BAC Information

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BAC

Clone NameB6Ng01-134O13
Chromosome2 (Build37)
Map Location 156,467,935 - 156,615,207
singlet/doubletdoublet
Overlap geneDlgap4, Myl9
Upstream geneTrpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik
Downstream geneLOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134O13.bB6Ng01-134O13.g
ACCDH935089DH935090
length1,076876
definitionDH935089|Mus musculus domesticus DNA, BAC clone: B6Ng01-134O13, 5' end.DH935090|Mus musculus domesticus DNA, BAC clone: B6Ng01-134O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,467,935 - 156,469,013)(156,614,531 - 156,615,207)
sequence
gaattccgggttggatcttttggaacttcaaagctagtggcacgcctcct
ccagcaaggccacgcctccctcatccttcccaaacaattcaccaaatggg
aacctggtattcaaaactatgaacctggaggcgccattctctttcaaact
gacacaggtgttaaggaagatggagcccagggaattaaggatcaggccat
ggagagtagaataggcagctttggaaactcgggagcctgtggtaacgtta
gcacatttactttcctgtgacttcacctggataagatgggtccacaagtt
gctggcccctcccagtgtaagtgctgaagtcagactggtttgatggagtt
cctcctcccagccttcaagccttaccttctcccagaagtgggcggctccc
caaggtgctccccaggacagctgcagccccaccccctccagcctacctac
cctcatccatccaactcacacactccctttctctttcttgctgtgccaag
gatggaacccaggttgtacatgtgtgaggcagaggcgctaccacccagcc
tggctcacccacttagggctcagctggagcgaggacgaggaccgtttctt
cgttgtccatggctctgtgcgggttgtacaggaactccctctgttctata
cctggaaacagtagcacagagggtacaagccagtgggcaaggcaggttga
gatgggtggccaaccctagcctcttggccctgagcaggagcatgcatgta
tcaagtgtctctttttcccaagtccagctgaaacttgctacattgcattg
tccgtctggtgtgaatgttaaggtgagaaaagctgggagagaaaggtgtc
tcgaggaggtcagagctgagtcactgggtctctagtaattctggtctctc
tagcacctcctctctgctccagccgctcctcagtagggtccccaaagctg
gtgaccccaattctccagctaaaggagcttgttagcatcttcaaagctgc
ctgcctgctgccatacataattcccaagctttcaaagaagcagccccaga
caaggttggtttttacctcgaagcaa
gaattcataaattgagggtttgtccttgagtaatggctcaaactctgagt
gtcccagaagctcctgtaatcttatttagccaaggtgtgttgctgtgcgg
atttggtagatcagagacttggccagatcagttgtacctccatccatctt
ttaatctgtgtatttggtgaagaggcaaagtccttattatcttggggaga
ctattctggcatctcaggcagtgtaggtcctggcattgttatcagtaagt
tggtaacagctagggatcctccttggccacttggtctgctttttgttttt
tttattgccctgggcttcataggaattctccttttggtgccctgggcagt
ggatggacttctctgaggtcctgtgctggacaatagtcattagttcttgg
cttcttaacgggcagcaggggaatattccaaggtaactgacctgggacca
ggatcccatgtcccctcactgggttaagtgttttatgatgccctttttgg
cctctggtgtcagtggatgatgtttgacctaattggataaggctgtggcc
ctaagggagaccaaaactggaggctgttaggtggccagttcagatggctt
aatctctacccattcacttggaatagttttagttctgtcaacaggggaaa
ttaccctgtggctgttttagagaacaaaaagcctatattttccctctaag
tctaggctcagtcacagactttgggccttgggagattggcatccccttcc
cggtgaagtgggtctgagctttcattttgctcaacaagtctctccccaaa
aggggtaagggcaatccaggattaccacgaacgaatgagactcttccttg
gtccctaagtctatacagtctgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_156467935_156469013
seq2: B6Ng01-134O13.b_48_1123

seq1  GAATTCCGGGTTGGATCTTTTGGAACTTCAAAGCTAGTGGCACGCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGGTTGGATCTTTTGGAACTTCAAAGCTAGTGGCACGCCTCCT  50

seq1  CCAGCAAGGCCACGCCTCCCTCATCCTTCCCAAACAATTCACCAAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGGCCACGCCTCCCTCATCCTTCCCAAACAATTCACCAAATGGG  100

seq1  AACCTGGTATTCAAAACTATGAACCTGGAGGCGCCATTCTCTTTCAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTATTCAAAACTATGAACCTGGAGGCGCCATTCTCTTTCAAACT  150

seq1  GACACAGGTGTTAAGGAAGATGGAGCCCAGGGAATTAAGGATCAGGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGTGTTAAGGAAGATGGAGCCCAGGGAATTAAGGATCAGGCCAT  200

seq1  GGAGAGTAGAATAGGCAGCTTTGGAAACTCGGGAGCCTGTGGTAACGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTAGAATAGGCAGCTTTGGAAACTCGGGAGCCTGTGGTAACGTTA  250

seq1  GCACATTTACTTTCCTGTGACTTCACCTGGATAAGATGGGTCCACAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTACTTTCCTGTGACTTCACCTGGATAAGATGGGTCCACAAGTT  300

seq1  GCTGGCCCCTCCCAGTGTAAGTGCTGAAGTCAGACTGGTTTGATGGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCCCTCCCAGTGTAAGTGCTGAAGTCAGACTGGTTTGATGGAGTT  350

seq1  CCTCCTCCCAGCCTTCAAGCCTTACCTTCTCCCAGAAGTGGGCGGCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCAGCCTTCAAGCCTTACCTTCTCCCAGAAGTGGGCGGCTCCC  400

seq1  CAAGGTGCTCCCCAGGACAGCTGCAGCCCCACCCCCTCCAGCCTACCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGCTCCCCAGGACAGCTGCAGCCCCACCCCCTCCAGCCTACCTAC  450

seq1  CCTCATCCATCCAACTCACACACTCCCTTTCTCTTTCTTGCTGTGCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCATCCAACTCACACACTCCCTTTCTCTTTCTTGCTGTGCCAAG  500

seq1  GATGGAACCCAGGTTGTACATGTGTGAGGCAGAGGCGCTACCACCCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACCCAGGTTGTACATGTGTGAGGCAGAGGCGCTACCACCCAGCC  550

seq1  TGGCTCACCCACTTAGGGCTCAGCTGGAGCGAGGACGAGGACCGTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACCCACTTAGGGCTCAGCTGGAGCGAGGACGAGGACCGTTTCTT  600

seq1  CGTTGTCCATGGCTCTGTGCGGGTTGTACAGGAACTCCCTCTGTTCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTCCATGGCTCTGTGCGGGTTGTACAGGAACTCCCTCTGTTCTATA  650

seq1  CCTGGAAACAGTAGCACAGAGGGTACAAGCCAGTGGGCAAGGCAGGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAACAGTAGCACAGAGGGTACAAGCCAGTGGGCAAGGCAGGTTGA  700

seq1  GATGGGTGGCCAACCCTAGCCTCTTGGCCCTGAGCAGGAGCATGCATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTGGCCAACCCTAGCCTCTTGGCCCTGAGCAGGAGCATGCATGTA  750

seq1  TCAAGTGTCTCTTTTTCCCAAGTCCAGCTGAAACTTGCTACATTGCATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTCTCTTTTTCCCAAGTCCAGCTGAAACTTGCTACATTGCATTG  800

seq1  TCCGTCTGGTGTGAATGTTAAGGTGAGAAAAGGCTGGGAGAGAAAGGTGT  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCGTCTGGTGTGAATGTTAAGGTGAGAAAA-GCTGGGAGAGAAAGGTGT  849

seq1  CTCGAGGAGGTCAGAGCTGAGTCACTGGGTCTCTAGTAATTCTGGTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGAGGTCAGAGCTGAGTCACTGGGTCTCTAGTAATTCTGGTCTCT  899

seq1  CTAGCACCTCCTCTCTGCTCCAGCCGCTCCTCAGTAGGGTCCCCAAAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCTCCTCTCTGCTCCAGCCGCTCCTCAGTAGGGTCCCCAAAGCT  949

seq1  GGTGACCCCAATTTCTCCAGCTAAGGCAGCTTGTTAGCATC-TCAAAGCT  999
      ||||||||||| |||||||||||| | |||||||||||||| ||||||||
seq2  GGTGACCCCAA-TTCTCCAGCTAAAGGAGCTTGTTAGCATCTTCAAAGCT  998

seq1  GCCTGCCTGCTGCCATACAT-ATTCACCAGGCTTCAAAGAAGCAGCCCCA  1048
      |||||||||||||||||||| |||| | ||  ||||||||||||||||||
seq2  GCCTGCCTGCTGCCATACATAATTCCCAAGCTTTCAAAGAAGCAGCCCCA  1048

seq1  GACAGGGTTGGTTCTTTACCTCCAGAAGCAA  1079
      |||| |||||||| ||||||||  |||||||
seq2  GACAAGGTTGGTT-TTTACCTC--GAAGCAA  1076

seq1: chr2_156614531_156615207
seq2: B6Ng01-134O13.g_71_747 (reverse)

seq1  TTGTTCTCTAAAACAGCCACAGGGTAATTTCCCCTGTTGACAGAACTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCTAAAACAGCCACAGGGTAATTTCCCCTGTTGACAGAACTAAA  50

seq1  ACTATTCCAAGTGAATGGGTAGAGATTAAGCCATCTGAACTGGCCACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCCAAGTGAATGGGTAGAGATTAAGCCATCTGAACTGGCCACCTA  100

seq1  ACAGCCTCCAGTTTTGGTCTCCCTTAGGGCCACAGCCTTATCCAATTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCCAGTTTTGGTCTCCCTTAGGGCCACAGCCTTATCCAATTAGG  150

seq1  TCAAACATCATCCACTGACACCAGAGGCCAAAAAGGGCATCATAAAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATCATCCACTGACACCAGAGGCCAAAAAGGGCATCATAAAACAC  200

seq1  TTAACCCAGTGAGGGGACATGGGATCCTGGTCCCAGGTCAGTTACCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCAGTGAGGGGACATGGGATCCTGGTCCCAGGTCAGTTACCTTGG  250

seq1  AATATTCCCCTGCTGCCCGTTAAGAAGCCAAGAACTAATGACTATTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCCCTGCTGCCCGTTAAGAAGCCAAGAACTAATGACTATTGTCC  300

seq1  AGCACAGGACCTCAGAGAAGTCCATCCACTGCCCAGGGCACCAAAAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGACCTCAGAGAAGTCCATCCACTGCCCAGGGCACCAAAAGGAG  350

seq1  AATTCCTATGAAGCCCAGGGCAATAAAAAAAACAAAAAGCAGACCAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTATGAAGCCCAGGGCAATAAAAAAAACAAAAAGCAGACCAAGTG  400

seq1  GCCAAGGAGGATCCCTAGCTGTTACCAACTTACTGATAACAATGCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGAGGATCCCTAGCTGTTACCAACTTACTGATAACAATGCCAGGA  450

seq1  CCTACACTGCCTGAGATGCCAGAATAGTCTCCCCAAGATAATAAGGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACTGCCTGAGATGCCAGAATAGTCTCCCCAAGATAATAAGGACTT  500

seq1  TGCCTCTTCACCAAATACACAGATTAAAAGATGGATGGAGGTACAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTCACCAAATACACAGATTAAAAGATGGATGGAGGTACAACTGA  550

seq1  TCTGGCCAAGTCTCTGATCTACCAAATCCGCACAGCAACACACCTTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCAAGTCTCTGATCTACCAAATCCGCACAGCAACACACCTTGGCT  600

seq1  AAATAAGATTACAGGAGCTTCTGGGACACTCAGAGTTTGAGCCATTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGATTACAGGAGCTTCTGGGACACTCAGAGTTTGAGCCATTACTC  650

seq1  AAGGACAAACCCTCAATTTATGAATTC  677
      |||||||||||||||||||||||||||
seq2  AAGGACAAACCCTCAATTTATGAATTC  677