BAC Information

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BAC

Clone NameB6Ng01-134O23
Chromosome2 (Build37)
Map Location 104,155,738 - 104,340,496
singlet/doubletdoublet
Overlap geneD430041D05Rik, Hipk3
Upstream geneElf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, LOC100043349
Downstream geneLOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134O23.bB6Ng01-134O23.g
ACCDH935109DH935110
length996465
definitionDH935109|Mus musculus domesticus DNA, BAC clone: B6Ng01-134O23, 5' end.DH935110|Mus musculus domesticus DNA, BAC clone: B6Ng01-134O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,339,941 - 104,340,496)(104,155,738 - 104,156,208)
sequence
gaattcttttggatgaggttttagcagaccactagcttccaccatcacaa
atggtaagaatgtcatgaaaccatctgatacctatagcagtggtggcaca
caccacatttataataactcagaggcaaaagcaagagaatcaccgcaagt
tcaagaccagcctcatccactaggccagccagggctacactgagagaccc
tcttccttccttccttccttccttccttccttccttccttcctttctttc
tttctttctttctttctttctttctttctttctttctttctttctttctt
cctctctcctcttctttctttttttcaaagatttaattcatttgtcttat
gtatagtagtacactgtagctgcactgatggttgtgagccattatgtggt
tgctgggaatttgaattcaggacctctgcttgctcaggtcgaccctgctc
actccagcctgaacatttatttattattatatctaagtacactgtatctt
tcttcagacacaccagaggagggcatcatttcattacagacggttgtgag
ccaccatgtggttgctggggtttgaactcaggacctctggaagagcagtc
agtgctcttaactgctgagccatctctccagcctgagaccttgtttcaaa
atgagagaaagaatcctaaatctgtatagcagagtcttcctgttttgctc
tgatctactttacctgctgtcccataatatatttgtaaattcattaatct
atgactgtcttttttgttttgtgattataaaactttcatgtaatcaagtt
ctgaggtagaacatgtcacctttcaggacaactcaagtctatgtttctag
acctttgtcactcttagctcagaacaaccaaccaaccaaccaatcaacaa
cccaaacaccctttgaaggattctgtgtctgcttcttaagttcatttgac
ttctgagaagttataatgcaggaaaaggtgggggggtactcagtga
acctttgctaagagccaccaaaaatgaagtcagatgtaaccctcaaggta
tggacagtgtctgacctccaaaaaaatcacttctgagtttcaaagaccaa
aaccaaattgccaagtaaacgtctcagacagaagacagcaacaggaggtg
gaggagcccagagcacagaacacccgccctcttgctcctgctgcagtgaa
ctccccctctgcctccacaatgttgctgactccctctgccatggtcacca
tgccactctggctgttacctcatctcctgaagactctgcctatgcacatc
acctgctagaggcagccatgcaggtgcacgcaagtgatccaaatgccaga
ggagcagcgactggcaaaccccagaggcttgctggccagtcagtggcaaa
gcttcagaaggagacattctgctcgatgaggaggaggaggatgaagatga
tggtgatggtggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_104339941_104340496
seq2: B6Ng01-134O23.b_491_1045 (reverse)

seq1  TCACTGAGTTACACCCCCACCTTATCCTGCATTATAAC-TCTCAGAAGTC  49
      |||||||| ||| |||||||||| |||||||||||||| |||||||||||
seq2  TCACTGAG-TACCCCCCCACCTTTTCCTGCATTATAACTTCTCAGAAGTC  49

seq1  AAATGAACTTAAGAAGCAGAGCACAGATCACTTCAAAGGGTGTTTTGGGT  99
      |||||||||||||||||||| ||||||   |||||||||||||||  || 
seq2  AAATGAACTTAAGAAGCAGA-CACAGAATCCTTCAAAGGGTGTTT--GGG  96

seq1  TTGTTGATTGGTTGGTTGGTTGGTTGGTTCTGAGCTAAGAGTGACAAAGG  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGTTGATTGGTTGGTTGGTTGGTT-GTTCTGAGCTAAGAGTGACAAAGG  145

seq1  TCTAGGAACATAGACTTGAGTTGTCCTGAAAGGTGACATGTTCTACCTCA  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAACATAGACTTGAGTTGTCCTGAAAGGTGACATGTTCTACCTCA  195

seq1  GAACTTGATTACATG-AAGTTTTATAATCACAAAAC-AAAAAGACAGTCA  247
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  GAACTTGATTACATGAAAGTTTTATAATCACAAAACAAAAAAGACAGTCA  245

seq1  TAGATTAATGAATTTACAAATATATTATGGGACAGCAGGT-AAGTAGATC  296
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGATTAATGAATTTACAAATATATTATGGGACAGCAGGTAAAGTAGATC  295

seq1  AGAGCAAAACAGGAAGACTCTGCTATACAGATTTAGGATTCTTTCTCTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAACAGGAAGACTCTGCTATACAGATTTAGGATTCTTTCTCTCA  345

seq1  TTTTGAAACAAGGTCTCAGGCTGGAGAGATGGCTCAGCAGTTAAGAGCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAACAAGGTCTCAGGCTGGAGAGATGGCTCAGCAGTTAAGAGCAC  395

seq1  TGACTGCTCTTCCAGAGGTCCTGAGTTCAAACCCCAGCAACCACATGGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTCTTCCAGAGGTCCTGAGTTCAAACCCCAGCAACCACATGGTG  445

seq1  GCTCACAACCGTCTGTAATGAAATGATGCCCTCCTCTGGTGTGTCTGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACCGTCTGTAATGAAATGATGCCCTCCTCTGGTGTGTCTGAAG  495

seq1  AAAGATACAGTGTACTTAGATATAATAATAAATAAATGTTCAGGCTGGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACAGTGTACTTAGATATAATAATAAATAAATGTTCAGGCTGGAG  545

seq1  TGAGCAGGGT  556
      ||||||||||
seq2  TGAGCAGGGT  555

seq1: chr2_104155738_104156208
seq2: B6Ng01-134O23.g_70_540

seq1  GAATTCACCTTTGCTAAGAGCCACCAAAAATGAAGTCAGATGTAACCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTGCTAAGAGCCACCAAAAATGAAGTCAGATGTAACCCTC  50

seq1  AAGGTATGGACAGTGTCTGACCTCCAAAAAAATCACTTCTGAGTTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATGGACAGTGTCTGACCTCCAAAAAAATCACTTCTGAGTTTCAAA  100

seq1  GACCAAAACCAAATTGCCAAGTAAACGTCTCAGACAGAAGACAGCAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAACCAAATTGCCAAGTAAACGTCTCAGACAGAAGACAGCAACAG  150

seq1  GAGGTGGAGGAGCCCAGAGCACAGAACACCCGCCCTCTTGCTCCTGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGAGGAGCCCAGAGCACAGAACACCCGCCCTCTTGCTCCTGCTGC  200

seq1  AGTGAACTCCCCCTCTGCCTCCACAATGTTGCTGACTCCCTCTGCCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTCCCCCTCTGCCTCCACAATGTTGCTGACTCCCTCTGCCATGG  250

seq1  TCACCATGCCACTCTGGCTGTTACCTCATCTCCTGAAGACTCTGCCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGCCACTCTGGCTGTTACCTCATCTCCTGAAGACTCTGCCTATG  300

seq1  CACATCACCTGCTAGAGGCAGCCATGCAGGTGCACGCAAGTGATCCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACCTGCTAGAGGCAGCCATGCAGGTGCACGCAAGTGATCCAAAT  350

seq1  GCCAGAGGAGCAGCGACTGGCAAACCCCAGAGGCTTGCTGGCCAGTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGAGCAGCGACTGGCAAACCCCAGAGGCTTGCTGGCCAGTCAGT  400

seq1  GGCAAAGCTTCAGAAGGAGACATTCTGCTCGATGAGGAGGAGGAGGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCTTCAGAAGGAGACATTCTGCTCGATGAGGAGGAGGAGGATGA  450

seq1  AGATGATGGTGATGGTGGTGG  471
      |||||||||||||||||||||
seq2  AGATGATGGTGATGGTGGTGG  471