BAC Information

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BAC

Clone NameB6Ng01-133H06
Chromosome2 (Build37)
Map Location 126,464,483 - 126,572,866
singlet/doubletdoublet
Overlap geneGabpb1, Usp8, LOC100043714
Upstream geneShc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc
Downstream geneUsp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133H06.bB6Ng01-133H06.g
ACCDH933995DH933996
length1,128656
definitionDH933995|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H06, 5' end.DH933996|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,464,483 - 126,465,614)(126,572,211 - 126,572,866)
sequence
gaattcagttcctcaaaggaggaaatagtaaaataagcaattatcttttg
catttacaaacataacctgtttagcaaacatcagctttctgtaagagaat
ttccaggccaatttcaaattcttttgaaagaaaagaattttcagtgactt
gtgaggatggtatgcataagtttaacaaaaaaatcagagatggaatttaa
aaaccaaagacagtccaagtgttaccaggttaacaaactttgttacaaac
aaattctgcactcattcaatcattcattcaatatttatttattgagggct
tgccatatgtttaaggccaaaacaaaatgatgacactattcactttcatt
ctttatcaaaacatggccagtaataaatataaacaacaaattaatataat
aatagtgataataataataataatgaaacaaaatttattttggatggctg
cagcaaaacacaccgggtataaggctccttacttcaatttctgcacattc
cacccggctctcaattatttccatacactgtctcttagctggtggctctt
cactgatgacagtttcttcagcaatgtctgttgctggtactgtcaatact
aaaatgaaagggaggcacaggttacatcactctccgacagctacgagata
acgtctctatacagttgatgctactctcctgtagcacgcagcatcaggca
tttccaaacactgctcctctatgaagaggtccctgctggttcccttcatt
ttctcactgaagcccacttactgtagtgctactgatggcactcttacaca
taatatactcatccacacagctgaatggtcaaagtaatattaaagatgca
tatgttaagagtatcctgggcacctgctgacagaattgcttttattagtt
tcttgcatattagtcttacaataatttgtgtaaagacaacaaatacccat
gggaggcaaacagaaagcacacccactcgagcaccaactccatctttttc
tcagcacacagctatcttcggcctgctaatactgtccctgaataccaaca
actgtgaacactgtagcagtgtcctgtgatttgtgggcactgtttacatt
ttgatgttttcatataaaatgaacatac
gaattcactgagagctgtgtgactcttctctgtctttaacagcaattcct
aaaactttaaccacgcagttacttccgcagtgactgtgtttgcaacactg
gagatgagtgcacagaggcctggtggtgagtggcagaggctctccatggt
ggttggtgagagaaggagccacacaggcctgtcaggtgattatctcctag
ccacctagccctcctaccacagctgcttctgtatccacttacaaagatca
tgtagtgtgctctgtggaaatgcagggcagcatgctgaagcatgggtctc
tacgctgactacagatgcttctagctttacagagatttttgtttgtaaca
ctttcttaactaaatgaaagacacttctcatcatggagaaaatatttata
aatcttacttcaaataagggacttagccagaatattacaaattcatacgg
ctcagtcaaaattgccagtcattaagttggctacgattttgtcaaagaca
gataagatgggtgtgatagtgactacctataacctcagcttttgcagtgt
agaggcaaaaaggtcatgagagttcaaggttagtctgggctctatgagac
catctcaaaaaacaaagcgaagataaacataagagacgtcaatgtcgccg
ggcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126464483_126465614
seq2: B6Ng01-133H06.b_45_1172

seq1  GAATTCAGTTCCTCAAAGGAGGAAATAGTAAAATAAGCAATTATCTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCTCAAAGGAGGAAATAGTAAAATAAGCAATTATCTTTTG  50

seq1  CATTTACAAACATAACCTGTTTAGCAAACATCAGCTTTCTGTAAGAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAAACATAACCTGTTTAGCAAACATCAGCTTTCTGTAAGAGAAT  100

seq1  TTCCAGGCCAATTTCAAATTCTTTTGAAAGAAAAGAATTTTCAGTGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCCAATTTCAAATTCTTTTGAAAGAAAAGAATTTTCAGTGACTT  150

seq1  GTGAGGATGGTATGCATAAGTTTAACAAAAAAATCAGAGATGGAATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGATGGTATGCATAAGTTTAACAAAAAAATCAGAGATGGAATTTAA  200

seq1  AAACCAAAGACAGTCCAAGTGTTACCAGGTTAACAAACTTTGTTACAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAGACAGTCCAAGTGTTACCAGGTTAACAAACTTTGTTACAAAC  250

seq1  AAATTCTGCACTCATTCAATCATTCATTCAATATTTATTTATTGAGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGCACTCATTCAATCATTCATTCAATATTTATTTATTGAGGGCT  300

seq1  TGCCATATGTTTAAGGCCAAAACAAAATGATGACACTATTCACTTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATGTTTAAGGCCAAAACAAAATGATGACACTATTCACTTTCATT  350

seq1  CTTTATCAAAACATGGCCAGTAATAAATATAAACAACAAATTAATATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCAAAACATGGCCAGTAATAAATATAAACAACAAATTAATATAAT  400

seq1  AATAGTGATAATAATAATAATAATGAAACAAAATTTATTTTGGATGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGATAATAATAATAATAATGAAACAAAATTTATTTTGGATGGCTG  450

seq1  CAGCAAAACACACCGGGTATAAGGCTCCTTACTTCAATTTCTGCACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAACACACCGGGTATAAGGCTCCTTACTTCAATTTCTGCACATTC  500

seq1  CACCCGGCTCTCAATTATTTCCATACACTGTCTCTTAGCTGGTGGCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGGCTCTCAATTATTTCCATACACTGTCTCTTAGCTGGTGGCTCTT  550

seq1  CACTGATGACAGTTTCTTCAGCAATGTCTGTTGCTGGTACTGTCAATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATGACAGTTTCTTCAGCAATGTCTGTTGCTGGTACTGTCAATACT  600

seq1  AAAATGAAAGGGAGGCACAGGTTACATCACTCTCCGACAGCTACGAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAGGGAGGCACAGGTTACATCACTCTCCGACAGCTACGAGATA  650

seq1  ACGTCTCTATACAGTTGATGCTACTCTCCTGTAGCACGCAGCATCAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTCTATACAGTTGATGCTACTCTCCTGTAGCACGCAGCATCAGGCA  700

seq1  TTTCCAAACACTGCTCCTCTATGAAGAGGTCCCTGCTGGTTCCCTTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAACACTGCTCCTCTATGAAGAGGTCCCTGCTGGTTCCCTTCATT  750

seq1  TTCTCACTGAAGCCCACTTACTGTAGTGCTACTGATGGCACTCTTACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTGAAGCCCACTTACTGTAGTGCTACTGATGGCACTCTTACACA  800

seq1  TAATATACTCATCCACACAGCTGAATGGTCAAAGTAATATTAAAGATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACTCATCCACACAGCTGAATGGTCAAAGTAATATTAAAGATGCA  850

seq1  TATGTTAAGAGTATCCTGGGCACCTGCTGACAGAATTGCTTTTATTAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAAGAGTATCCTGGGCACCTGCTGACAGAATTGCTTTTATTAGTT  900

seq1  TCTTGCATATTAGTCTTACAATAATTTGTGTAAAGACAACAAATACCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATATTAGTCTTACAATAATTTGTGTAAAGACAACAAATACCCAT  950

seq1  GGGAGGCAAACAGAAAGCACACCCACTCGAGCACCAACTCCATC-TTTTC  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGAGGCAAACAGAAAGCACACCCACTCGAGCACCAACTCCATCTTTTTC  1000

seq1  TCAGCACACAGCTATCTTCGGCCTGCTAATACTGTCCCTGAATACACACA  1049
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TCAGCACACAGCTATCTTCGGCCTGCTAATACTGTCCCTGAATACCAACA  1050

seq1  ACTGTGAACACTGTAGCAGTGTCCCTGGTGAATCTGTGGGCACTGTTTAC  1099
      ||||||||||||||||||||||||   ||| || ||||||||||||||||
seq2  ACTGTGAACACTGTAGCAGTGTCC--TGTG-ATTTGTGGGCACTGTTTAC  1097

seq1  ATTTTTGATGTTTTCATATAAACATGAACATAC  1132
      | |||||||||||||||||||| ||||||||||
seq2  A-TTTTGATGTTTTCATATAAA-ATGAACATAC  1128

seq1: chr2_126572211_126572866
seq2: B6Ng01-133H06.g_68_723 (reverse)

seq1  CATGCCCGGCGACATTGACGTCTCTTATGTTTATCTTCGCTTTGTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCGGCGACATTGACGTCTCTTATGTTTATCTTCGCTTTGTTTTTT  50

seq1  GAGATGGTCTCATAGAGCCCAGACTAACCTTGAACTCTCATGACCTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTCTCATAGAGCCCAGACTAACCTTGAACTCTCATGACCTTTTT  100

seq1  GCCTCTACACTGCAAAAGCTGAGGTTATAGGTAGTCACTATCACACCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTACACTGCAAAAGCTGAGGTTATAGGTAGTCACTATCACACCCAT  150

seq1  CTTATCTGTCTTTGACAAAATCGTAGCCAACTTAATGACTGGCAATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGTCTTTGACAAAATCGTAGCCAACTTAATGACTGGCAATTTTG  200

seq1  ACTGAGCCGTATGAATTTGTAATATTCTGGCTAAGTCCCTTATTTGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCGTATGAATTTGTAATATTCTGGCTAAGTCCCTTATTTGAAGT  250

seq1  AAGATTTATAAATATTTTCTCCATGATGAGAAGTGTCTTTCATTTAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATAAATATTTTCTCCATGATGAGAAGTGTCTTTCATTTAGTTA  300

seq1  AGAAAGTGTTACAAACAAAAATCTCTGTAAAGCTAGAAGCATCTGTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGTTACAAACAAAAATCTCTGTAAAGCTAGAAGCATCTGTAGTC  350

seq1  AGCGTAGAGACCCATGCTTCAGCATGCTGCCCTGCATTTCCACAGAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTAGAGACCCATGCTTCAGCATGCTGCCCTGCATTTCCACAGAGCAC  400

seq1  ACTACATGATCTTTGTAAGTGGATACAGAAGCAGCTGTGGTAGGAGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATGATCTTTGTAAGTGGATACAGAAGCAGCTGTGGTAGGAGGGCT  450

seq1  AGGTGGCTAGGAGATAATCACCTGACAGGCCTGTGTGGCTCCTTCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTAGGAGATAATCACCTGACAGGCCTGTGTGGCTCCTTCTCTCA  500

seq1  CCAACCACCATGGAGAGCCTCTGCCACTCACCACCAGGCCTCTGTGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACCATGGAGAGCCTCTGCCACTCACCACCAGGCCTCTGTGCACT  550

seq1  CATCTCCAGTGTTGCAAACACAGTCACTGCGGAAGTAACTGCGTGGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCAGTGTTGCAAACACAGTCACTGCGGAAGTAACTGCGTGGTTAA  600

seq1  AGTTTTAGGAATTGCTGTTAAAGACAGAGAAGAGTCACACAGCTCTCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGGAATTGCTGTTAAAGACAGAGAAGAGTCACACAGCTCTCAGT  650

seq1  GAATTC  656
      ||||||
seq2  GAATTC  656