BAC Information

Click to search

BAC

Clone NameB6Ng01-133P01
Chromosome2 (Build37)
Map Location 160,511,278 - 160,512,349
singlet/doubletsinglet
Overlap geneTop1
Upstream geneLOC100043689, Gm826, Mafb, LOC100043892
Downstream genePlcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133P01.bB6Ng01-133P01.g
ACCDH934361DH934362
length4271,062
definitionDH934361|Mus musculus domesticus DNA, BAC clone: B6Ng01-133P01, 5' end.DH934362|Mus musculus domesticus DNA, BAC clone: B6Ng01-133P01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttagaacacagggtaattctaaccctaacccctaatcctagaacacagg
ttaagaacacagaagtacagatgtcccttttctcagacttaactctccct
ccctccctccctcccttcctcccctccttcctttctttcttcccctccct
tccccttcccctccttcttcctttgaaccaaaactttctttgtattccaa
gaaattacaaaatccccggttccatgctagatttaaaggaagtgccacta
agccccgaaccattttgcttgggtttcccccctagaccgggtcccattaa
accctaaggaaccttgttttcccttttaaagcataaatgaatttagcccc
ctgaaagttcttccccccttctccaaagaaagggatttccgatgtggggg
gaaatggacctgtctccgccctaattc
gaattcacttaatgacttgggggattagaaggacaggcgtgtgtgctttg
cccccgattgtcgttgctggcctgcttgtcagcagtgagtcctgtagaga
atccagatgcttcacttgaacttcatcttcgaagtgtggtaactcactat
ttgctttcacacacgacacttaggatggggcattaactttgaaccattgg
atgttgtagtgtcttctttggatctccagggctttgtaattgaaggcgaa
acagctgtagaagtggcatttaggaattggggaaaatgtgctggaataag
aagagctaatctttttaaaccttcagattttgttgcaagcaaactggttt
taatgcttttagaaagaaaggagaatacattatctatacttcatgctgtg
aatatattttactgttgagactagatacttacacttcagatccaccactt
catgaatggcagctttattttgggaggccattttctttactgagttaagt
cagtgaggtctaatttgaagagatgtaacaagccaacctaggaaagaaca
ttccaaggtttctgagtgtttgtccgtgtcaccggcaattctccttcccc
ttccccttcccccatcatcatcatcactaccaccacctcctcctcctcca
ccaccaccactaccaccatcaccatatcactataagatagctgacataca
cgctcccctatctcattattagtaaatggcagagtcttctgaagttcaga
gtggcttgaaccattacataaaccaagacgaacctccactcctgctcctc
ctccttaattgttggaagtgttgaaattacagacgtgtgtacccaactta
atttaaaaaagaaaaaattagatattaaatttacgtgtatgagtaaatgt
tttgctcatatgtatctgtgcttgcctatttccatggagtaaaaatgaag
tgtggatatcctgagctagttataggtgatgtgagcttctggggagtgtt
ggaataaatctggctctgcaaaacaaggctctaatagtgctgagccaatc
ctctcagacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_160511278_160512349
seq2: B6Ng01-133P01.g_68_1129

seq1  GAATTCACTTAATGACTTGGGGGATTAGAAGGACAGGCGTGTGTGCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTAATGACTTGGGGGATTAGAAGGACAGGCGTGTGTGCTTTG  50

seq1  CCCCCGATTGTCGTTGCTGGCCTGCTTGTCAGCAGTGAGTCCTGTAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGATTGTCGTTGCTGGCCTGCTTGTCAGCAGTGAGTCCTGTAGAGA  100

seq1  ATCCAGATGCTTCACTTGAACTTCATCTTCGAAGTGTGGTAACTCACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATGCTTCACTTGAACTTCATCTTCGAAGTGTGGTAACTCACTAT  150

seq1  TTGCTTTCACACACGACACTTAGGATGGGGCATTAACTTTGAACCATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCACACACGACACTTAGGATGGGGCATTAACTTTGAACCATTGG  200

seq1  ATGTTGTAGTGTCTTCTTTGGATCTCCAGGGCTTTGTAATTGAAGGCGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTAGTGTCTTCTTTGGATCTCCAGGGCTTTGTAATTGAAGGCGAA  250

seq1  ACAGCTGTAGAAGTGGCATTTAGGAATTGGGGAAAATGTGCTGGAATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTAGAAGTGGCATTTAGGAATTGGGGAAAATGTGCTGGAATAAG  300

seq1  AAGAGCTAATCTTTTTAAACCTTCAGATTTTGTTGCAAGCAAACTGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTAATCTTTTTAAACCTTCAGATTTTGTTGCAAGCAAACTGGTTT  350

seq1  TAATGCTTTTAGAAAGAAAGGAGAATACATTATCTATACTTCATGCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTTTTAGAAAGAAAGGAGAATACATTATCTATACTTCATGCTGTG  400

seq1  AATATATTTTACTGTTGAGACTAGATACTTACACTTCAGATCCACCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTTACTGTTGAGACTAGATACTTACACTTCAGATCCACCACTT  450

seq1  CATGAATGGCAGCTTTATTTTGGGAGGCCATTTTCTTTACTGAGTTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGGCAGCTTTATTTTGGGAGGCCATTTTCTTTACTGAGTTAAGT  500

seq1  CAGTGAGGTCTAATTTGAAGAGATGTAACAAGCCAACCTAGGAAAGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGTCTAATTTGAAGAGATGTAACAAGCCAACCTAGGAAAGAACA  550

seq1  TTCCAAGGTTTCTGAGTGTTTGTCCGTGTCACCGGCAATTCTCCTTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGTTTCTGAGTGTTTGTCCGTGTCACCGGCAATTCTCCTTCCCC  600

seq1  TTCCCCTTCCCCCATCATCATCATCACTACCACCACCTCCTCCTCCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTCCCCCATCATCATCATCACTACCACCACCTCCTCCTCCTCCA  650

seq1  CCACCACCACTACCACCATCACCATATCACTATAAGATAGCTGACATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCACTACCACCATCACCATATCACTATAAGATAGCTGACATACA  700

seq1  CGCTCCCCTATCTCATTATTAGTAAATGGCAGAGTCTTCTGAAGTTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCCCTATCTCATTATTAGTAAATGGCAGAGTCTTCTGAAGTTCAGA  750

seq1  GTGGCTTGAACCATTACATAAACCAAGACGAACCTCCACTCCTGCTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGAACCATTACATAAACCAAGACGAACCTCCACTCCTGCTCCTC  800

seq1  CTCCTTAATTGTTGGAAGTGTTGAAATTACAGACGTGTGTACCCAACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAATTGTTGGAAGTGTTGAAATTACAGACGTGTGTACCCAACTTA  850

seq1  ATTTAAAAAAGAAAAAATTAGATATTTAAATTTTACGTGTATGAGTAAAT  900
      ||||||||||||||||||||||||||  || |||||||||||||||||||
seq2  ATTTAAAAAAGAAAAAATTAGATATT--AAATTTACGTGTATGAGTAAAT  898

seq1  GTTTTGCTCATATGTATCTGTGCTTGCCTATTTCCATGGAGGTAAAAATG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTTTGCTCATATGTATCTGTGCTTGCCTATTTCCATGGA-GTAAAAATG  947

seq1  AAGTGTTGGATATCCTGGAGCTAGTTATAGGTGATGGTGAGCTTCCTGGT  1000
      ||||| |||||||||| |||||||||||||||||| |||||||| |||| 
seq2  AAGTG-TGGATATCCT-GAGCTAGTTATAGGTGAT-GTGAGCTT-CTGGG  993

seq1  GAGTGTTGG-ATAAATCTGGGCTCCTTGCAAAAACAAGTGCTCTATAAGT  1049
      ||||||||| |||||||| |||||  ||| |||||||| ||||||  |||
seq2  GAGTGTTGGAATAAATCT-GGCTC--TGC-AAAACAAG-GCTCTAATAGT  1038

seq1  GCTGAGCCATCTCTC-CAGACCCC  1072
      |||||||||   ||| ||||||||
seq2  GCTGAGCCAATCCTCTCAGACCCC  1062