BAC Information

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BAC

Clone NameB6Ng01-133I16
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,224 - 41,059,737140,574,150 - 140,575,328
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133I16.bB6Ng01-133I16.g
ACCDH934060DH934061
length9881,163
definitionDH934060|Mus musculus domesticus DNA, BAC clone: B6Ng01-133I16, 5' end.DH934061|Mus musculus domesticus DNA, BAC clone: B6Ng01-133I16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(140,574,150 - 140,575,328)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcctc
tatctgatttaggataggtacagatcctttcccaatctgctggtggcctt
tttgtcttattgacggtgtcttttgccttacagaagcttttcaattttat
gaggtcccatttgtcaattctcgatcttactgcacaagccattgctgttc
aattcaggaatttttcccctgtacccatatcttcaaggcttttccccact
ttctcctctataagtttcactgtctctggttttatgtggatccacttaga
tttgaccttagtacaaggagatgagaatggatcaattctcattcttctac
atgataactgccagttgtgccagcaccatttgttgaaaatgctgtcttat
ttccactggatggttttagctcccttctcaaagatcaagtgaccataggt
gtgtgggttcatttctaggtcttcaattctattccattgatctacttgtc
tgtcgccataccagtaccatgcagtttttatcacaattgctctgtagtac
agctttaggtcaggcatggtgattccaccagaggttcttttatccttgag
aagagtttttgctatcctaggttttttgttattccagatgaatttgcaga
ttgccctttttaattcgttgaagaattgagtaggaattttgatggggatt
gcattgaatctgtagattactttgacaagatagtcattgttagtatattg
atcctgccaatccatgagaatgggagatctttctaccttctgagattttc
tttaatttctttcttcagagactggaagttcttatcatacagatctttca
ctttcttagttaaagtcacgccaaggtattttatatcattcgtgactatg
tgaaggtgttgttccctaattctttctcagcctgttta
gaattcccatcagccgtggagtgacaaacatcaaaacaatgaaagctggg
atggcaggttaccactagtcattgaatgggtggagagtcataggggacac
cacccccccaagaaagaaatgttacccagaaatatggctagacaagaaag
aattcagatgactgtcacatccatgcccaataaaaatggccatatgcttc
gttctggacttctcactgctactagaaatatcaatagaacatttaaaaga
actttagtaaaattttggggggtttaaaaaatgtccataggctttttaaa
cctttctgcaaagctgggtcacattctcatgataaagagagtcatatttg
ttttcaagaccttcattttaaggggcagaatggttcggtgcagggaaacc
gagaactggggaaagttgtagtcttccctgcaaggaaataaactacaaaa
tagcaattccagataatgtcatttcaagtgactctttgcttctgaaaggt
caatgattaatagaagatgcactcaggcatttgctatgtgactactgtga
tgacagccaaggtagcaggtaaggggatttagtcaagaacaaatatttga
gaggtattactgtgacagacaaggggcttgcaaggatgggcctgtaaaag
tcagagaatgtctatctttgaggaatgcagcatctatttaattgaaaaga
taagcatgatagctgccatacaatggtaaaagggaaagttgcatgagttc
aaaagaagaataaatacccatatcagccaggctcagtgtataaacactcc
cagtgattgggacacaatctagcattgtcctggttctaagaatcatttac
cacactcacatcattctttctattgtaatcccttatctccaacctcagtt
ctccattttgacttaactagaagaacacaaagtcagatgatgtctaagtc
agacctgaaccttttaccttccgggtttacattactgttgtgtatttgag
ggagaaaagaacacaggaattctgctgctctcctcaacacagttgatggt
taactcagaagaataatacatatcccatgcacctcttgcgaatcagtagc
cagaaaagacactattggccaactaattttatgactcttgacctctcctt
aggtgtcttttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-133I16.b_46_550 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGAGAAGGGAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      ||||||| ||||||||||||||||||||||||||||||||||||||  ||
seq2  GTGGAAATAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCAGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      ||||||||||||||||| ||||||||||| ||  ||||||||||||||||
seq2  TATCATGTAGAAGAATGAGAATTGATCCATTCTCATCTCCTTGTACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      |||||||||||||||||         ||||||||||||||||||| ||||
seq2  GTCAAATCTAAGTGGAT---------CCACATAAAACCAGAGACAGTGAA  191

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGTACAGGGG  241

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      ||||||||||| || ||||||||||||||||||| ||||||| |||||| 
seq2  AAAAATTCCTGAATTGAACAGCAATGGCTTGTGCAGTAAGATCGAGAATT  291

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      ||||||||||||||||| ||| || |||||||||| ||||||||||||||
seq2  GACAAATGGGACCTCATAAAATTGAAAAGCTTCTGTAAGGCAAAAGACAC  341

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCT  399
      ||||||||||||||||||| ||||| |||||||||||||||||| |||||
seq2  CGTCAATAAGACAAAAAGGCCACCAGCAGATTGGGAAAGGATCTGTACCT  391

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAG  449
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  ATCCTAAATCAGATAGAGGACTAATATCCAATATATATAAAGAACTCAAG  441

seq1  AAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AAGGTGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGGCTCAGA  490

seq1  GCTAAACAAAGAATT  514
      |||||||||||||||
seq2  GCTAAACAAAGAATT  505

seq1: chr2_140574150_140575328
seq2: B6Ng01-133I16.g_66_1228 (reverse)

seq1  GGAAAAGACATCCTAAGGAGATGTTCACAGAGTCAT-AAATTAGTTGGCC  49
      |||||||||| |||||||||| | ||| |||||||| |||||||||||||
seq2  GGAAAAGACA-CCTAAGGAGA-GGTCA-AGAGTCATAAAATTAGTTGGCC  47

seq1  AATAGTTGGTTCTTTTCTGGCTTACTGATTCGCAAGAGGTGCATTTGTGA  99
      ||||||    ||||||||||| |||||||||||||||||||||  || ||
seq2  AATAGT---GTCTTTTCTGGC-TACTGATTCGCAAGAGGTGCA--TGGGA  91

seq1  TAATGTTATTTATTCTTCTGAGTTAACCATTCAACTGTGTTGAGGAGAGC  149
      | ||||   |||||||||||||||||||| ||||||||||||||||||||
seq2  T-ATGT--ATTATTCTTCTGAGTTAACCA-TCAACTGTGTTGAGGAGAGC  137

seq1  AGCAGAATTCCTGTGGTTCTTTTCTCCCTCAAATACACAATACAGTTATG  199
      |||||||||||||| ||||||||||||||||||||||||  ||||| |||
seq2  AGCAGAATTCCTGT-GTTCTTTTCTCCCTCAAATACACA--ACAGTAATG  184

seq1  TAAACCCGGAAGGTAAAAGGTTCAGGTCTGACTTAGACATCATCTGACTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCGGAAGGTAAAAGGTTCAGGTCTGACTTAGACATCATCTGACTT  234

seq1  TGTGTTCTTCTTAGTTAAGTCAAAATGGAGAACTGAGGTTGGAGATAAGG  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTC-TAGTTAAGTCAAAATGGAGAACTGAGGTTGGAGATAAGG  283

seq1  GATTACAATAGAAAGAATGATGTGAGTGTGGTAAATGATTCTTAGAACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAATAGAAAGAATGATGTGAGTGTGGTAAATGATTCTTAGAACCA  333

seq1  GGACAATGCTAGATTGTGTCCCAATCACTGGGAGTGTTTATACACTGAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATGCTAGATTGTGTCCCAATCACTGGGAGTGTTTATACACTGAGC  383

seq1  CTGGCTGATATGGGTATTTATTCTTCTTTTGAACTCATGCAACTTTCCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGATATGGGTATTTATTCTTCTTTTGAACTCATGCAACTTTCCCT  433

seq1  TTTACCATTGTATGGCAGCTATCATGCTTATCTTTTCAATTAAATAGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATTGTATGGCAGCTATCATGCTTATCTTTTCAATTAAATAGATG  483

seq1  CTGCATTCCTCAAAGATAGACATTCTCTGACTTTTACAGGCCCATCCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCCTCAAAGATAGACATTCTCTGACTTTTACAGGCCCATCCTTG  533

seq1  CAAGCCCCTTGTCTGTCACAGTAATACCTCTCAAATATTTGTTCTTGACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCTTGTCTGTCACAGTAATACCTCTCAAATATTTGTTCTTGACT  583

seq1  AAATCCCCTTACCTGCTACCTTGGCTGTCATCACAGTAGTCACATAGCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCTTACCTGCTACCTTGGCTGTCATCACAGTAGTCACATAGCAA  633

seq1  ATGCCTGAGTGCATCTTCTATTAATCATTGACCTTTCAGAAGCAAAGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGAGTGCATCTTCTATTAATCATTGACCTTTCAGAAGCAAAGAGT  683

seq1  CACTTGAAATGACATTATCTGGAATTGCTATTTTGTAGTTTATTTCCTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAAATGACATTATCTGGAATTGCTATTTTGTAGTTTATTTCCTTG  733

seq1  CAGGGAAGACTACAACTTTCCCCAGTTCTCGGTTTCCCTGCACCGAACCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGACTACAACTTTCCCCAGTTCTCGGTTTCCCTGCACCGAACCA  783

seq1  TTCTGCCCCTTAAAATGAAGGTCTTGAAAACAAATATGACTCTCTTTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCCTTAAAATGAAGGTCTTGAAAACAAATATGACTCTCTTTATC  833

seq1  ATGAGAATGTGACCCAGCTTTGCAGAAAGGTTTAAAAAGCCTATGGACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATGTGACCCAGCTTTGCAGAAAGGTTTAAAAAGCCTATGGACAT  883

seq1  TTTTTAAACCCCCCAAAATTTTACTAAAGTTCTTTTAAATGTTCTATTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACCCCCCAAAATTTTACTAAAGTTCTTTTAAATGTTCTATTGA  933

seq1  TATTTCTAGTAGCAGTGAGAAGTCCAGAACGAAGCATATGGCCATTTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAGTAGCAGTGAGAAGTCCAGAACGAAGCATATGGCCATTTTTA  983

seq1  TTGGGCATGGATGTGACAGTCATCTGAATTCTTTCTTGTCTAGCCATATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCATGGATGTGACAGTCATCTGAATTCTTTCTTGTCTAGCCATATT  1033

seq1  TCTGGGTAACATTTCTTTCTTGGGGGGGTGGTGTCCCCTATGACTCTCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTAACATTTCTTTCTTGGGGGGGTGGTGTCCCCTATGACTCTCCA  1083

seq1  CCCATTCAATGACTAGTGGTAACCTGCCATCCCAGCTTTCATTGTTTTGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCAATGACTAGTGGTAACCTGCCATCCCAGCTTTCATTGTTTTGA  1133

seq1  TGTTTGTCACTCCACGGCTGATGGGAATTC  1179
      ||||||||||||||||||||||||||||||
seq2  TGTTTGTCACTCCACGGCTGATGGGAATTC  1163