BAC Information

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BAC

Clone NameB6Ng01-133C09
Chromosome2 (Build37)
Map Location 174,317,510 - 174,407,271
singlet/doubletdoublet
Overlap genenone
Upstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2
Downstream geneLOC664967, LOC100043757, Edn3, LOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133C09.bB6Ng01-133C09.g
ACCDH933774DH933775
length1,0891,172
definitionDH933774|Mus musculus domesticus DNA, BAC clone: B6Ng01-133C09, 5' end.DH933775|Mus musculus domesticus DNA, BAC clone: B6Ng01-133C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,406,707 - 174,407,271)(174,317,510 - 174,318,718)
sequence
tgaccattgtactagtcagggttctctagagtcacagaacttatggaatg
tctctctatactgtgggaatttattgtgatgacttacagtctgtggtcca
actcccccaacaatggtcagctgtgaatgggaagtccaagaatctagtcg
ttgctcaggcccacaaggctagttgtttcagctggtcttctgtagaagta
ggttccaacagatgtgctggcaagtaagtgcaaacaggcaaagaaaaacg
aatcttccttcttccaatgtccttatgtaggtctccagcagagggtgtgg
cccatactaaagatttgtacaaccatgcctggatctgggacttgctttgt
cccaagctgaccttgaactcagagatcttcttgccttagttcctgggatt
aaagctgtatactaccttgcctgggcctaagcttttcatagccactatgc
ctcaagatcttcatgccaagatccaggtcggaaatttgtgtcttccagcc
tcaagatttggaccacaggtgagccctccaattctggactgtagttcatt
ccaggtataatcaagttgacagccgggaataaccatgagagccactgtgg
gagacctaaagacatcaagaaacatgtcaccaatctgagtgtgccacctg
gctttagcagtgaagcagcaaagggacacagtgggaaagcaaggaggctc
atctcagatggtactttgttgatgcattcaaacaagcaatcaaaaggtgc
atgggggttgggtggggcattgaagacgtatgagagtgagggacctgaag
ccatttgagaactgccaactagcggagcagcaccacccaatgagaaaccc
tgtctcaagcaagatagaagtgacattgtcttgactgccacatgtacgca
cctgcactcacacacatgaacattcgtgcacaggcagacacacacacaca
cacacacacattacagtactccatggtgactagacagctacttattgtga
tgtcccttcttacaatgcagcacacatggactgagatggctcacactaca
ttccagactgagtagaagttgaggtagggggggttgttt
gaattctgggcagcctagtctacagagtgagttccatgacagccaaaggt
acacacagaggaacatttttttttttccaaaaatgaacaaacaaaagaga
attaattttgccttgttttatttttaaattgacagcagccactaaggact
actaaagttttttggaaaagaaaaattacgagtaagaagtagaccattgt
gaccgaagagacagatgctgagaagcggcgtgccactcagggggagccat
tagatgcaaattaagagagattaccaggttggggcttctgaacttaccga
atcaaagcacaccctgttcagagctggtgcctgtgtgttgaaatggagac
ttctgtatacttttactcaaagtacggatggactgatataatctctctgg
agggtgaagagctgagaaaagtctcaaaagttcctgttggtcctggtgat
tcctatcgatgggaaattttggaactgaatattcagaatttgaacaaaga
catgcaggccagagaattatttgtagtaaggtaaaattgaaacaaacaaa
caaacaacaagcccaaccactctctggagttcaaaacactattcattagt
tggctcacaaaggagaagagtattttgtggggttttagagagaaagaaga
gcccaggggtcgggaaggtatatgaaggttgctgaaagaagttggggata
gttgggaactctgtccaggtgacacagggttcacaatatcagaaaacaag
tttggatgattttgtggcagggtctctctcactccctcagaagggttaag
agggtgaggactctattgaccatctttgattcattcctttcattggtgta
gactgaatgtttggtgggaaacatgggaaaccgttctttcagatgtgaat
ggtgttgagtgccatgtgacagggttgaagtgtcaccacacagtccttga
ggacccagtcacagtggcagagttcttcacaggaagcagtgttgttgttt
caggcattcatgagatggtgttcagcagttcatttgacttagtcagtagg
gggtgcctgatgctggcagcaacgttacagatagcactgttatgagtggt
tagtccttgcttggttcatcatgtccaccggactacaatcggtatcactc
aatgttggtgccgtgcagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_174406707_174407271
seq2: B6Ng01-133C09.b_594_1146 (reverse)

seq1  AAACAACCCCCCCTACCTTCAACTTCTACTCAGTCTGGAATGTGGTGGTG  50
      ||||||||||||||||| ||||||||||||||||||||||||| || |||
seq2  AAACAACCCCCCCTACC-TCAACTTCTACTCAGTCTGGAATGTAGT-GTG  48

seq1  AGCCATCTCAGTCCATGTGTGCCTGCCATTTGTTAAGAAGGGACCATCAC  100
      ||||||||||||||||||||| ||| ||||   |||||||||| ||||| 
seq2  AGCCATCTCAGTCCATGTGTG-CTG-CATT--GTAAGAAGGGA-CATCA-  92

seq1  CAATAAGTAGCTGTCTAGGTCCACCATGGGAGTACTGTAATGTGTGTGTG  150
      ||||||||||||||||||   |||||| ||||||||||||||||||||||
seq2  CAATAAGTAGCTGTCTAG--TCACCAT-GGAGTACTGTAATGTGTGTGTG  139

seq1  TGTGTGTGTGTGTCTGCCTGTGCACGAATGTTCATGTGTGTGAGTGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTCTGCCTGTGCACGAATGTTCATGTGTGTGAGTGCAGG  189

seq1  TGCGTACATGTGGCAGTCAAGACAATGTCACCTTCTATCTTGCTTGAGAC  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGCGTACATGTGGCAGTCAAGACAATGTCA-CTTCTATCTTGCTTGAGAC  238

seq1  AGGGTTTCTCATTGGGTGGTGCTGCTCCGCTAGTTGGCAGTTCTCAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCATTGGGTGGTGCTGCTCCGCTAGTTGGCAGTTCTCAAATG  288

seq1  GCTTCAGGTCCCTCACTCTCATACGTCTTCAATGCCCCACCCAACCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGGTCCCTCACTCTCATACGTCTTCAATGCCCCACCCAACCCCCA  338

seq1  TGCACCTTTTGATTGCTTGTTTGAATGCATCAACAAAGTACCATCTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTTTTGATTGCTTGTTTGAATGCATCAACAAAGTACCATCTGAGA  388

seq1  TGAGCCTCCTTGCTTTCCCACTGTGTCCCTTTGCTGCTTCACTGCTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTCCTTGCTTTCCCACTGTGTCCCTTTGCTGCTTCACTGCTAAAG  438

seq1  CCAGGTGGCACACTCAGATTGGTGACATGTTTCTTGATGTCTTTAGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGGCACACTCAGATTGGTGACATGTTTCTTGATGTCTTTAGGTCT  488

seq1  CCCACAGTGGCTCTCATGGTTATTCCCGGCTGTCAACTTGATTATACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTGGCTCTCATGGTTATTCCCGGCTGTCAACTTGATTATACCTG  538

seq1  GAATGAACTACAGTC  565
      |||||||||||||||
seq2  GAATGAACTACAGTC  553

seq1: chr2_174317510_174318718
seq2: B6Ng01-133C09.g_69_1240

seq1  GAATTCTGGGCAGCCTAGTCTACAGAGTGAGTTCCATGACAGCCAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCAGCCTAGTCTACAGAGTGAGTTCCATGACAGCCAAAGGT  50

seq1  ACACACAGAGGAACATTTTTTTTTTTCCAAAAATGAACAAACAAAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGAGGAACATTTTTTTTTTTCCAAAAATGAACAAACAAAAGAGA  100

seq1  ATTAATTTTGCCTTGTTTTATTTTTAAATTGACAGCAGCCACTAAGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTGCCTTGTTTTATTTTTAAATTGACAGCAGCCACTAAGGACT  150

seq1  ACTAAAGTTTTTTGGAAAAGAAAAATTACGAGTAAGAAGTAGACCATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTTTTTTGGAAAAGAAAAATTACGAGTAAGAAGTAGACCATTGT  200

seq1  GACCGAAGAGACAGATGCTGAGAAGCGGCGTGCCACTCAGGGGGAGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGAAGAGACAGATGCTGAGAAGCGGCGTGCCACTCAGGGGGAGCCAT  250

seq1  TAGATGCAAATTAAGAGAGATTACCAGGTTGGGGCTTCTGAACTTACCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCAAATTAAGAGAGATTACCAGGTTGGGGCTTCTGAACTTACCGA  300

seq1  ATCAAAGCACACCCTGTTCAGAGCTGGTGCCTGTGTGTTGAAATGGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCACACCCTGTTCAGAGCTGGTGCCTGTGTGTTGAAATGGAGAC  350

seq1  TTCTGTATACTTTTACTCAAAGTACGGATGGACTGATATAATCTCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATACTTTTACTCAAAGTACGGATGGACTGATATAATCTCTCTGG  400

seq1  AGGGTGAAGAGCTGAGAAAAGTCTCAAAAGTTCCTGTTGGTCCTGGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAAGAGCTGAGAAAAGTCTCAAAAGTTCCTGTTGGTCCTGGTGAT  450

seq1  TCCTATCGATGGGAAATTTTGGAACTGAATATTCAGAATTTGAACAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCGATGGGAAATTTTGGAACTGAATATTCAGAATTTGAACAAAGA  500

seq1  CATGCAGGCCAGAGAATTATTTGTAGTAAGGTAAAATTGAAACAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGCCAGAGAATTATTTGTAGTAAGGTAAAATTGAAACAAACAAA  550

seq1  CAAACAACAAGCCCAACCACTCTCTGGAGTTCAAAACACTATTCATTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAAGCCCAACCACTCTCTGGAGTTCAAAACACTATTCATTAGT  600

seq1  TGGCTCACAAAGGAGAAGAGTATTTTGTGGGGTTTTAGAGAGAAAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACAAAGGAGAAGAGTATTTTGTGGGGTTTTAGAGAGAAAGAAGA  650

seq1  GCCCAGGGGTCGGGAAGGTATATGAAGGTTGCTGAAAGAAGTTGGGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGGTCGGGAAGGTATATGAAGGTTGCTGAAAGAAGTTGGGGATA  700

seq1  GTTGGGAACTCTGTCCAGGTGACACAGGGTTCACAATATCAGAAAACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAACTCTGTCCAGGTGACACAGGGTTCACAATATCAGAAAACAAG  750

seq1  TTTGGATGATTTTGTGGCAGGGTCTCTCTCACTCCCTCAGAAGGGTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGATTTTGTGGCAGGGTCTCTCTCACTCCCTCAGAAGGGTTAAG  800

seq1  AGGGTGAGGACTCTATTGACCATCTTTGATTCATTCCTTTCATTGGTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGGACTCTATTGACCATCTTTGATTCATTCCTTTCATTGGTGTA  850

seq1  GACTGAATGTTTGGTGGGAAACATGGGAAACCGTTCTTTCAGATGTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACTGAATGTTTGGTGGGAAACATGGGAAACCGTTCTTTCAGATG-TGAA  899

seq1  TGGTGTTGAGTGCCATGTGACAGGGTTGAAGTGTCACCACACAGCCCTTG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGTGTTGAGTGCCATGTGACAGGGTTGAAGTGTCACCACACAGTCCTTG  949

seq1  AGGACCCAGTCAACAGTGGGCAGAGGTCCTTCACAGGGAAGCCAGTTGGT  1000
      ||||||||||| ||||| |||||| || ||||||| ||||| ||| || |
seq2  AGGACCCAGTC-ACAGT-GGCAGA-GTTCTTCACA-GGAAG-CAG-TGTT  993

seq1  GATGTTTCAGGGCATTCATGAGATGGTGTTCAAGCAGTTTCATTTGGACT  1050
      | ||||||| ||||||||||||||||||||| ||||| ||||||| ||| 
seq2  GTTGTTTCA-GGCATTCATGAGATGGTGTTC-AGCAG-TTCATTT-GAC-  1038

seq1  TTAGTCAGTAGGGGGTGCCCTGATGCTGGGAAAGCCAACGTTAACCAAGA  1100
      ||||||||||||||||| ||||||||||| |    ||||||||    |||
seq2  TTAGTCAGTAGGGGGTG-CCTGATGCTGGCA---GCAACGTTA---CAGA  1081

seq1  GTAGCACTTGTTCATGAGTGTTAGGTCCTTTGTCTTGGTTTCTATCCATG  1150
       |||||| |||| ||||||| |  ||||||   |||||||  |   ||||
seq2  -TAGCAC-TGTT-ATGAGTGGTTAGTCCTT--GCTTGGTTCAT---CATG  1123

seq1  TCCCCACTCAGGACTCACTACTGTTATCAACTCTCAATGTTGTGTGCACT  1200
      ||    | | ||||| || |  | |||||   |||||||||| ||||  |
seq2  TC----CACCGGACT-ACAATCGGTATCA---CTCAATGTTG-GTGCCGT  1164

seq1  GTCAGGGAT  1209
      | |||||||
seq2  G-CAGGGAT  1172