BAC Information

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BAC

Clone NameB6Ng01-134M19
Chromosome2 (Build37)
Map Location 156,600,117 - 156,733,646
singlet/doubletdoublet
Overlap geneMyl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880
Upstream geneMmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4
Downstream geneNdrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134M19.bB6Ng01-134M19.g
ACCDH935005DH935006
length1,0071,018
definitionDH935005|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M19, 5' end.DH935006|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,600,117 - 156,601,137)(156,733,081 - 156,733,646)
sequence
gaattcttggagccaactttcttctcattccagtctggtccgttttcaag
tcctattggctgaagcactgaagtgtttccagaacccctccccttgtcgc
ccagtttcccactgccccataagcccaaccagcatctcccccacttactg
tctgctctcctgtccttgagcgtgccatacgctctctaaatctcctgcac
tgacatccattacttttcctttgtgacttctgacctctacgctaagctaa
actactccccaaattctagttccggaagtgtttcaactgttacctctaat
gttgccaggacagataaaaactgttaccttctatttatttagacaacctt
gctccatagctcagactgacctggaacctacactatactcgatgttggca
atcctgctgcctcagcttctcaaatgccgagattactggcatgaaccacc
gcatctggctccatctcctctcaatctggctccatttcccagcatcaccc
ttaactccttttcagccgagctcagaactgtcccgggatgtaggcggttt
caggctcccagggctccctaggcagatggatcagttgcctgccccattgc
ggagccaggcagctatttacaaagtaactgaatgccagaaagccctaggg
aaagagtgatggccgctgttgtgaggattgagtctccctgaaaaaaaagg
accatacttggccgggtgaaagccagccttccaccagacacagcaggggc
ctctgggacaagagggggtcggagagctgggaaacgctgaaagctccgcc
cttcttgccagtcttgacacctcaatctgcttccatgccccagcctgggc
cgacccagagaaaggctgcgtcgaggggggctattcaggggcaccccagc
ttctcagcctgcagcagaggcctaataaggccgggctggctgctcagtcc
gccaaccacccgcgcattcttctgccttgtaaggccggcggctgcgaccc
tcagccc
gaattctaggacagccaaggctacacagagaaaccttgtcttgaaaaatc
aaggaaaaaaaaaaaaaaaaagaaatgaaaaaaaactatccagagctagg
cgtgctggcatctgcgtttaatgccagtgctctggaggcagagacaggct
atgaaagaacctattgggaaaacccccactcagctcccgattcggcgtgc
acacaagaatcacgaatagaacacaacaccttgatgtaacaacacgaggt
attttaatggcggagctccgggtcgaaacgtatctcacacaggagacagt
ggattcgaccacgaggcttggaacctaggggtttttatagaaaaggagtg
gggctgggggaggaattggcgcggtttcacatgattggtccatttaaaca
tcagcagcctgtaacatttaacttaggtcagaggggtgggagatagggag
gcgatgggcctgcccgggcatgtcctggtctgttctgctatgttctcagc
cccaggtttcaaagctcacaaacaactccttgggctatttgacatacatt
acatgaatcacagttttatttcctttcagctagcctagtctacttttcca
attccaggcaaatgaaatcttgcacatattttctgcctaccatcagacca
gattctgaacagtctgtctgtctgtctgtctgtccccacatgggtttccc
tttggggaatattgcctcccctggctttggatggagagtactaacaacgc
tgttgccagtggctgttggaatcctcccccagcctgacttatgtaaatgt
ctgtctagtatgtggatgtcctgacccccacgcttaaacagggagcagcc
tggtgacattcatatagcacggtgggttctctgagcattatggatcgggc
agcccgtgagtgagctgggtcattactcatgcttctctcttgctgcagct
gaggtcctgacagcccatgggtgacctcaggatctttcttccccaaactg
ccaccatggccaaggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_156600117_156601137
seq2: B6Ng01-134M19.b_48_1054

seq1  GAATTCTTGGAGCCAACTTTCTTCTCATTCCAGTCTGGTCCGTTTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGCCAACTTTCTTCTCATTCCAGTCTGGTCCGTTTTCAAG  50

seq1  TCCTATTGGCTGAAGCACTGAAGTGTTTCCAGAACCCCTCCCCTTGTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTGGCTGAAGCACTGAAGTGTTTCCAGAACCCCTCCCCTTGTCGC  100

seq1  CCAGTTTCCCACTGCCCCATAAGCCCAACCAGCATCTCCCCCACTTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCCCACTGCCCCATAAGCCCAACCAGCATCTCCCCCACTTACTG  150

seq1  TCTGCTCTCCTGTCCTTGAGCGTGCCATACGCTCTCTAAATCTCCTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTCCTGTCCTTGAGCGTGCCATACGCTCTCTAAATCTCCTGCAC  200

seq1  TGACATCCATTACTTTTCCTTTGTGACTTCTGACCTCTACGCTAAGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCATTACTTTTCCTTTGTGACTTCTGACCTCTACGCTAAGCTAA  250

seq1  ACTACTCCCCAAATTCTAGTTCCGGAAGTGTTTCAACTGTTACCTCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCCCCAAATTCTAGTTCCGGAAGTGTTTCAACTGTTACCTCTAAT  300

seq1  GTTGCCAGGACAGATAAAAACTGTTACCTTCTATTTATTTAGACAACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAGGACAGATAAAAACTGTTACCTTCTATTTATTTAGACAACCTT  350

seq1  GCTCCATAGCTCAGACTGACCTGGAACCTACACTATACTCGATGTTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATAGCTCAGACTGACCTGGAACCTACACTATACTCGATGTTGGCA  400

seq1  ATCCTGCTGCCTCAGCTTCTCAAATGCCGAGATTACTGGCATGAACCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCTGCCTCAGCTTCTCAAATGCCGAGATTACTGGCATGAACCACC  450

seq1  GCATCTGGCTCCATCTCCTCTCAATCTGGCTCCATTTCCCAGCATCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGCTCCATCTCCTCTCAATCTGGCTCCATTTCCCAGCATCACCC  500

seq1  TTAACTCCTTTTCAGCCGAGCTCAGAACTGTCCCGGGATGTAGGCGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCTTTTCAGCCGAGCTCAGAACTGTCCCGGGATGTAGGCGGTTT  550

seq1  CAGGCTCCCAGGGCTCCCTAGGCAGATGGATCAGTTGCCTGCCCCATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCCAGGGCTCCCTAGGCAGATGGATCAGTTGCCTGCCCCATTGC  600

seq1  GGAGCCAGGCAGCTATTTACAAAGTAACTGAATGCCAGAAAGCCCTAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGGCAGCTATTTACAAAGTAACTGAATGCCAGAAAGCCCTAGGG  650

seq1  AAAGAGTGATGGCCGCTGTTGTGAGGATTGAGTCTCCCTGAAAAAAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGATGGCCGCTGTTGTGAGGATTGAGTCTCCCTGAAAAAAAAGG  700

seq1  ACCATACTTGGCCGGGTGAAAGCCAGCCTTCCACCAGACACAGCAGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACTTGGCCGGGTGAAAGCCAGCCTTCCACCAGACACAGCAGGGGC  750

seq1  CTCTGGGACAAGAGGGGGTCGGAGAGCTGGGAAACGCTGAAGGCTCCGCC  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCTGGGACAAGAGGGGGTCGGAGAGCTGGGAAACGCTGAAAGCTCCGCC  800

seq1  CTTCTTGCCAGTCTTGACACCTCAATCTGCTTCCATGCCCCAGCCTGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCCAGTCTTGACACCTCAATCTGCTTCCATGCCCCAGCCTGGGC  850

seq1  CGACCCAGAGAAAGGCTGCGTCGAGGGGGGCTATTCCAGGGGCACCCCAG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CGACCCAGAGAAAGGCTGCGTCGAGGGGGGCTATT-CAGGGGCACCCCAG  899

seq1  CTTCTCAGCCTGCAAGCAGAGGCCTAATAAGGCCGGGCTGGCTGCCTCAG  950
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  CTTCTCAGCCTGC-AGCAGAGGCCTAATAAGGCCGGGCTGGCTG-CTCAG  947

seq1  CCCCGCCCCCACCCCACCCCCGCGCATTCTTCTGCCTTGTAAGGCCGGGC  1000
       ||  |  |||       |||||||||||||||||||||||||||| |||
seq2  TCCGCCAACCA-------CCCGCGCATTCTTCTGCCTTGTAAGGCC-GGC  989

seq1  GGCCTGCGGACCCTCCAGCCC  1021
      || |||| |||||| ||||||
seq2  GG-CTGC-GACCCT-CAGCCC  1007

seq1: chr2_156733081_156733646
seq2: B6Ng01-134M19.g_523_1085 (reverse)

seq1  GAGCCTTGGCCATGGGTGACAGGTTAGGGAAGAAAGATGCCTGAGGTCAC  50
      ||||||||||||| |||| ||| || |||||||||||| |||||||||||
seq2  GAGCCTTGGCCAT-GGTGGCAGTTTGGGGAAGAAAGAT-CCTGAGGTCAC  48

seq1  CCATGGGCTGTCAGGAGCCTCAGGCTGCAGCAAGAGAGGAGCATGAGTAA  100
      |||||||||||||||| ||||| ||||||||||||||| |||||||||||
seq2  CCATGGGCTGTCAGGA-CCTCA-GCTGCAGCAAGAGAGAAGCATGAGTAA  96

seq1  TGACCCAGCTCACTTCACGGGCTGCCCGATCCATAATGCTCAGAG-ACCC  149
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TGACCCAGCTCAC-TCACGGGCTGCCCGATCCATAATGCTCAGAGAACCC  145

seq1  ACCGTGCTCTATGAATGTCACCAGGCTGCTCCCTGTCTAAGCGTGGGGGT  199
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  ACCGTGCTATATGAATGTCACCAGGCTGCTCCCTGTTTAAGCGTGGGGGT  195

seq1  CAGGACATCCACATACTAGACAGACATTTACATAAGTCAGGCTGGGGGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATCCACATACTAGACAGACATTTACATAAGTCAGGCTGGGGGAG  245

seq1  GATTCC-ACAGCCACTGGCAACAGCGTTGTTAGTACTCTCCATCCAAAGC  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAACAGCCACTGGCAACAGCGTTGTTAGTACTCTCCATCCAAAGC  295

seq1  CAGGGGAGGCAATATTCCCCAAAGGGAAACCCATGTGGGGACAGACAGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGGCAATATTCCCCAAAGGGAAACCCATGTGGGGACAGACAGAC  345

seq1  AGACAGACAGACTGTTCAGAATCTGGTCTGATGGTAGGCAGAAAATATGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAGACTGTTCAGAATCTGGTCTGATGGTAGGCAGAAAATATGT  395

seq1  GCAAGATTTCATTTGCCTGGAATTGGAAAAGTAGACTAGGCTAGCTGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATTTCATTTGCCTGGAATTGGAAAAGTAGACTAGGCTAGCTGAAA  445

seq1  GGAAATAAAACTGTGATTCATGTAATGTATGTCAAATAGCCCAAGGAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAAACTGTGATTCATGTAATGTATGTCAAATAGCCCAAGGAGTT  495

seq1  GTTTGTGAGCTTTGAAACCTGGGGCTGAGAACATAGCAGAACAGACCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGAGCTTTGAAACCTGGGGCTGAGAACATAGCAGAACAGACCAGG  545

seq1  ACATGCCCGGGCAGGCCC  566
      ||||||||||||||||||
seq2  ACATGCCCGGGCAGGCCC  563