BAC Information

Click to search

BAC

Clone NameB6Ng01-133O02
Chromosome6 (Build37)2 (Build37)
Map Location 57,034,413 - 57,035,568142,777,293 - 142,777,698
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30
Downstream geneV1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133O02.bB6Ng01-133O02.g
ACCDH934317DH934318
length1,133828
definitionDH934317|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O02, 5' end.DH934318|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,034,413 - 57,035,568)(142,777,293 - 142,777,698)
sequence
gaattcattgccattgcctgatactcttaaataatttaaatgcaaaaatt
gtttttgaaaattgagtttagagcaggtgtaactggaagtacacagacac
tgcctagaatattacattcccacacttacaagccagttcccctgagatga
agcagcagcagtagaagtgttacttaagagactatagggaagcaatcata
cccaaagcacaagttacatgacattagtttgtgaaagatataagaatatt
aattgaaaatgtgtgtacgtacatgtgtacatgtgtatgtgtgtacatgt
ttctgtgtgtgtgaaattattgcactactggcccaagaatagaacactag
catagtgtgttgcagggctactaacaagaatacctgtgcatcacttgagt
gaaagactgaattatataaaattcccatttcaaatatgttccttaaaata
ttgcatatgagactatgttttacatatatatcagtatacatccactgtaa
aaactaatgcatttcatgatactttcaattaatttataatacccagtgat
gatcttcattacttcagcctttcctctctctagccaccattctccttgcc
ccatccttattcaagtacacctctcttactgtcacatacataatcataga
tcacattaagtgaaatctgtgaatttttattaatcattacactgacactt
ctatgtctacaggcatctgttgtgtgcttatcatacagtatggctcaaaa
ggagtattctaagcagagaattctctaatccttcattgtagaaaatgctg
cttcatataaccacctaattactgttctcactattaatgaagtaaaaaaa
gaaacattcactcagctgggcctttgataaaaatccttgtagaatgaggc
cctgagaagcagttataagaagaaatggaatcagatcatcaccctgtaga
cacacagttacatgtcatctggagagcacttctcactgtgagttgtacac
atggttcatcaatggaaagtgaacttcctattcatgagacagtagagtag
acagctgtgtctgggtgtcatgggtgagcattctcccagactatatctgt
catatagataacttatctccactctctgaaaaa
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
tttgtcaattctcgatcttacagagcaagccattgctgttctgttcagga
atttttcccctgtacccatatcttcaaggcttttccccactttctcctct
ataagtttcagtgtctctggttttatgtgaagttccttgatccacttaga
tttgaccttagtacaaggagataagtatggatcgattcgcattcttgtaa
tccctttgggaatgtgatctattttggcagaagtttggatagcaattcct
gatgtcttcatgtttccattcgactggagtacgcttccctatcattttac
tcaaagctggtgcctgtcttttaaactaaggtgtgtttcttgtaggcagc
agacagctgcattttcatccacactgtgttttgagtggagaattcaggcc
attcatatgtgaattattattgaaatgtgtgtgttagttctgatcatcat
gttgttggtttttggtgttgtaatcttatttggtaattttgttttgataa
ttatggcttcatattttttcctcattctcactcctatcctcattcttttc
tcaacccaaaataatacttcctgaattacttttaggtttagtttgtggaa
tataatttttagctgcctatgtttggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57034413_57035568
seq2: B6Ng01-133O02.b_47_1179 (reverse)

seq1  TTTTTCAGAAGAAGTGAGATAAGTTAATCTATATGGACAGATATAGTCTG  50
      |||||||| |||   |||||||||| |||||||| |||||||||||||| 
seq2  TTTTTCAG-AGAGTGGAGATAAGTT-ATCTATAT-GACAGATATAGTCT-  46

seq1  GGGAGAATGGCTCACCCATGGACACCCAGACCACAGCTGTTCCTACTCTA  100
      |||||||| |||||||||| |||||||||| |||||||||  ||||||||
seq2  GGGAGAAT-GCTCACCCAT-GACACCCAGA-CACAGCTGT--CTACTCTA  91

seq1  CTGTTCTCATGGAATTAGGGAAGTTCACTTTTCCATTTGATGGAACCATG  150
      ||| |||||| ||||   |||||||||| |||||| ||||| ||||||||
seq2  CTG-TCTCAT-GAAT--AGGAAGTTCAC-TTTCCA-TTGAT-GAACCATG  134

seq1  TTGTAACAACTTCACAGTGAGAAGTGCCTTCTCCAGATGACATGTTAACT  200
       ||| ||||| ||||||||||||||||  ||||||||||||||| |||||
seq2  -TGT-ACAAC-TCACAGTGAGAAGTGC--TCTCCAGATGACATG-TAACT  178

seq1  GTGTGTCTACAGGGTGATGATCTGATTCCATTTCTTCCTTATAACTGCTT  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGTGTCTACAGGGTGATGATCTGATTCCATTTCTT-CTTATAACTGCTT  227

seq1  CTCAGGGCCTCATTCTACAAGGATTTTTATCAAAGGCCCAGCTGAGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGCCTCATTCTACAAGGATTTTTATCAAAGGCCCAGCTGAGTGAA  277

seq1  TGTTTCTTTTTTTACTTCATTAATAGTGAGAACAGTAATTAGGTGGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTTTTTACTTCATTAATAGTGAGAACAGTAATTAGGTGGTTAT  327

seq1  ATGAAGCAGCATTTTCTACAATGAAGGATTAGAGAATTCTCTGCTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAGCATTTTCTACAATGAAGGATTAGAGAATTCTCTGCTTAGAA  377

seq1  TACTCCTTTTGAGCCATACTGTATGATAAGCACACAACAGATGCCTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTTTTGAGCCATACTGTATGATAAGCACACAACAGATGCCTGTAG  427

seq1  ACATAGAAGTGTCAGTGTAATGATTAATAAAAATTCACAGATTTCACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAAGTGTCAGTGTAATGATTAATAAAAATTCACAGATTTCACTTA  477

seq1  ATGTGATCTATGATTATGTATGTGACAGTAAGAGAGGTGTACTTGAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCTATGATTATGTATGTGACAGTAAGAGAGGTGTACTTGAATAA  527

seq1  GGATGGGGCAAGGAGAATGGTGGCTAGAGAGAGGAAAGGCTGAAGTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGCAAGGAGAATGGTGGCTAGAGAGAGGAAAGGCTGAAGTAATG  577

seq1  AAGATCATCACTGGGTATTATAAATTAATTGAAAGTATCATGAAATGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATCACTGGGTATTATAAATTAATTGAAAGTATCATGAAATGCAT  627

seq1  TAGTTTTTACAGTGGATGTATACTGATATATATGTAAAACATAGTCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTACAGTGGATGTATACTGATATATATGTAAAACATAGTCTCAT  677

seq1  ATGCAATATTTTAAGGAACATATTTGAAATGGGAATTTTATATAATTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATATTTTAAGGAACATATTTGAAATGGGAATTTTATATAATTCAG  727

seq1  TCTTTCACTCAAGTGATGCACAGGTATTCTTGTTAGTAGCCCTGCAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACTCAAGTGATGCACAGGTATTCTTGTTAGTAGCCCTGCAACAC  777

seq1  ACTATGCTAGTGTTCTATTCTTGGGCCAGTAGTGCAATAATTTCACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCTAGTGTTCTATTCTTGGGCCAGTAGTGCAATAATTTCACACAC  827

seq1  ACAGAAACATGTACACACATACACATGTACACATGTACGTACACACATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACATGTACACACATACACATGTACACATGTACGTACACACATTT  877

seq1  TCAATTAATATTCTTATATCTTTCACAAACTAATGTCATGTAACTTGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAATATTCTTATATCTTTCACAAACTAATGTCATGTAACTTGTGC  927

seq1  TTTGGGTATGATTGCTTCCCTATAGTCTCTTAAGTAACACTTCTACTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTATGATTGCTTCCCTATAGTCTCTTAAGTAACACTTCTACTGCT  977

seq1  GCTGCTTCATCTCAGGGGAACTGGCTTGTAAGTGTGGGAATGTAATATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCATCTCAGGGGAACTGGCTTGTAAGTGTGGGAATGTAATATTC  1027

seq1  TAGGCAGTGTCTGTGTACTTCCAGTTACACCTGCTCTAAACTCAATTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGTGTCTGTGTACTTCCAGTTACACCTGCTCTAAACTCAATTTTC  1077

seq1  AAAAACAATTTTTGCATTTAAATTATTTAAGAGTATCAGGCAATGGCAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATTTTTGCATTTAAATTATTTAAGAGTATCAGGCAATGGCAAT  1127

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1133

seq1: chr2_142777293_142777698
seq2: B6Ng01-133O02.g_68_463 (reverse)

seq1  AAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTA  50

seq1  AGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAG  100

seq1  GAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCT  150
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGAAAGTGGGGAAAAGCCTTGAAGATATGGGTACAGGGGAAAAATTCCT  150

seq1  GAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGG  200
      |||||||| ||||||||||||  |||||||||||||||||||||      
seq2  GAACAGAACAGCAATGGCTTGCTCTGTAAGATCGAGAATTGACA------  194

seq1  ACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAG  250
          |||||||||||||||||||||||||||||||||||| ||| |||||
seq2  ----AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAG  240

seq1  ACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATC  300
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATC  290

seq1  AGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACT  340

seq1  TCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAA  390

seq1  GAATTC  406
      ||||||
seq2  GAATTC  396