAACCTGCATTTAAAAATCACAA  900

seq1  GTTTGTGCTTGTGACAAAGTCTTTTAAGAATGAAGGCCACTGCTGGGCGT  950
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  GTTTGTGCTTGTGACAAAGTCTTTT-AGGATGAAGGCCACTGCTGGGCGT  949

seq1  AGTGGCGAACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGAT  1000
      ||||||| |||||||| |||||||||||||||| ||||| |||||| |||
seq2  AGTGGCG-ACACCTTT-ATCCCAGCACTCGGGA-GCAGA-GCAGGT-GAT  994

seq1  TTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGC  1048
      |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTGAGTTCGAGGCCAGCCTGGTCTAC-AAGTGAGTTCCAGGACAGC  1041